A citation-based method for searching scientific literature

Linda Madisen, Theresa A Zwingman, Susan M Sunkin, Seung Wook Oh, Hatim A Zariwala, Hong Gu, Lydia L Ng, Richard D Palmiter, Michael J Hawrylycz, Allan R Jones, Ed S Lein, Hongkui Zeng. Nat Neurosci 2010
Times Cited: 3208







List of co-cited articles
327 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


A resource of Cre driver lines for genetic targeting of GABAergic neurons in cerebral cortex.
Hiroki Taniguchi, Miao He, Priscilla Wu, Sangyong Kim, Raehum Paik, Ken Sugino, Duda Kvitsiani, Yu Fu, Jiangteng Lu, Ying Lin,[...]. Neuron 2011
963
14

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
11

Transgenic mice for intersectional targeting of neural sensors and effectors with high specificity and performance.
Linda Madisen, Aleena R Garner, Daisuke Shimaoka, Amy S Chuong, Nathan C Klapoetke, Lu Li, Alexander van der Bourg, Yusuke Niino, Ladan Egolf, Claudio Monetti,[...]. Neuron 2015
466
9

Integrating single-cell transcriptomic data across different conditions, technologies, and species.
Andrew Butler, Paul Hoffman, Peter Smibert, Efthymia Papalexi, Rahul Satija. Nat Biotechnol 2018
9

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
9

Comprehensive Integration of Single-Cell Data.
Tim Stuart, Andrew Butler, Paul Hoffman, Christoph Hafemeister, Efthymia Papalexi, William M Mauck, Yuhan Hao, Marlon Stoeckius, Peter Smibert, Rahul Satija. Cell 2019
7

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
7

Transcriptional Architecture of Synaptic Communication Delineates GABAergic Neuron Identity.
Anirban Paul, Megan Crow, Ricardo Raudales, Miao He, Jesse Gillis, Z Josh Huang. Cell 2017
168
6

Adult mouse cortical cell taxonomy revealed by single cell transcriptomics.
Bosiljka Tasic, Vilas Menon, Thuc Nghi Nguyen, Tae Kyung Kim, Tim Jarsky, Zizhen Yao, Boaz Levi, Lucas T Gray, Staci A Sorensen, Tim Dolbeare,[...]. Nat Neurosci 2016
695
6

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.
Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander,[...]. Proc Natl Acad Sci U S A 2005
6

Cre reporter strains produced by targeted insertion of EYFP and ECFP into the ROSA26 locus.
S Srinivas, T Watanabe, C S Lin, C M William, Y Tanabe, T M Jessell, F Costantini. BMC Dev Biol 2001
6

Molecular Architecture of the Mouse Nervous System.
Amit Zeisel, Hannah Hochgerner, Peter Lönnerberg, Anna Johnsson, Fatima Memic, Job van der Zwan, Martin Häring, Emelie Braun, Lars E Borm, Gioele La Manno,[...]. Cell 2018
672
5

CRISPR-Cas9 knockin mice for genome editing and cancer modeling.
Randall J Platt, Sidi Chen, Yang Zhou, Michael J Yim, Lukasz Swiech, Hannah R Kempton, James E Dahlman, Oren Parnas, Thomas M Eisenhaure, Marko Jovanovic,[...]. Cell 2014
860
5

A developmental switch in the response of DRG neurons to ETS transcription factor signaling.
Simon Hippenmeyer, Eline Vrieseling, Markus Sigrist, Thomas Portmann, Celia Laengle, David R Ladle, Silvia Arber. PLoS Biol 2005
645
5

Targeting Cre recombinase to specific neuron populations with bacterial artificial chromosome constructs.
Shiaoching Gong, Martin Doughty, Carroll R Harbaugh, Alexander Cummins, Mary E Hatten, Nathaniel Heintz, Charles R Gerfen. J Neurosci 2007
514
5

A global double-fluorescent Cre reporter mouse.
Mandar Deepak Muzumdar, Bosiljka Tasic, Kazunari Miyamichi, Ling Li, Liqun Luo. Genesis 2007
5

