A citation-based method for searching scientific literature

Yong Sun Lee, Yoshiyuki Shibata, Ankit Malhotra, Anindya Dutta. Genes Dev 2009
Times Cited: 669







List of co-cited articles
685 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


tRNA-derived microRNA modulates proliferation and the DNA damage response and is down-regulated in B cell lymphoma.
Roy L Maute, Christof Schneider, Pavel Sumazin, Antony Holmes, Andrea Califano, Katia Basso, Riccardo Dalla-Favera. Proc Natl Acad Sci U S A 2013
344
47

Endogenous tRNA-Derived Fragments Suppress Breast Cancer Progression via YBX1 Displacement.
Hani Goodarzi, Xuhang Liu, Hoang C B Nguyen, Steven Zhang, Lisa Fish, Sohail F Tavazoie. Cell 2015
398
47


A transfer-RNA-derived small RNA regulates ribosome biogenesis.
Hak Kyun Kim, Gabriele Fuchs, Shengchun Wang, Wei Wei, Yue Zhang, Hyesuk Park, Biswajoy Roy-Chaudhuri, Pan Li, Jianpeng Xu, Kirk Chu,[...]. Nature 2017
194
40

Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs.
Christian Cole, Andrew Sobala, Cheng Lu, Shawn R Thatcher, Andrew Bowman, John W S Brown, Pamela J Green, Geoffrey J Barton, Gyorgy Hutvagner. RNA 2009
420
38

Angiogenin cleaves tRNA and promotes stress-induced translational repression.
Satoshi Yamasaki, Pavel Ivanov, Guo-Fu Hu, Paul Anderson. J Cell Biol 2009
538
37

Human tRNA-derived small RNAs in the global regulation of RNA silencing.
Dirk Haussecker, Yong Huang, Ashley Lau, Poornima Parameswaran, Andrew Z Fire, Mark A Kay. RNA 2010
454
36

Sperm tsRNAs contribute to intergenerational inheritance of an acquired metabolic disorder.
Qi Chen, Menghong Yan, Zhonghong Cao, Xin Li, Yunfang Zhang, Junchao Shi, Gui-hai Feng, Hongying Peng, Xudong Zhang, Ying Zhang,[...]. Science 2016
631
33

Biogenesis and Function of Transfer RNA-Related Fragments (tRFs).
Pankaj Kumar, Canan Kuscu, Anindya Dutta. Trends Biochem Sci 2016
225
30

Angiogenin-induced tRNA fragments inhibit translation initiation.
Pavel Ivanov, Mohamed M Emara, Judit Villen, Steven P Gygi, Paul Anderson. Mol Cell 2011
560
30

Stress induces tRNA cleavage by angiogenin in mammalian cells.
Hanjiang Fu, Junjun Feng, Qin Liu, Fang Sun, Yi Tie, Jie Zhu, Ruiyun Xing, Zhixian Sun, Xiaofei Zheng. FEBS Lett 2009
333
30

Sex hormone-dependent tRNA halves enhance cell proliferation in breast and prostate cancers.
Shozo Honda, Phillipe Loher, Megumi Shigematsu, Juan P Palazzo, Ryusuke Suzuki, Issei Imoto, Isidore Rigoutsos, Yohei Kirino. Proc Natl Acad Sci U S A 2015
190
30

tsRNA signatures in cancer.
Veronica Balatti, Giovanni Nigita, Dario Veneziano, Alessandra Drusco, Gary S Stein, Terri L Messier, Nicholas H Farina, Jane B Lian, Luisa Tomasello, Chang-Gong Liu,[...]. Proc Natl Acad Sci U S A 2017
120
29

Biogenesis and function of tRNA fragments during sperm maturation and fertilization in mammals.
Upasna Sharma, Colin C Conine, Jeremy M Shea, Ana Boskovic, Alan G Derr, Xin Y Bing, Clemence Belleannee, Alper Kucukural, Ryan W Serra, Fengyun Sun,[...]. Science 2016
613
28

tRNA fragments (tRFs) guide Ago to regulate gene expression post-transcriptionally in a Dicer-independent manner.
Canan Kuscu, Pankaj Kumar, Manjari Kiran, Zhangli Su, Asrar Malik, Anindya Dutta. RNA 2018
153
27

tRNA-Derived Small RNA: A Novel Regulatory Small Non-Coding RNA.
Siqi Li, Zhengping Xu, Jinghao Sheng. Genes (Basel) 2018
134
27

tRF/miR-1280 Suppresses Stem Cell-like Cells and Metastasis in Colorectal Cancer.
Bingqing Huang, Huipeng Yang, Xixi Cheng, Dan Wang, Shuyu Fu, Wencui Shen, Qi Zhang, Lijuan Zhang, Zhenyi Xue, Yan Li,[...]. Cancer Res 2017
108
27

