A citation-based method for searching scientific literature

Ingrid Arijs, Gert De Hertogh, Katleen Lemaire, Roel Quintens, Leentje Van Lommel, Kristel Van Steen, Peter Leemans, Isabelle Cleynen, Gert Van Assche, Séverine Vermeire, Karel Geboes, Frans Schuit, Paul Rutgeerts. PLoS One 2009
Times Cited: 133







List of co-cited articles
771 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.
Luke Jostins, Stephan Ripke, Rinse K Weersma, Richard H Duerr, Dermot P McGovern, Ken Y Hui, James C Lee, L Philip Schumm, Yashoda Sharma, Carl A Anderson,[...]. Nature 2012
30

Mucosal gene signatures to predict response to infliximab in patients with ulcerative colitis.
I Arijs, K Li, G Toedter, R Quintens, L Van Lommel, K Van Steen, P Leemans, G De Hertogh, K Lemaire, M Ferrante,[...]. Gut 2009
237
21

Transcriptional analysis of the intestinal mucosa of patients with ulcerative colitis in remission reveals lasting epithelial cell alterations.
Núria Planell, Juan J Lozano, Rut Mora-Buch, M Carme Masamunt, Mireya Jimeno, Ingrid Ordás, Miriam Esteller, Elena Ricart, Josep M Piqué, Julián Panés,[...]. Gut 2013
129
18

Effect of vedolizumab (anti-α4β7-integrin) therapy on histological healing and mucosal gene expression in patients with UC.
Ingrid Arijs, Gert De Hertogh, Bart Lemmens, Leentje Van Lommel, Magali de Bruyn, Wiebe Vanhove, Isabelle Cleynen, Kathleen Machiels, Marc Ferrante, Frans Schuit,[...]. Gut 2018
73
23

Oncostatin M drives intestinal inflammation and predicts response to tumor necrosis factor-neutralizing therapy in patients with inflammatory bowel disease.
Nathaniel R West, Ahmed N Hegazy, Benjamin M J Owens, Samuel J Bullers, Bryan Linggi, Sofia Buonocore, Margherita Coccia, Dieter Görtz, Sébastien This, Krista Stockenhuber,[...]. Nat Med 2017
272
16

Mucosal gene expression of cell adhesion molecules, chemokines, and chemokine receptors in patients with inflammatory bowel disease before and after infliximab treatment.
Ingrid Arijs, Gert De Hertogh, Kathleen Machiels, Kristel Van Steen, Katleen Lemaire, Anica Schraenen, Leentje Van Lommel, Roel Quintens, Gert Van Assche, Séverine Vermeire,[...]. Am J Gastroenterol 2011
106
15

Pediatric Crohn disease patients exhibit specific ileal transcriptome and microbiome signature.
Yael Haberman, Timothy L Tickle, Phillip J Dexheimer, Mi-Ok Kim, Dora Tang, Rebekah Karns, Robert N Baldassano, Joshua D Noe, Joel Rosh, James Markowitz,[...]. J Clin Invest 2014
282
15

Crohn's disease.
Daniel C Baumgart, William J Sandborn. Lancet 2012
13

Gene expression profiling and response signatures associated with differential responses to infliximab treatment in ulcerative colitis.
Gary Toedter, Katherine Li, Colleen Marano, Keying Ma, Sarah Sague, C Chris Huang, Xiao-Yu Song, Paul Rutgeerts, Frédéric Baribaud. Am J Gastroenterol 2011
57
22

Ulcerative colitis.
Ryan Ungaro, Saurabh Mehandru, Patrick B Allen, Laurent Peyrin-Biroulet, Jean-Frédéric Colombel. Lancet 2017
842
12

Infliximab for induction and maintenance therapy for ulcerative colitis.
Paul Rutgeerts, William J Sandborn, Brian G Feagan, Walter Reinisch, Allan Olson, Jewel Johanns, Suzanne Travers, Daniel Rachmilewitz, Stephen B Hanauer, Gary R Lichtenstein,[...]. N Engl J Med 2005
11

Strong Upregulation of AIM2 and IFI16 Inflammasomes in the Mucosa of Patients with Active Inflammatory Bowel Disease.
Wiebe Vanhove, Paul M Peeters, Dominiek Staelens, Anica Schraenen, Jan Van der Goten, Isabelle Cleynen, Sebastiaan De Schepper, Leentje Van Lommel, Niki L Reynaert, Frans Schuit,[...]. Inflamm Bowel Dis 2015
52
21

Inflammatory bowel disease.
Clara Abraham, Judy H Cho. N Engl J Med 2009
10

Genetics and pathogenesis of inflammatory bowel disease.
Bernard Khor, Agnès Gardet, Ramnik J Xavier. Nature 2011
10

Identification of novel predictor classifiers for inflammatory bowel disease by gene expression profiling.
Trinidad Montero-Meléndez, Xavier Llor, Esther García-Planella, Mauro Perretti, Antonio Suárez. PLoS One 2013
40
25

