A citation-based method for searching scientific literature

Marlene Oeffinger, Daniel Zenklusen, Angelica Ferguson, Karen E Wei, Aziz El Hage, David Tollervey, Brian T Chait, Robert H Singer, Michael P Rout. Mol Cell 2009
Times Cited: 54







List of co-cited articles
775 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The 5' end of yeast 5.8S rRNA is generated by exonucleases from an upstream cleavage site.
Y Henry, H Wood, J P Morrissey, E Petfalski, S Kearsey, D Tollervey. EMBO J 1994
259
51




Assembly of Saccharomyces cerevisiae 60S ribosomal subunits: role of factors required for 27S pre-rRNA processing.
Aarti Sahasranaman, Jill Dembowski, John Strahler, Philip Andrews, Janine Maddock, John L Woolford. EMBO J 2011
69
29


Efficient termination of transcription by RNA polymerase I requires the 5' exonuclease Rat1 in yeast.
Aziz El Hage, Michal Koper, Joanna Kufel, David Tollervey. Genes Dev 2008
72
27

Driving ribosome assembly.
Dieter Kressler, Ed Hurt, Jochen Bassler. Biochim Biophys Acta 2010
332
27

Ribosome biogenesis in the yeast Saccharomyces cerevisiae.
John L Woolford, Susan J Baserga. Genetics 2013
421
27

The post-transcriptional steps of eukaryotic ribosome biogenesis.
A K Henras, J Soudet, M Gérus, S Lebaron, M Caizergues-Ferrer, A Mougin, Y Henry. Cell Mol Life Sci 2008
406
25


A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis.
François Dragon, Jennifer E G Gallagher, Patricia A Compagnone-Post, Brianna M Mitchell, Kara A Porwancher, Karen A Wehner, Steven Wormsley, Robert E Settlage, Jeffrey Shabanowitz, Yvonne Osheim,[...]. Nature 2002
511
24


Pre-18S ribosomal RNA is structurally compacted into the SSU processome prior to being cleaved from nascent transcripts in Saccharomyces cerevisiae.
Yvonne N Osheim, Sarah L French, Kristin M Keck, Erica A Champion, Krasimir Spasov, François Dragon, Susan J Baserga, Ann L Beyer. Mol Cell 2004
191
24

Saccharomyces cerevisiae RAI1 (YGL246c) is homologous to human DOM3Z and encodes a protein that binds the nuclear exoribonuclease Rat1p.
Y Xue, X Bai, I Lee, G Kallstrom, J Ho, J Brown, A Stevens, A W Johnson. Mol Cell Biol 2000
90
22

The structure of the eukaryotic ribosome at 3.0 Å resolution.
Adam Ben-Shem, Nicolas Garreau de Loubresse, Sergey Melnikov, Lasse Jenner, Gulnara Yusupova, Marat Yusupov. Science 2011
709
22


Structure and function of the 5'-->3' exoribonuclease Rat1 and its activating partner Rai1.
Song Xiang, Amalene Cooper-Morgan, Xinfu Jiao, Megerditch Kiledjian, James L Manley, Liang Tong. Nature 2009
133
20

RNA helicase Prp43 and its co-factor Pfa1 promote 20 to 18 S rRNA processing catalyzed by the endonuclease Nob1.
Brigitte Pertschy, Claudia Schneider, Marén Gnädig, Thorsten Schäfer, David Tollervey, Ed Hurt. J Biol Chem 2009
137
20

Assembly factors Rpf2 and Rrs1 recruit 5S rRNA and ribosomal proteins rpL5 and rpL11 into nascent ribosomes.
Jingyu Zhang, Piyanun Harnpicharnchai, Jelena Jakovljevic, Lan Tang, Yurong Guo, Marlene Oeffinger, Michael P Rout, Shawna L Hiley, Timothy Hughes, John L Woolford. Genes Dev 2007
138
20

The AAA-ATPase Rea1 drives removal of biogenesis factors during multiple stages of 60S ribosome assembly.
Jochen Bassler, Martina Kallas, Brigitte Pertschy, Cornelia Ulbrich, Matthias Thoms, Ed Hurt. Mol Cell 2010
79
20

RNA degradation by the exosome is promoted by a nuclear polyadenylation complex.
John LaCava, Jonathan Houseley, Cosmin Saveanu, Elisabeth Petfalski, Elizabeth Thompson, Alain Jacquier, David Tollervey. Cell 2005
667
18

Ribosome synthesis in Saccharomyces cerevisiae.
J Venema, D Tollervey. Annu Rev Genet 1999
617
18

90S pre-ribosomes include the 35S pre-rRNA, the U3 snoRNP, and 40S subunit processing factors but predominantly lack 60S synthesis factors.
Paola Grandi, Vladimir Rybin, Jochen Bassler, Elisabeth Petfalski, Daniela Strauss, Martina Marzioch, Thorsten Schäfer, Bernhard Kuster, Herbert Tschochner, David Tollervey,[...]. Mol Cell 2002
365
18