Angiogenin-cleaved tRNA halves interact with cytochrome c, protecting cells from apoptosis during osmotic stress.
Mridusmita Saikia, Raul Jobava, Marc Parisien, Andrea Putnam, Dawid Krokowski, Xing-Huang Gao, Bo-Jhih Guan, Yiyuan Yuan, Eckhard Jankowsky, Zhaoyang Feng,[...]. Mol Cell Biol 2014
162
26

tRF-Leu-CAG promotes cell proliferation and cell cycle in non-small cell lung cancer.
Yang Shao, Qiangling Sun, Xiaomin Liu, Ping Wang, Renqi Wu, Zhongliang Ma. Chem Biol Drug Des 2017
88
27

tRNA-derived fragments and tRNA halves: The new players in cancers.
Linwen Zhu, Jiaxin Ge, Tianwen Li, Yijing Shen, Junming Guo. Cancer Lett 2019
81
29


Extensive terminal and asymmetric processing of small RNAs from rRNAs, snoRNAs, snRNAs, and tRNAs.
Zhihua Li, Christine Ender, Gunter Meister, Patrick S Moore, Yuan Chang, Bino John. Nucleic Acids Res 2012
205
22

Stressing out over tRNA cleavage.
Debrah M Thompson, Roy Parker. Cell 2009
284
22

tRFdb: a database for transfer RNA fragments.
Pankaj Kumar, Suresh B Mudunuri, Jordan Anaya, Anindya Dutta. Nucleic Acids Res 2015
135
22

Transfer RNA-derived fragments and tRNA halves: biogenesis, biological functions and their roles in diseases.
Yijing Shen, Xiuchong Yu, Linwen Zhu, Tianwen Li, Zhilong Yan, Junming Guo. J Mol Med (Berl) 2018
100
22

tRNA cleavage is a conserved response to oxidative stress in eukaryotes.
Debrah M Thompson, Cheng Lu, Pamela J Green, Roy Parker. RNA 2008
379
21

Pseudouridylation of tRNA-Derived Fragments Steers Translational Control in Stem Cells.
Nicola Guzzi, Maciej Cieśla, Phuong Cao Thi Ngoc, Stefan Lang, Sonali Arora, Marios Dimitriou, Kristyna Pimková, Mikael N E Sommarin, Roberto Munita, Michal Lubas,[...]. Cell 2018
173
21

Identification and functional characterization of tRNA-derived RNA fragments (tRFs) in respiratory syncytial virus infection.
Qingrong Wang, Inhan Lee, Junping Ren, Subramanian Shankar Ajay, Yong Sun Lee, Xiaoyong Bao. Mol Ther 2013
187
20

tRNA-derived fragment tRF-03357 promotes cell proliferation, migration and invasion in high-grade serous ovarian cancer.
Minmin Zhang, Feifei Li, Jing Wang, Wenzhu He, Yun Li, Hongyan Li, Zhaolian Wei, Yunxia Cao. Onco Targets Ther 2019
44
45

Roles of tRNA-derived fragments in human cancers.
Chunxiao Sun, Ziyi Fu, Siwei Wang, Jun Li, Yongfei Li, Yanhong Zhang, Fan Yang, Jiahui Chu, Hao Wu, Xiang Huang,[...]. Cancer Lett 2018
72
26

Exosomal tRNA-derived small RNA as a promising biomarker for cancer diagnosis.
Lei Zhu, Jiao Li, Youling Gong, Qingbin Wu, Shuangyan Tan, Dan Sun, Xiaomin Xu, Yuanli Zuo, Yun Zhao, Yu-Quan Wei,[...]. Mol Cancer 2019
97
19

Dysregulation of a family of short noncoding RNAs, tsRNAs, in human cancer.
Yuri Pekarsky, Veronica Balatti, Alexey Palamarchuk, Lara Rizzotto, Dario Veneziano, Giovanni Nigita, Laura Z Rassenti, Harvey I Pass, Thomas J Kipps, Chang-Gong Liu,[...]. Proc Natl Acad Sci U S A 2016
124
19

LTR-Retrotransposon Control by tRNA-Derived Small RNAs.
Andrea J Schorn, Michael J Gutbrod, Chantal LeBlanc, Rob Martienssen. Cell 2017
181
19

MINTbase v2.0: a comprehensive database for tRNA-derived fragments that includes nuclear and mitochondrial fragments from all The Cancer Genome Atlas projects.
Venetia Pliatsika, Phillipe Loher, Rogan Magee, Aristeidis G Telonis, Eric Londin, Megumi Shigematsu, Yohei Kirino, Isidore Rigoutsos. Nucleic Acids Res 2018
92
19