A next-generation dual-recombinase system for time- and host-specific targeting of pancreatic cancer.
Nina Schönhuber, Barbara Seidler, Kathleen Schuck, Christian Veltkamp, Christina Schachtler, Magdalena Zukowska, Stefan Eser, Thorsten B Feyerabend, Mariel C Paul, Philipp Eser,[...]. Nat Med 2014
124
4

Quantitative assessment of tactile allodynia in the rat paw.
S R Chaplan, F W Bach, J W Pogrel, J M Chung, T L Yaksh. J Neurosci Methods 1994
4

Brain structure. Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq.
Amit Zeisel, Ana B Muñoz-Manchado, Simone Codeluppi, Peter Lönnerberg, Gioele La Manno, Anna Juréus, Sueli Marques, Hermany Munguba, Liqun He, Christer Betsholtz,[...]. Science 2015
4

A toolbox of Cre-dependent optogenetic transgenic mice for light-induced activation and silencing.
Linda Madisen, Tianyi Mao, Henner Koch, Jia-min Zhuo, Antal Berenyi, Shigeyoshi Fujisawa, Yun-Wei A Hsu, Alfredo J Garcia, Xuan Gu, Sebastien Zanella,[...]. Nat Neurosci 2012
689
4

A Cellular Resolution Map of Barrel Cortex Activity during Tactile Behavior.
Simon P Peron, Jeremy Freeman, Vijay Iyer, Caiying Guo, Karel Svoboda. Neuron 2015
143
4


A gene expression atlas of the central nervous system based on bacterial artificial chromosomes.
Shiaoching Gong, Chen Zheng, Martin L Doughty, Kasia Losos, Nicholas Didkovsky, Uta B Schambra, Norma J Nowak, Alexandra Joyner, Gabrielle Leblanc, Mary E Hatten,[...]. Nature 2003
4

Development and Functional Diversification of Cortical Interneurons.
Lynette Lim, Da Mi, Alfredo Llorca, Oscar Marín. Neuron 2018
154
4

Green fluorescent protein expression and colocalization with calretinin, parvalbumin, and somatostatin in the GAD67-GFP knock-in mouse.
Nobuaki Tamamaki, Yuchio Yanagawa, Ryohei Tomioka, Jun-Ichi Miyazaki, Kunihiko Obata, Takeshi Kaneko. J Comp Neurol 2003
922
4

Hippocampal GABAergic Inhibitory Interneurons.
Kenneth A Pelkey, Ramesh Chittajallu, Michael T Craig, Ludovic Tricoire, Jason C Wester, Chris J McBain. Physiol Rev 2017
241
4

Rapid, reversible activation of AgRP neurons drives feeding behavior in mice.
Michael J Krashes, Shuichi Koda, ChianPing Ye, Sarah C Rogan, Andrew C Adams, Daniel S Cusher, Eleftheria Maratos-Flier, Bryan L Roth, Bradford B Lowell. J Clin Invest 2011
735
4

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.
Mark D Robinson, Davis J McCarthy, Gordon K Smyth. Bioinformatics 2010
4

NIH Image to ImageJ: 25 years of image analysis.
Caroline A Schneider, Wayne S Rasband, Kevin W Eliceiri. Nat Methods 2012
4


Endothelial cells are progenitors of cardiac pericytes and vascular smooth muscle cells.
Qi Chen, Hui Zhang, Yang Liu, Susanne Adams, Hanna Eilken, Martin Stehling, Monica Corada, Elisabetta Dejana, Bin Zhou, Ralf H Adams. Nat Commun 2016
115
4

Identification of stem cells in small intestine and colon by marker gene Lgr5.
Nick Barker, Johan H van Es, Jeroen Kuipers, Pekka Kujala, Maaike van den Born, Miranda Cozijnsen, Andrea Haegebarth, Jeroen Korving, Harry Begthel, Peter J Peters,[...]. Nature 2007
4

Inhibition of inhibition in visual cortex: the logic of connections between molecularly distinct interneurons.
Carsten K Pfeffer, Mingshan Xue, Miao He, Z Josh Huang, Massimo Scanziani. Nat Neurosci 2013
637
3

