A citation-based method for searching scientific literature

Linda Madisen, Theresa A Zwingman, Susan M Sunkin, Seung Wook Oh, Hatim A Zariwala, Hong Gu, Lydia L Ng, Richard D Palmiter, Michael J Hawrylycz, Allan R Jones, Ed S Lein, Hongkui Zeng. Nat Neurosci 2010
Times Cited: 3136







List of co-cited articles
284 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


A resource of Cre driver lines for genetic targeting of GABAergic neurons in cerebral cortex.
Hiroki Taniguchi, Miao He, Priscilla Wu, Sangyong Kim, Raehum Paik, Ken Sugino, Duda Kvitsiani, Yu Fu, Jiangteng Lu, Ying Lin,[...]. Neuron 2011
939
12

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
11

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
10

Transgenic mice for intersectional targeting of neural sensors and effectors with high specificity and performance.
Linda Madisen, Aleena R Garner, Daisuke Shimaoka, Amy S Chuong, Nathan C Klapoetke, Lu Li, Alexander van der Bourg, Yusuke Niino, Ladan Egolf, Claudio Monetti,[...]. Neuron 2015
451
9

Integrating single-cell transcriptomic data across different conditions, technologies, and species.
Andrew Butler, Paul Hoffman, Peter Smibert, Efthymia Papalexi, Rahul Satija. Nat Biotechnol 2018
8

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
8

Comprehensive Integration of Single-Cell Data.
Tim Stuart, Andrew Butler, Paul Hoffman, Christoph Hafemeister, Efthymia Papalexi, William M Mauck, Yuhan Hao, Marlon Stoeckius, Peter Smibert, Rahul Satija. Cell 2019
6

Cre reporter strains produced by targeted insertion of EYFP and ECFP into the ROSA26 locus.
S Srinivas, T Watanabe, C S Lin, C M William, Y Tanabe, T M Jessell, F Costantini. BMC Dev Biol 2001
6

Molecular Architecture of the Mouse Nervous System.
Amit Zeisel, Hannah Hochgerner, Peter Lönnerberg, Anna Johnsson, Fatima Memic, Job van der Zwan, Martin Häring, Emelie Braun, Lars E Borm, Gioele La Manno,[...]. Cell 2018
618
5

Adult mouse cortical cell taxonomy revealed by single cell transcriptomics.
Bosiljka Tasic, Vilas Menon, Thuc Nghi Nguyen, Tae Kyung Kim, Tim Jarsky, Zizhen Yao, Boaz Levi, Lucas T Gray, Staci A Sorensen, Tim Dolbeare,[...]. Nat Neurosci 2016
672
5

CRISPR-Cas9 knockin mice for genome editing and cancer modeling.
Randall J Platt, Sidi Chen, Yang Zhou, Michael J Yim, Lukasz Swiech, Hannah R Kempton, James E Dahlman, Oren Parnas, Thomas M Eisenhaure, Marko Jovanovic,[...]. Cell 2014
837
5

A developmental switch in the response of DRG neurons to ETS transcription factor signaling.
Simon Hippenmeyer, Eline Vrieseling, Markus Sigrist, Thomas Portmann, Celia Laengle, David R Ladle, Silvia Arber. PLoS Biol 2005
640
5

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.
Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander,[...]. Proc Natl Acad Sci U S A 2005
5

Rapid, reversible activation of AgRP neurons drives feeding behavior in mice.
Michael J Krashes, Shuichi Koda, ChianPing Ye, Sarah C Rogan, Andrew C Adams, Daniel S Cusher, Eleftheria Maratos-Flier, Bryan L Roth, Bradford B Lowell. J Clin Invest 2011
710
5

Targeting Cre recombinase to specific neuron populations with bacterial artificial chromosome constructs.
Shiaoching Gong, Martin Doughty, Carroll R Harbaugh, Alexander Cummins, Mary E Hatten, Nathaniel Heintz, Charles R Gerfen. J Neurosci 2007
506
5

A global double-fluorescent Cre reporter mouse.
Mandar Deepak Muzumdar, Bosiljka Tasic, Kazunari Miyamichi, Ling Li, Liqun Luo. Genesis 2007
5