A comprehensive repertoire of tRNA-derived fragments in prostate cancer.
Michael Olvedy, Mauro Scaravilli, Youri Hoogstrate, Tapio Visakorpi, Guido Jenster, Elena S Martens-Uzunova. Oncotarget 2016
98
17

A tRNA-derived fragment competes with mRNA for ribosome binding and regulates translation during stress.
Jennifer Gebetsberger, Leander Wyss, Anna M Mleczko, Julia Reuther, Norbert Polacek. RNA Biol 2017
103
17

tRNA fragments in human health and disease.
Paul Anderson, Pavel Ivanov. FEBS Lett 2014
229
17

A tRNA fragment, 5'-tiRNAVal, suppresses the Wnt/β-catenin signaling pathway by targeting FZD3 in breast cancer.
Dongping Mo, Pan Jiang, Yining Yang, Xuelian Mao, Xuyan Tan, Xun Tang, Da Wei, Bing Li, Xiaoming Wang, Li Tang,[...]. Cancer Lett 2019
58
27

Angiogenin-induced tRNA-derived stress-induced RNAs promote stress-induced stress granule assembly.
Mohamed M Emara, Pavel Ivanov, Tyler Hickman, Nemisha Dawra, Sarah Tisdale, Nancy Kedersha, Guo-Fu Hu, Paul Anderson. J Biol Chem 2010
308
16

tRF2Cancer: A web server to detect tRNA-derived small RNA fragments (tRFs) and their expression in multiple cancers.
Ling-Ling Zheng, Wei-Lin Xu, Shun Liu, Wen-Ju Sun, Jun-Hao Li, Jie Wu, Jian-Hua Yang, Liang-Hu Qu. Nucleic Acids Res 2016
72
20

Aberrant methylation of tRNAs links cellular stress to neuro-developmental disorders.
Sandra Blanco, Sabine Dietmann, Joana V Flores, Shobbir Hussain, Claudia Kutter, Peter Humphreys, Margus Lukk, Patrick Lombard, Lucas Treps, Martyna Popis,[...]. EMBO J 2014
308
15

tRNA-derived small RNAs target transposable element transcripts.
German Martinez, Sarah G Choudury, R Keith Slotkin. Nucleic Acids Res 2017
137
15

G-quadruplex structures contribute to the neuroprotective effects of angiogenin-induced tRNA fragments.
Pavel Ivanov, Elizabeth O'Day, Mohamed M Emara, Gerhard Wagner, Judy Lieberman, Paul Anderson. Proc Natl Acad Sci U S A 2014
190
14

Dynamic expression of tRNA-derived small RNAs define cellular states.
Srikar Krishna, Daniel Gr Yim, Vairavan Lakshmanan, Varsha Tirumalai, Judice Ly Koh, Jung Eun Park, Jit Kong Cheong, Joo Leng Low, Michelle Js Lim, Siu Kwan Sze,[...]. EMBO Rep 2019
52
26

Respiratory Syncytial Virus Utilizes a tRNA Fragment to Suppress Antiviral Responses Through a Novel Targeting Mechanism.
Junfang Deng, Ryan N Ptashkin, Yu Chen, Zhi Cheng, Guangliang Liu, Thien Phan, Xiaoling Deng, Jiehua Zhou, Inhan Lee, Yong Sun Lee,[...]. Mol Ther 2015
83
15

tRNA-derived fragments target the ribosome and function as regulatory non-coding RNA in Haloferax volcanii.
Jennifer Gebetsberger, Marek Zywicki, Andrea Künzi, Norbert Polacek. Archaea 2012
166
13

Role of the tRNA-Derived Small RNAs in Cancer: New Potential Biomarkers and Target for Therapy.
Veronica Balatti, Yuri Pekarsky, Carlo M Croce. Adv Cancer Res 2017
45
28

Drosophila tsRNAs preferentially suppress general translation machinery via antisense pairing and participate in cellular starvation response.
Shiqi Luo, Feng He, Junjie Luo, Shengqian Dou, Yirong Wang, Annan Guo, Jian Lu. Nucleic Acids Res 2018
60
21

Action mechanisms and research methods of tRNA-derived small RNAs.
Yaoyao Xie, Lipeng Yao, Xiuchong Yu, Yao Ruan, Zhe Li, Junming Guo. Signal Transduct Target Ther 2020
52
25

A novel 3'-tRNAGlu-derived fragment acts as a tumor suppressor in breast cancer by targeting nucleolin.
Maurizio Falconi, Mara Giangrossi, Maria Elexpuru Zabaleta, Junbiao Wang, Valentina Gambini, Martina Tilio, Daniela Bencardino, Sergio Occhipinti, Barbara Belletti, Emiliano Laudadio,[...]. FASEB J 2019
27
48


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.