Linda Madisen, Theresa A Zwingman, Susan M Sunkin, Seung Wook Oh, Hatim A Zariwala, Hong Gu, Lydia L Ng, Richard D Palmiter, Michael J Hawrylycz, Allan R Jones, Ed S Lein, Hongkui Zeng. Nat Neurosci 2010
Times Cited: 3535
Times Cited: 3535
Times Cited
Times Co-cited
Similarity
A resource of Cre driver lines for genetic targeting of GABAergic neurons in cerebral cortex.
Hiroki Taniguchi, Miao He, Priscilla Wu, Sangyong Kim, Raehum Paik, Ken Sugino, Duda Kvitsiani, Yu Fu, Jiangteng Lu, Ying Lin,[...]. Neuron 2011
Hiroki Taniguchi, Miao He, Priscilla Wu, Sangyong Kim, Raehum Paik, Ken Sugino, Duda Kvitsiani, Yu Fu, Jiangteng Lu, Ying Lin,[...]. Neuron 2011
9
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
8
Integrating single-cell transcriptomic data across different conditions, technologies, and species.
Andrew Butler, Paul Hoffman, Peter Smibert, Efthymia Papalexi, Rahul Satija. Nat Biotechnol 2018
Andrew Butler, Paul Hoffman, Peter Smibert, Efthymia Papalexi, Rahul Satija. Nat Biotechnol 2018
7
GENSAT BAC cre-recombinase driver lines to study the functional organization of cerebral cortical and basal ganglia circuits.
Charles R Gerfen, Ronald Paletzki, Nathaniel Heintz. Neuron 2013
Charles R Gerfen, Ronald Paletzki, Nathaniel Heintz. Neuron 2013
6
A Suite of Transgenic Driver and Reporter Mouse Lines with Enhanced Brain-Cell-Type Targeting and Functionality.
Tanya L Daigle, Linda Madisen, Travis A Hage, Matthew T Valley, Ulf Knoblich, Rylan S Larsen, Marc M Takeno, Lawrence Huang, Hong Gu, Rachael Larsen,[...]. Cell 2018
Tanya L Daigle, Linda Madisen, Travis A Hage, Matthew T Valley, Ulf Knoblich, Rylan S Larsen, Marc M Takeno, Lawrence Huang, Hong Gu, Rachael Larsen,[...]. Cell 2018
6
Dimensionality reduction for visualizing single-cell data using UMAP.
Etienne Becht, Leland McInnes, John Healy, Charles-Antoine Dutertre, Immanuel W H Kwok, Lai Guan Ng, Florent Ginhoux, Evan W Newell. Nat Biotechnol 2018
Etienne Becht, Leland McInnes, John Healy, Charles-Antoine Dutertre, Immanuel W H Kwok, Lai Guan Ng, Florent Ginhoux, Evan W Newell. Nat Biotechnol 2018
6
Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.
Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander,[...]. Proc Natl Acad Sci U S A 2005
Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander,[...]. Proc Natl Acad Sci U S A 2005
6
Comprehensive Integration of Single-Cell Data.
Tim Stuart, Andrew Butler, Paul Hoffman, Christoph Hafemeister, Efthymia Papalexi, William M Mauck, Yuhan Hao, Marlon Stoeckius, Peter Smibert, Rahul Satija. Cell 2019
Tim Stuart, Andrew Butler, Paul Hoffman, Christoph Hafemeister, Efthymia Papalexi, William M Mauck, Yuhan Hao, Marlon Stoeckius, Peter Smibert, Rahul Satija. Cell 2019
6
Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
6
Ultrasensitive fluorescent proteins for imaging neuronal activity.
Tsai-Wen Chen, Trevor J Wardill, Yi Sun, Stefan R Pulver, Sabine L Renninger, Amy Baohan, Eric R Schreiter, Rex A Kerr, Michael B Orger, Vivek Jayaraman,[...]. Nature 2013
Tsai-Wen Chen, Trevor J Wardill, Yi Sun, Stefan R Pulver, Sabine L Renninger, Amy Baohan, Eric R Schreiter, Rex A Kerr, Michael B Orger, Vivek Jayaraman,[...]. Nature 2013
5
STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
5
A Designer AAV Variant Permits Efficient Retrograde Access to Projection Neurons.