Transcriptional Architecture of Synaptic Communication Delineates GABAergic Neuron Identity.
Anirban Paul, Megan Crow, Ricardo Raudales, Miao He, Jesse Gillis, Z Josh Huang. Cell 2017
158
4


Viral-genetic tracing of the input-output organization of a central noradrenaline circuit.
Lindsay A Schwarz, Kazunari Miyamichi, Xiaojing J Gao, Kevin T Beier, Brandon Weissbourd, Katherine E DeLoach, Jing Ren, Sandy Ibanes, Robert C Malenka, Eric J Kremer,[...]. Nature 2015
297
4

Genome-wide atlas of gene expression in the adult mouse brain.
Ed S Lein, Michael J Hawrylycz, Nancy Ao, Mikael Ayres, Amy Bensinger, Amy Bernard, Andrew F Boe, Mark S Boguski, Kevin S Brockway, Emi J Byrnes,[...]. Nature 2007
4

Leptin action on GABAergic neurons prevents obesity and reduces inhibitory tone to POMC neurons.
Linh Vong, Chianping Ye, Zongfang Yang, Brian Choi, Streamson Chua, Bradford B Lowell. Neuron 2011
593
4

HTSeq--a Python framework to work with high-throughput sequencing data.
Simon Anders, Paul Theodor Pyl, Wolfgang Huber. Bioinformatics 2015
4

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.
Mark D Robinson, Davis J McCarthy, Gordon K Smyth. Bioinformatics 2010
4

NIH Image to ImageJ: 25 years of image analysis.
Caroline A Schneider, Wayne S Rasband, Kevin W Eliceiri. Nat Methods 2012
4


Identification of stem cells in small intestine and colon by marker gene Lgr5.
Nick Barker, Johan H van Es, Jeroen Kuipers, Pekka Kujala, Maaike van den Born, Miranda Cozijnsen, Andrea Haegebarth, Jeroen Korving, Harry Begthel, Peter J Peters,[...]. Nature 2007
4

Inhibition of inhibition in visual cortex: the logic of connections between molecularly distinct interneurons.
Carsten K Pfeffer, Mingshan Xue, Miao He, Z Josh Huang, Massimo Scanziani. Nat Neurosci 2013
615
3

A toolbox of Cre-dependent optogenetic transgenic mice for light-induced activation and silencing.
Linda Madisen, Tianyi Mao, Henner Koch, Jia-min Zhuo, Antal Berenyi, Shigeyoshi Fujisawa, Yun-Wei A Hsu, Alfredo J Garcia, Xuan Gu, Sebastien Zanella,[...]. Nat Neurosci 2012
672
3

Hierarchical organization of cortical and thalamic connectivity.
Julie A Harris, Stefan Mihalas, Karla E Hirokawa, Jennifer D Whitesell, Hannah Choi, Amy Bernard, Phillip Bohn, Shiella Caldejon, Linzy Casal, Andrew Cho,[...]. Nature 2019
71
4

A Cellular Resolution Map of Barrel Cortex Activity during Tactile Behavior.
Simon P Peron, Jeremy Freeman, Vijay Iyer, Caiying Guo, Karel Svoboda. Neuron 2015
136
3



Strategies and Tools for Combinatorial Targeting of GABAergic Neurons in Mouse Cerebral Cortex.
Miao He, Jason Tucciarone, SooHyun Lee, Maximiliano José Nigro, Yongsoo Kim, Jesse Maurica Levine, Sean Michael Kelly, Illya Krugikov, Priscilla Wu, Yang Chen,[...]. Neuron 2016
104
3

Shared and distinct transcriptomic cell types across neocortical areas.
Bosiljka Tasic, Zizhen Yao, Lucas T Graybuck, Kimberly A Smith, Thuc Nghi Nguyen, Darren Bertagnolli, Jeff Goldy, Emma Garren, Michael N Economo, Sarada Viswanathan,[...]. Nature 2018
342
3