Cell-centred meta-analysis reveals baseline predictors of anti-TNFα non-response in biopsy and blood of patients with IBD.
Renaud Gaujoux, Elina Starosvetsky, Naama Maimon, Francesco Vallania, Haggai Bar-Yoseph, Sigal Pressman, Roni Weisshof, Idan Goren, Keren Rabinowitz, Matti Waterman,[...]. Gut 2019
76
13

Crohn's disease.
Joana Torres, Saurabh Mehandru, Jean-Frédéric Colombel, Laurent Peyrin-Biroulet. Lancet 2017
609
10


Predictive value of epithelial gene expression profiles for response to infliximab in Crohn's disease.
Ingrid Arijs, Roel Quintens, Leentje Van Lommel, Kristel Van Steen, Gert De Hertogh, Katleen Lemaire, Anica Schraenen, Clémentine Perrier, Gert Van Assche, Séverine Vermeire,[...]. Inflamm Bowel Dis 2010
112
9

Cytokines in inflammatory bowel disease.
Markus F Neurath. Nat Rev Immunol 2014
9

Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease.
James Kinchen, Hannah H Chen, Kaushal Parikh, Agne Antanaviciute, Marta Jagielowicz, David Fawkner-Corbett, Neil Ashley, Laura Cubitt, Esther Mellado-Gomez, Moustafa Attar,[...]. Cell 2018
163
9

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.
Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander,[...]. Proc Natl Acad Sci U S A 2005
8

Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Jimmy Z Liu, Suzanne van Sommeren, Hailiang Huang, Siew C Ng, Rudi Alberts, Atsushi Takahashi, Stephan Ripke, James C Lee, Luke Jostins, Tejas Shah,[...]. Nat Genet 2015
8

A functional genomics predictive network model identifies regulators of inflammatory bowel disease.
Lauren A Peters, Jacqueline Perrigoue, Arthur Mortha, Alina Iuga, Won-Min Song, Eric M Neiman, Sean R Llewellyn, Antonio Di Narzo, Brian A Kidd, Shannon E Telesco,[...]. Nat Genet 2017
82
9

Ulcerative colitis.
Ingrid Ordás, Lars Eckmann, Mark Talamini, Daniel C Baumgart, William J Sandborn. Lancet 2012
850
7

Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.
Carl A Anderson, Gabrielle Boucher, Charlie W Lees, Andre Franke, Mauro D'Amato, Kent D Taylor, James C Lee, Philippe Goyette, Marcin Imielinski, Anna Latiano,[...]. Nat Genet 2011
920
7


Virus-plus-susceptibility gene interaction determines Crohn's disease gene Atg16L1 phenotypes in intestine.
Ken Cadwell, Khushbu K Patel, Nicole S Maloney, Ta-Chiang Liu, Aylwin C Y Ng, Chad E Storer, Richard D Head, Ramnik Xavier, Thaddeus S Stappenbeck, Herbert W Virgin. Cell 2010
611
7

Single Lgr5 stem cells build crypt-villus structures in vitro without a mesenchymal niche.
Toshiro Sato, Robert G Vries, Hugo J Snippert, Marc van de Wetering, Nick Barker, Daniel E Stange, Johan H van Es, Arie Abo, Pekka Kujala, Peter J Peters,[...]. Nature 2009
7

Regional variation in gene expression in the healthy colon is dysregulated in ulcerative colitis.
C L Noble, A R Abbas, J Cornelius, C W Lees, G-T Ho, K Toy, Z Modrusan, N Pal, F Zhong, S Chalasani,[...]. Gut 2008
123
7

Diagnosis of ulcerative colitis before onset of inflammation by multivariate modeling of genome-wide gene expression data.
Jørgen Olsen, Thomas A Gerds, Jakob B Seidelin, Claudio Csillag, Jacob T Bjerrum, Jesper T Troelsen, Ole Haagen Nielsen. Inflamm Bowel Dis 2009
77
9

Genome-wide gene expression differences in Crohn's disease and ulcerative colitis from endoscopic pinch biopsies: insights into distinctive pathogenesis.
Feng Wu, Themistocles Dassopoulos, Leslie Cope, Anirban Maitra, Steven R Brant, Mary L Harris, Theodore M Bayless, Giovanni Parmigiani, Shukti Chakravarti. Inflamm Bowel Dis 2007
186
7

Activation of an IL-6:STAT3-dependent transcriptome in pediatric-onset inflammatory bowel disease.
Rebecca Carey, Ingrid Jurickova, Edgar Ballard, Erin Bonkowski, Xiaonan Han, Huan Xu, Lee A Denson. Inflamm Bowel Dis 2008
100
7

Loci on 20q13 and 21q22 are associated with pediatric-onset inflammatory bowel disease.
Subra Kugathasan, Robert N Baldassano, Jonathan P Bradfield, Patrick M A Sleiman, Marcin Imielinski, Stephen L Guthery, Salvatore Cucchiara, Cecilia E Kim, Edward C Frackelton, Kiran Annaiah,[...]. Nat Genet 2008
240
7