D Gowanlock R Tervo, Bum-Yeol Hwang, Sarada Viswanathan, Thomas Gaj, Maria Lavzin, Kimberly D Ritola, Sarah Lindo, Susan Michael, Elena Kuleshova, David Ojala,[...]. Neuron 2016
D Gowanlock R Tervo, Bum-Yeol Hwang, Sarada Viswanathan, Thomas Gaj, Maria Lavzin, Kimberly D Ritola, Sarah Lindo, Susan Michael, Elena Kuleshova, David Ojala,[...]. Neuron 2016
4
A disinhibitory circuit mediates motor integration in the somatosensory cortex.
Soohyun Lee, Illya Kruglikov, Z Josh Huang, Gord Fishell, Bernardo Rudy. Nat Neurosci 2013
Soohyun Lee, Illya Kruglikov, Z Josh Huang, Gord Fishell, Bernardo Rudy. Nat Neurosci 2013
4
Targeting Cre recombinase to specific neuron populations with bacterial artificial chromosome constructs.
Shiaoching Gong, Martin Doughty, Carroll R Harbaugh, Alexander Cummins, Mary E Hatten, Nathaniel Heintz, Charles R Gerfen. J Neurosci 2007
Shiaoching Gong, Martin Doughty, Carroll R Harbaugh, Alexander Cummins, Mary E Hatten, Nathaniel Heintz, Charles R Gerfen. J Neurosci 2007
4
Shared and distinct transcriptomic cell types across neocortical areas.
Bosiljka Tasic, Zizhen Yao, Lucas T Graybuck, Kimberly A Smith, Thuc Nghi Nguyen, Darren Bertagnolli, Jeff Goldy, Emma Garren, Michael N Economo, Sarada Viswanathan,[...]. Nature 2018
Bosiljka Tasic, Zizhen Yao, Lucas T Graybuck, Kimberly A Smith, Thuc Nghi Nguyen, Darren Bertagnolli, Jeff Goldy, Emma Garren, Michael N Economo, Sarada Viswanathan,[...]. Nature 2018
4
High-performance calcium sensors for imaging activity in neuronal populations and microcompartments.
Hod Dana, Yi Sun, Boaz Mohar, Brad K Hulse, Aaron M Kerlin, Jeremy P Hasseman, Getahun Tsegaye, Arthur Tsang, Allan Wong, Ronak Patel,[...]. Nat Methods 2019
Hod Dana, Yi Sun, Boaz Mohar, Brad K Hulse, Aaron M Kerlin, Jeremy P Hasseman, Getahun Tsegaye, Arthur Tsang, Allan Wong, Ronak Patel,[...]. Nat Methods 2019
4
Transgenic mice for intersectional targeting of neural sensors and effectors with high specificity and performance.
Linda Madisen, Aleena R Garner, Daisuke Shimaoka, Amy S Chuong, Nathan C Klapoetke, Lu Li, Alexander van der Bourg, Yusuke Niino, Ladan Egolf, Claudio Monetti,[...]. Neuron 2015
Linda Madisen, Aleena R Garner, Daisuke Shimaoka, Amy S Chuong, Nathan C Klapoetke, Lu Li, Alexander van der Bourg, Yusuke Niino, Ladan Egolf, Claudio Monetti,[...]. Neuron 2015
4
Engineered AAVs for efficient noninvasive gene delivery to the central and peripheral nervous systems.
Ken Y Chan, Min J Jang, Bryan B Yoo, Alon Greenbaum, Namita Ravi, Wei-Li Wu, Luis Sánchez-Guardado, Carlos Lois, Sarkis K Mazmanian, Benjamin E Deverman,[...]. Nat Neurosci 2017
Ken Y Chan, Min J Jang, Bryan B Yoo, Alon Greenbaum, Namita Ravi, Wei-Li Wu, Luis Sánchez-Guardado, Carlos Lois, Sarkis K Mazmanian, Benjamin E Deverman,[...]. Nat Neurosci 2017
4
Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method.
K J Livak, T D Schmittgen. Methods 2001
K J Livak, T D Schmittgen. Methods 2001
4
SCENIC: single-cell regulatory network inference and clustering.