A next-generation dual-recombinase system for time- and host-specific targeting of pancreatic cancer.
Nina Schönhuber, Barbara Seidler, Kathleen Schuck, Christian Veltkamp, Christina Schachtler, Magdalena Zukowska, Stefan Eser, Thorsten B Feyerabend, Mariel C Paul, Philipp Eser,[...]. Nat Med 2014
119
3

Analysis of lung tumor initiation and progression using conditional expression of oncogenic K-ras.
E L Jackson, N Willis, K Mercer, R T Bronson, D Crowley, R Montoya, T Jacks, D A Tuveson. Genes Dev 2001
3

Quantitative assessment of tactile allodynia in the rat paw.
S R Chaplan, F W Bach, J W Pogrel, J M Chung, T L Yaksh. J Neurosci Methods 1994
3

A gene expression atlas of the central nervous system based on bacterial artificial chromosomes.
Shiaoching Gong, Chen Zheng, Martin L Doughty, Kasia Losos, Nicholas Didkovsky, Uta B Schambra, Norma J Nowak, Alexandra Joyner, Gabrielle Leblanc, Mary E Hatten,[...]. Nature 2003
3

Regulation of Cre recombinase activity by mutated estrogen receptor ligand-binding domains.
R Feil, J Wagner, D Metzger, P Chambon. Biochem Biophys Res Commun 1997
668
3

Modification of gene activity in mouse embryos in utero by a tamoxifen-inducible form of Cre recombinase.
P S Danielian, D Muccino, D H Rowitch, S K Michael, A P McMahon. Curr Biol 1998
980
3

RNA velocity of single cells.
Gioele La Manno, Ruslan Soldatov, Amit Zeisel, Emelie Braun, Hannah Hochgerner, Viktor Petukhov, Katja Lidschreiber, Maria E Kastriti, Peter Lönnerberg, Alessandro Furlan,[...]. Nature 2018
562
3

Development and Functional Diversification of Cortical Interneurons.
Lynette Lim, Da Mi, Alfredo Llorca, Oscar Marín. Neuron 2018
146
3

Green fluorescent protein expression and colocalization with calretinin, parvalbumin, and somatostatin in the GAD67-GFP knock-in mouse.
Nobuaki Tamamaki, Yuchio Yanagawa, Ryohei Tomioka, Jun-Ichi Miyazaki, Kunihiko Obata, Takeshi Kaneko. J Comp Neurol 2003
914
3

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells.
Cole Trapnell, Davide Cacchiarelli, Jonna Grimsby, Prapti Pokharel, Shuqiang Li, Michael Morse, Niall J Lennon, Kenneth J Livak, Tarjei S Mikkelsen, John L Rinn. Nat Biotechnol 2014
3

Mapping of Brain Activity by Automated Volume Analysis of Immediate Early Genes.
Nicolas Renier, Eliza L Adams, Christoph Kirst, Zhuhao Wu, Ricardo Azevedo, Johannes Kohl, Anita E Autry, Lolahon Kadiri, Kannan Umadevi Venkataraju, Yu Zhou,[...]. Cell 2016
260
3

Transgenic strategies for combinatorial expression of fluorescent proteins in the nervous system.
Jean Livet, Tamily A Weissman, Hyuno Kang, Ryan W Draft, Ju Lu, Robyn A Bennis, Joshua R Sanes, Jeff W Lichtman. Nature 2007
3

Hippocampal GABAergic Inhibitory Interneurons.
Kenneth A Pelkey, Ramesh Chittajallu, Michael T Craig, Ludovic Tricoire, Jason C Wester, Chris J McBain. Physiol Rev 2017
223
3

Theta oscillations in the hippocampus.
György Buzsáki. Neuron 2002
3

Corelease of acetylcholine and GABA from cholinergic forebrain neurons.
Arpiar Saunders, Adam J Granger, Bernardo L Sabatini. Elife 2015
97
3

Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities.
Sven Heinz, Christopher Benner, Nathanael Spann, Eric Bertolino, Yin C Lin, Peter Laslo, Jason X Cheng, Cornelis Murre, Harinder Singh, Christopher K Glass. Mol Cell 2010
3


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.