Comprehensive analysis of diverse ribonucleoprotein complexes.
Marlene Oeffinger, Karen E Wei, Richard Rogers, Jeffrey A DeGrasse, Brian T Chait, John D Aitchison, Michael P Rout. Nat Methods 2007
192
18

Rcl1 protein, a novel nuclease for 18 S ribosomal RNA production.
Darryl M Horn, Saundra L Mason, Katrin Karbstein. J Biol Chem 2011
46
21

Proofreading of pre-40S ribosome maturation by a translation initiation factor and 60S subunits.
Simon Lebaron, Claudia Schneider, Robert W van Nues, Agata Swiatkowska, Dietrich Walsh, Bettina Böttcher, Sander Granneman, Nicholas J Watkins, David Tollervey. Nat Struct Mol Biol 2012
122
18


The evolutionarily conserved protein Las1 is required for pre-rRNA processing at both ends of ITS2.
Stéphanie Schillewaert, Ludivine Wacheul, Frédéric Lhomme, Denis L J Lafontaine. Mol Cell Biol 2012
48
20


Arabidopsis thaliana XRN2 is required for primary cleavage in the pre-ribosomal RNA.
Monika Zakrzewska-Placzek, Frederic F Souret, Grzegorz J Sobczyk, Pamela J Green, Joanna Kufel. Nucleic Acids Res 2010
70
16

60S pre-ribosome formation viewed from assembly in the nucleolus until export to the cytoplasm.
Tracy A Nissan, Jochen Bassler, Elisabeth Petfalski, David Tollervey, Ed Hurt. EMBO J 2002
278
16

Dynamic conformational model for the role of ITS2 in pre-rRNA processing in yeast.
Colette A Côté, Chris L Greer, Brenda A Peculis. RNA 2002
77
16

Ytm1, Nop7, and Erb1 form a complex necessary for maturation of yeast 66S preribosomes.
Tiffany D Miles, Jelena Jakovljevic, Edward W Horsey, Piyanun Harnpicharnchai, Lan Tang, John L Woolford. Mol Cell Biol 2005
74
16

Maturation of eukaryotic ribosomes: acquisition of functionality.
Vikram Govind Panse, Arlen W Johnson. Trends Biochem Sci 2010
141
16

Mechanochemical removal of ribosome biogenesis factors from nascent 60S ribosomal subunits.
Cornelia Ulbrich, Meikel Diepholz, Jochen Bassler, Dieter Kressler, Brigitte Pertschy, Kyriaki Galani, Bettina Böttcher, Ed Hurt. Cell 2009
103
16

The RNA of RNase MRP is required for normal processing of ribosomal RNA.
S Chu, R H Archer, J M Zengel, L Lindahl. Proc Natl Acad Sci U S A 1994
184
16

Mapping the cleavage sites on mammalian pre-rRNAs: where do we stand?
Sahra-Taylor Mullineux, Denis L J Lafontaine. Biochimie 2012
127
16

The small subunit processome in ribosome biogenesis—progress and prospects.
Kathleen R Phipps, J Michael Charette, Susan J Baserga. Wiley Interdiscip Rev RNA 2011
122
16

The economics of ribosome biosynthesis in yeast.
J R Warner. Trends Biochem Sci 1999
16

Structure of the pre-60S ribosomal subunit with nuclear export factor Arx1 bound at the exit tunnel.
Bettina Bradatsch, Christoph Leidig, Sander Granneman, Marén Gnädig, David Tollervey, Bettina Böttcher, Roland Beckmann, Ed Hurt. Nat Struct Mol Biol 2012
85
16

A translation-like cycle is a quality control checkpoint for maturing 40S ribosome subunits.
Bethany S Strunk, Megan N Novak, Crystal L Young, Katrin Karbstein. Cell 2012
170
16

The complexity of human ribosome biogenesis revealed by systematic nucleolar screening of Pre-rRNA processing factors.
Lionel Tafforeau, Christiane Zorbas, Jean-Louis Langhendries, Sahra-Taylor Mullineux, Vassiliki Stamatopoulou, Romain Mullier, Ludivine Wacheul, Denis L J Lafontaine. Mol Cell 2013
245
16

An overview of pre-ribosomal RNA processing in eukaryotes.
Anthony K Henras, Célia Plisson-Chastang, Marie-Françoise O'Donohue, Anirban Chakraborty, Pierre-Emmanuel Gleizes. Wiley Interdiscip Rev RNA 2015
284
16

Processing of the precursors to small nucleolar RNAs and rRNAs requires common components.
E Petfalski, T Dandekar, Y Henry, D Tollervey. Mol Cell Biol 1998
166
14

The yeast Rat1 exonuclease promotes transcription termination by RNA polymerase II.
Minkyu Kim, Nevan J Krogan, Lidia Vasiljeva, Oliver J Rando, Eduard Nedea, Jack F Greenblatt, Stephen Buratowski. Nature 2004
356
14


Interactions among Ytm1, Erb1, and Nop7 required for assembly of the Nop7-subcomplex in yeast preribosomes.
Lan Tang, Aarti Sahasranaman, Jelena Jakovljevic, Erica Schleifman, John L Woolford. Mol Biol Cell 2008
42
19



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.