Sara Aibar, Carmen Bravo González-Blas, Thomas Moerman, Vân Anh Huynh-Thu, Hana Imrichova, Gert Hulselmans, Florian Rambow, Jean-Christophe Marine, Pierre Geurts, Jan Aerts,[...]. Nat Methods 2017
Sara Aibar, Carmen Bravo González-Blas, Thomas Moerman, Vân Anh Huynh-Thu, Hana Imrichova, Gert Hulselmans, Florian Rambow, Jean-Christophe Marine, Pierre Geurts, Jan Aerts,[...]. Nat Methods 2017
4
NIH Image to ImageJ: 25 years of image analysis.
Caroline A Schneider, Wayne S Rasband, Kevin W Eliceiri. Nat Methods 2012
Caroline A Schneider, Wayne S Rasband, Kevin W Eliceiri. Nat Methods 2012
4
Tie2-Cre transgenic mice: a new model for endothelial cell-lineage analysis in vivo.
Y Y Kisanuki, R E Hammer, J Miyazaki , S C Williams, J A Richardson, M Yanagisawa. Dev Biol 2001
Y Y Kisanuki, R E Hammer, J Miyazaki , S C Williams, J A Richardson, M Yanagisawa. Dev Biol 2001
4
GABAergic Interneurons in the Neocortex: From Cellular Properties to Circuits.
Robin Tremblay, Soohyun Lee, Bernardo Rudy. Neuron 2016
Robin Tremblay, Soohyun Lee, Bernardo Rudy. Neuron 2016
4
The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas.
Quanxin Wang, Song-Lin Ding, Yang Li, Josh Royall, David Feng, Phil Lesnar, Nile Graddis, Maitham Naeemi, Benjamin Facer, Anh Ho,[...]. Cell 2020
Quanxin Wang, Song-Lin Ding, Yang Li, Josh Royall, David Feng, Phil Lesnar, Nile Graddis, Maitham Naeemi, Benjamin Facer, Anh Ho,[...]. Cell 2020
4
Reconstruction of 1,000 Projection Neurons Reveals New Cell Types and Organization of Long-Range Connectivity in the Mouse Brain.
Johan Winnubst, Erhan Bas, Tiago A Ferreira, Zhuhao Wu, Michael N Economo, Patrick Edson, Ben J Arthur, Christopher Bruns, Konrad Rokicki, David Schauder,[...]. Cell 2019
Johan Winnubst, Erhan Bas, Tiago A Ferreira, Zhuhao Wu, Michael N Economo, Patrick Edson, Ben J Arthur, Christopher Bruns, Konrad Rokicki, David Schauder,[...]. Cell 2019
3
A developmental switch in the response of DRG neurons to ETS transcription factor signaling.
Simon Hippenmeyer, Eline Vrieseling, Markus Sigrist, Thomas Portmann, Celia Laengle, David R Ladle, Silvia Arber. PLoS Biol 2005
Simon Hippenmeyer, Eline Vrieseling, Markus Sigrist, Thomas Portmann, Celia Laengle, David R Ladle, Silvia Arber. PLoS Biol 2005
3
Canonical microcircuits for predictive coding.
Andre M Bastos, W Martin Usrey, Rick A Adams, George R Mangun, Pascal Fries, Karl J Friston. Neuron 2012
Andre M Bastos, W Martin Usrey, Rick A Adams, George R Mangun, Pascal Fries, Karl J Friston. Neuron 2012
3
Channelrhodopsin-2-assisted circuit mapping of long-range callosal projections.
Leopoldo Petreanu, Daniel Huber, Aleksander Sobczyk, Karel Svoboda. Nat Neurosci 2007
Leopoldo Petreanu, Daniel Huber, Aleksander Sobczyk, Karel Svoboda. Nat Neurosci 2007
3
The subcellular organization of neocortical excitatory connections.
Leopoldo Petreanu, Tianyi Mao, Scott M Sternson, Karel Svoboda. Nature 2009
Leopoldo Petreanu, Tianyi Mao, Scott M Sternson, Karel Svoboda. Nature 2009
3
The neocortical circuit: themes and variations.
Kenneth D Harris, Gordon M G Shepherd. Nat Neurosci 2015
Kenneth D Harris, Gordon M G Shepherd. Nat Neurosci 2015
3
Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein.