Third European Evidence-based Consensus on Diagnosis and Management of Ulcerative Colitis. Part 1: Definitions, Diagnosis, Extra-intestinal Manifestations, Pregnancy, Cancer Surveillance, Surgery, and Ileo-anal Pouch Disorders.
Fernando Magro, Paolo Gionchetti, Rami Eliakim, Sandro Ardizzone, Alessandro Armuzzi, Manuel Barreiro-de Acosta, Johan Burisch, Krisztina B Gecse, Ailsa L Hart, Pieter Hindryckx,[...]. J Crohns Colitis 2017
670
7

Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.
Katrina M de Lange, Loukas Moutsianas, James C Lee, Christopher A Lamb, Yang Luo, Nicholas A Kennedy, Luke Jostins, Daniel L Rice, Javier Gutierrez-Achury, Sun-Gou Ji,[...]. Nat Genet 2017
368
7

Genetic and Transcriptomic Bases of Intestinal Epithelial Barrier Dysfunction in Inflammatory Bowel Disease.
Maaike Vancamelbeke, Tim Vanuytsel, Ricard Farré, Sare Verstockt, Marc Ferrante, Gert Van Assche, Paul Rutgeerts, Frans Schuit, Séverine Vermeire, Ingrid Arijs,[...]. Inflamm Bowel Dis 2017
49
14

Prediction of complicated disease course for children newly diagnosed with Crohn's disease: a multicentre inception cohort study.
Subra Kugathasan, Lee A Denson, Thomas D Walters, Mi-Ok Kim, Urko M Marigorta, Melanie Schirmer, Kajari Mondal, Chunyan Liu, Anne Griffiths, Joshua D Noe,[...]. Lancet 2017
267
7

Ulcerative colitis mucosal transcriptomes reveal mitochondriopathy and personalized mechanisms underlying disease severity and treatment response.
Yael Haberman, Rebekah Karns, Phillip J Dexheimer, Melanie Schirmer, Judith Somekh, Ingrid Jurickova, Tzipi Braun, Elizabeth Novak, Laura Bauman, Margaret H Collins,[...]. Nat Commun 2019
79
8

Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis.
Christopher S Smillie, Moshe Biton, Jose Ordovas-Montanes, Keri M Sullivan, Grace Burgin, Daniel B Graham, Rebecca H Herbst, Noga Rogel, Michal Slyper, Julia Waldman,[...]. Cell 2019
228
7

Infliximab, azathioprine, or combination therapy for Crohn's disease.
Jean Frédéric Colombel, William J Sandborn, Walter Reinisch, Gerassimos J Mantzaris, Asher Kornbluth, Daniel Rachmilewitz, Simon Lichtiger, Geert D'Haens, Robert H Diamond, Delma L Broussard,[...]. N Engl J Med 2010
6


Changes in expression and distribution of claudin 2, 5 and 8 lead to discontinuous tight junctions and barrier dysfunction in active Crohn's disease.
S Zeissig, N Bürgel, D Günzel, J Richter, J Mankertz, U Wahnschaffe, A J Kroesen, M Zeitz, M Fromm, J-D Schulzke. Gut 2007
716
6

Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.
Andre Franke, Dermot P B McGovern, Jeffrey C Barrett, Kai Wang, Graham L Radford-Smith, Tariq Ahmad, Charlie W Lees, Tobias Balschun, James Lee, Rebecca Roberts,[...]. Nat Genet 2010
6

A key role for autophagy and the autophagy gene Atg16l1 in mouse and human intestinal Paneth cells.
Ken Cadwell, John Y Liu, Sarah L Brown, Hiroyuki Miyoshi, Joy Loh, Jochen K Lennerz, Chieko Kishi, Wumesh Kc, Javier A Carrero, Steven Hunt,[...]. Nature 2008
6

Reduced Paneth cell alpha-defensins in ileal Crohn's disease.
Jan Wehkamp, Nita H Salzman, Edith Porter, Sabine Nuding, Michael Weichenthal, Robert E Petras, Bo Shen, Elke Schaeffeler, Matthias Schwab, Rose Linzmeier,[...]. Proc Natl Acad Sci U S A 2005
685
6

Whole genome gene expression meta-analysis of inflammatory bowel disease colon mucosa demonstrates lack of major differences between Crohn's disease and ulcerative colitis.
Atle van Beelen Granlund, Arnar Flatberg, Ann E Østvik, Ignat Drozdov, Bjørn I Gustafsson, Mark Kidd, Vidar Beisvag, Sverre H Torp, Helge L Waldum, Tom Christian Martinsen,[...]. PLoS One 2013
83
7

Exploration, normalization, and summaries of high density oligonucleotide array probe level data.
Rafael A Irizarry, Bridget Hobbs, Francois Collin, Yasmin D Beazer-Barclay, Kristen J Antonellis, Uwe Scherf, Terence P Speed. Biostatistics 2003
6


Effect of faecal stream diversion on recurrence of Crohn's disease in the neoterminal ileum.
P Rutgeerts, K Goboes, M Peeters, M Hiele, F Penninckx, R Aerts, R Kerremans, G Vantrappen. Lancet 1991
538
6


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.