Hierarchical organization of cortical and thalamic connectivity.
Julie A Harris, Stefan Mihalas, Karla E Hirokawa, Jennifer D Whitesell, Hannah Choi, Amy Bernard, Phillip Bohn, Shiella Caldejon, Linzy Casal, Andrew Cho,[...]. Nature 2019
83
3

Petilla terminology: nomenclature of features of GABAergic interneurons of the cerebral cortex.
Giorgio A Ascoli, Lidia Alonso-Nanclares, Stewart A Anderson, German Barrionuevo, Ruth Benavides-Piccione, Andreas Burkhalter, György Buzsáki, Bruno Cauli, Javier Defelipe, Alfonso Fairén,[...]. Nat Rev Neurosci 2008
912
3

The largest group of superficial neocortical GABAergic interneurons expresses ionotropic serotonin receptors.
SooHyun Lee, Jens Hjerling-Leffler, Edward Zagha, Gord Fishell, Bernardo Rudy. J Neurosci 2010
355
3



Viral-genetic tracing of the input-output organization of a central noradrenaline circuit.
Lindsay A Schwarz, Kazunari Miyamichi, Xiaojing J Gao, Kevin T Beier, Brandon Weissbourd, Katherine E DeLoach, Jing Ren, Sandy Ibanes, Robert C Malenka, Eric J Kremer,[...]. Nature 2015
308
3

Strategies and Tools for Combinatorial Targeting of GABAergic Neurons in Mouse Cerebral Cortex.
Miao He, Jason Tucciarone, SooHyun Lee, Maximiliano José Nigro, Yongsoo Kim, Jesse Maurica Levine, Sean Michael Kelly, Illya Krugikov, Priscilla Wu, Yang Chen,[...]. Neuron 2016
106
3

Shared and distinct transcriptomic cell types across neocortical areas.
Bosiljka Tasic, Zizhen Yao, Lucas T Graybuck, Kimberly A Smith, Thuc Nghi Nguyen, Darren Bertagnolli, Jeff Goldy, Emma Garren, Michael N Economo, Sarada Viswanathan,[...]. Nature 2018
372
3

Analysis of lung tumor initiation and progression using conditional expression of oncogenic K-ras.
E L Jackson, N Willis, K Mercer, R T Bronson, D Crowley, R Montoya, T Jacks, D A Tuveson. Genes Dev 2001
3


Genetic fate mapping reveals that the caudal ganglionic eminence produces a large and diverse population of superficial cortical interneurons.
Goichi Miyoshi, Jens Hjerling-Leffler, Theofanis Karayannis, Vitor H Sousa, Simon J B Butt, James Battiste, Jane E Johnson, Robert P Machold, Gord Fishell. J Neurosci 2010
356
3

Regulation of Cre recombinase activity by mutated estrogen receptor ligand-binding domains.
R Feil, J Wagner, D Metzger, P Chambon. Biochem Biophys Res Commun 1997
677
3

Modification of gene activity in mouse embryos in utero by a tamoxifen-inducible form of Cre recombinase.
P S Danielian, D Muccino, D H Rowitch, S K Michael, A P McMahon. Curr Biol 1998
987
3

Fate mapping Nkx2.1-lineage cells in the mouse telencephalon.
Qing Xu, Melissa Tam, Stewart A Anderson. J Comp Neurol 2008
341
3

A blueprint for the spatiotemporal origins of mouse hippocampal interneuron diversity.
Ludovic Tricoire, Kenneth A Pelkey, Brian E Erkkila, Brian W Jeffries, Xiaoqing Yuan, Chris J McBain. J Neurosci 2011
188
3

Division-coupled astrocytic differentiation and age-related depletion of neural stem cells in the adult hippocampus.
Juan M Encinas, Tatyana V Michurina, Natalia Peunova, June-Hee Park, Julie Tordo, Daniel A Peterson, Gord Fishell, Alex Koulakov, Grigori Enikolopov. Cell Stem Cell 2011
535
3

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells.
Cole Trapnell, Davide Cacchiarelli, Jonna Grimsby, Prapti Pokharel, Shuqiang Li, Michael Morse, Niall J Lennon, Kenneth J Livak, Tarjei S Mikkelsen, John L Rinn. Nat Biotechnol 2014
3


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.