Nathan C Shaner, Robert E Campbell, Paul A Steinbach, Ben N G Giepmans, Amy E Palmer, Roger Y Tsien. Nat Biotechnol 2004
Nathan C Shaner, Robert E Campbell, Paul A Steinbach, Ben N G Giepmans, Amy E Palmer, Roger Y Tsien. Nat Biotechnol 2004
3
Hierarchical organization of cortical and thalamic connectivity.
Julie A Harris, Stefan Mihalas, Karla E Hirokawa, Jennifer D Whitesell, Hannah Choi, Amy Bernard, Phillip Bohn, Shiella Caldejon, Linzy Casal, Andrew Cho,[...]. Nature 2019
Julie A Harris, Stefan Mihalas, Karla E Hirokawa, Jennifer D Whitesell, Hannah Choi, Amy Bernard, Phillip Bohn, Shiella Caldejon, Linzy Casal, Andrew Cho,[...]. Nature 2019
3
Analysis of lung tumor initiation and progression using conditional expression of oncogenic K-ras.
E L Jackson, N Willis, K Mercer, R T Bronson, D Crowley, R Montoya, T Jacks, D A Tuveson. Genes Dev 2001
E L Jackson, N Willis, K Mercer, R T Bronson, D Crowley, R Montoya, T Jacks, D A Tuveson. Genes Dev 2001
3
Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities.
Sven Heinz, Christopher Benner, Nathanael Spann, Eric Bertolino, Yin C Lin, Peter Laslo, Jason X Cheng, Cornelis Murre, Harinder Singh, Christopher K Glass. Mol Cell 2010
Sven Heinz, Christopher Benner, Nathanael Spann, Eric Bertolino, Yin C Lin, Peter Laslo, Jason X Cheng, Cornelis Murre, Harinder Singh, Christopher K Glass. Mol Cell 2010
3
Model-based analysis of ChIP-Seq (MACS).
Yong Zhang, Tao Liu, Clifford A Meyer, Jérôme Eeckhoute, David S Johnson, Bradley E Bernstein, Chad Nusbaum, Richard M Myers, Myles Brown, Wei Li,[...]. Genome Biol 2008
Yong Zhang, Tao Liu, Clifford A Meyer, Jérôme Eeckhoute, David S Johnson, Bradley E Bernstein, Chad Nusbaum, Richard M Myers, Myles Brown, Wei Li,[...]. Genome Biol 2008
3
3
The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
3
Brain-wide Maps Reveal Stereotyped Cell-Type-Based Cortical Architecture and Subcortical Sexual Dimorphism.
Yongsoo Kim, Guangyu Robert Yang, Kith Pradhan, Kannan Umadevi Venkataraju, Mihail Bota, Luis Carlos García Del Molino, Greg Fitzgerald, Keerthi Ram, Miao He, Jesse Maurica Levine,[...]. Cell 2017
Yongsoo Kim, Guangyu Robert Yang, Kith Pradhan, Kannan Umadevi Venkataraju, Mihail Bota, Luis Carlos García Del Molino, Greg Fitzgerald, Keerthi Ram, Miao He, Jesse Maurica Levine,[...]. Cell 2017
3
Multiplexed Cre-dependent selection yields systemic AAVs for targeting distinct brain cell types.
Sripriya Ravindra Kumar, Timothy F Miles, Xinhong Chen, David Brown, Tatyana Dobreva, Qin Huang, Xiaozhe Ding, Yicheng Luo, Pétur H Einarsson, Alon Greenbaum,[...]. Nat Methods 2020
Sripriya Ravindra Kumar, Timothy F Miles, Xinhong Chen, David Brown, Tatyana Dobreva, Qin Huang, Xiaozhe Ding, Yicheng Luo, Pétur H Einarsson, Alon Greenbaum,[...]. Nat Methods 2020
6
Strategies and Tools for Combinatorial Targeting of GABAergic Neurons in Mouse Cerebral Cortex.
Miao He, Jason Tucciarone, SooHyun Lee, Maximiliano José Nigro, Yongsoo Kim, Jesse Maurica Levine, Sean Michael Kelly, Illya Krugikov, Priscilla Wu, Yang Chen,[...]. Neuron 2016
Miao He, Jason Tucciarone, SooHyun Lee, Maximiliano José Nigro, Yongsoo Kim, Jesse Maurica Levine, Sean Michael Kelly, Illya Krugikov, Priscilla Wu, Yang Chen,[...]. Neuron 2016
3
Genetic Dissection of Neural Circuits: A Decade of Progress.
Liqun Luo, Edward M Callaway, Karel Svoboda. Neuron 2018
Liqun Luo, Edward M Callaway, Karel Svoboda. Neuron 2018
3
Transgenic strategies for combinatorial expression of fluorescent proteins in the nervous system.
Jean Livet, Tamily A Weissman, Hyuno Kang, Ryan W Draft, Ju Lu, Robyn A Bennis, Joshua R Sanes, Jeff W Lichtman. Nature 2007
Jean Livet, Tamily A Weissman, Hyuno Kang, Ryan W Draft, Ju Lu, Robyn A Bennis, Joshua R Sanes, Jeff W Lichtman. Nature 2007
3
Targeting cells with single vectors using multiple-feature Boolean logic.
Lief E Fenno, Joanna Mattis, Charu Ramakrishnan, Minsuk Hyun, Soo Yeun Lee, Miao He, Jason Tucciarone, Aslihan Selimbeyoglu, Andre Berndt, Logan Grosenick,[...]. Nat Methods 2014
Lief E Fenno, Joanna Mattis, Charu Ramakrishnan, Minsuk Hyun, Soo Yeun Lee, Miao He, Jason Tucciarone, Aslihan Selimbeyoglu, Andre Berndt, Logan Grosenick,[...]. Nat Methods 2014
3
Cortical interneurons that specialize in disinhibitory control.
Hyun-Jae Pi, Balázs Hangya, Duda Kvitsiani, Joshua I Sanders, Z Josh Huang, Adam Kepecs. Nature 2013
Hyun-Jae Pi, Balázs Hangya, Duda Kvitsiani, Joshua I Sanders, Z Josh Huang, Adam Kepecs. Nature 2013
3
Inhibition of inhibition in visual cortex: the logic of connections between molecularly distinct interneurons.
Carsten K Pfeffer, Mingshan Xue, Miao He, Z Josh Huang, Massimo Scanziani. Nat Neurosci 2013
Carsten K Pfeffer, Mingshan Xue, Miao He, Z Josh Huang, Massimo Scanziani. Nat Neurosci 2013
3
Dissecting local circuits: parvalbumin interneurons underlie broad feedback control of olfactory bulb output.
Kazunari Miyamichi, Yael Shlomai-Fuchs, Marvin Shu, Brandon C Weissbourd, Liqun Luo, Adi Mizrahi. Neuron 2013
Kazunari Miyamichi, Yael Shlomai-Fuchs, Marvin Shu, Brandon C Weissbourd, Liqun Luo, Adi Mizrahi. Neuron 2013
3
Intact-Brain Analyses Reveal Distinct Information Carried by SNc Dopamine Subcircuits.
Talia N Lerner, Carrie Shilyansky, Thomas J Davidson, Kathryn E Evans, Kevin T Beier, Kelly A Zalocusky, Ailey K Crow, Robert C Malenka, Liqun Luo, Raju Tomer,[...]. Cell 2015
Talia N Lerner, Carrie Shilyansky, Thomas J Davidson, Kathryn E Evans, Kevin T Beier, Kelly A Zalocusky, Ailey K Crow, Robert C Malenka, Liqun Luo, Raju Tomer,[...]. Cell 2015
3
Tales from the crypt: new insights into intestinal stem cells.
Helmuth Gehart, Hans Clevers. Nat Rev Gastroenterol Hepatol 2019
Helmuth Gehart, Hans Clevers. Nat Rev Gastroenterol Hepatol 2019
3
Evolutionary divergence of platelet-derived growth factor alpha receptor signaling mechanisms.
T Guy Hamilton, Richard A Klinghoffer, Philip D Corrin, Philippe Soriano. Mol Cell Biol 2003
T Guy Hamilton, Richard A Klinghoffer, Philip D Corrin, Philippe Soriano. Mol Cell Biol 2003
3
Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.