A citation-based method for searching scientific literature

David Kokel, Jennifer Bryan, Christian Laggner, Rick White, Chung Yan J Cheung, Rita Mateus, David Healey, Sonia Kim, Andreas A Werdich, Stephen J Haggarty, Calum A Macrae, Brian Shoichet, Randall T Peterson. Nat Chem Biol 2010
Times Cited: 332







List of co-cited articles
1010 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Zebrafish behavioral profiling links drugs to biological targets and rest/wake regulation.
Jason Rihel, David A Prober, Anthony Arvanites, Kelvin Lam, Steven Zimmerman, Sumin Jang, Stephen J Haggarty, David Kokel, Lee L Rubin, Randall T Peterson,[...]. Science 2010
462
47

The zebrafish reference genome sequence and its relationship to the human genome.
Kerstin Howe, Matthew D Clark, Carlos F Torroja, James Torrance, Camille Berthelot, Matthieu Muffato, John E Collins, Sean Humphray, Karen McLaren, Lucy Matthews,[...]. Nature 2013
28

Stages of embryonic development of the zebrafish.
C B Kimmel, W W Ballard, S R Kimmel, B Ullmann, T F Schilling. Dev Dyn 1995
24

Zebrafish as tools for drug discovery.
Calum A MacRae, Randall T Peterson. Nat Rev Drug Discov 2015
521
18

Zebrafish behavioral profiling identifies multitarget antipsychotic-like compounds.
Giancarlo Bruni, Andrew J Rennekamp, Andrea Velenich, Matthew McCarroll, Leo Gendelev, Ethan Fertsch, Jack Taylor, Parth Lakhani, Dennis Lensen, Tama Evron,[...]. Nat Chem Biol 2016
69
23

Identification of nonvisual photomotor response cells in the vertebrate hindbrain.
David Kokel, Timothy W Dunn, Misha B Ahrens, Rüdiger Alshut, Chung Yan J Cheung, Louis Saint-Amant, Giancarlo Bruni, Rita Mateus, Tjakko J van Ham, Tomoya Shiraki,[...]. J Neurosci 2013
70
21


Multidimensional in vivo hazard assessment using zebrafish.
Lisa Truong, David M Reif, Lindsey St Mary, Mitra C Geier, Hao D Truong, Robert L Tanguay. Toxicol Sci 2014
181
13

High-throughput characterization of chemical-associated embryonic behavioral changes predicts teratogenic outcomes.
David M Reif, Lisa Truong, David Mandrell, Skylar Marvel, Guozhu Zhang, Robert L Tanguay. Arch Toxicol 2016
80
16


Towards a comprehensive catalog of zebrafish behavior 1.0 and beyond.
Allan V Kalueff, Michael Gebhardt, Adam Michael Stewart, Jonathan M Cachat, Mallorie Brimmer, Jonathan S Chawla, Cassandra Craddock, Evan J Kyzar, Andrew Roth, Samuel Landsman,[...]. Zebrafish 2013
470
12

Zebrafish as an emerging model for studying complex brain disorders.
Allan V Kalueff, Adam Michael Stewart, Robert Gerlai. Trends Pharmacol Sci 2014
491
12

Zebrafish models for translational neuroscience research: from tank to bedside.
Adam Michael Stewart, Oliver Braubach, Jan Spitsbergen, Robert Gerlai, Allan V Kalueff. Trends Neurosci 2014
340
11

15 years of zebrafish chemical screening.
Andrew J Rennekamp, Randall T Peterson. Curr Opin Chem Biol 2015
155
11

Comparability of behavioural assays using zebrafish larvae to assess neurotoxicity.
J Legradi, N el Abdellaoui, M van Pomeren, J Legler. Environ Sci Pollut Res Int 2015
45
22

Acute neuroactive drug exposures alter locomotor activity in larval zebrafish.
T D Irons, R C MacPhail, D L Hunter, S Padilla. Neurotoxicol Teratol 2010
170
10

Efficient genome editing in zebrafish using a CRISPR-Cas system.
Woong Y Hwang, Yanfang Fu, Deepak Reyon, Morgan L Maeder, Shengdar Q Tsai, Jeffry D Sander, Randall T Peterson, J-R Joanna Yeh, J Keith Joung. Nat Biotechnol 2013
10


Chemobehavioural phenomics and behaviour-based psychiatric drug discovery in the zebrafish.
David Kokel, Randall T Peterson. Brief Funct Genomic Proteomic 2008
79
12

Zebrafish developmental screening of the ToxCast™ Phase I chemical library.
S Padilla, D Corum, B Padnos, D L Hunter, A Beam, K A Houck, N Sipes, N Kleinstreuer, T Knudsen, D J Dix,[...]. Reprod Toxicol 2012
204
9

Animal models of human disease: zebrafish swim into view.
Graham J Lieschke, Peter D Currie. Nat Rev Genet 2007
9


The comparative neuroanatomy and neurochemistry of zebrafish CNS systems of relevance to human neuropsychiatric diseases.
P Panula, Y-C Chen, M Priyadarshini, H Kudo, S Semenova, M Sundvik, V Sallinen. Neurobiol Dis 2010
250
9

Whole-brain functional imaging at cellular resolution using light-sheet microscopy.
Misha B Ahrens, Michael B Orger, Drew N Robson, Jennifer M Li, Philipp J Keller. Nat Methods 2013
638
9

Behavioral screening for neuroactive drugs in zebrafish.
Jason Rihel, Alexander F Schier. Dev Neurobiol 2012
82
10

Fish embryo toxicity test: identification of compounds with weak toxicity and analysis of behavioral effects to improve prediction of acute toxicity for neurotoxic compounds.
Nils Klüver, Maria König, Julia Ortmann, Riccardo Massei, Albrecht Paschke, Ralph Kühne, Stefan Scholz. Environ Sci Technol 2015
61
13

Reverse genetic screening reveals poor correlation between morpholino-induced and mutant phenotypes in zebrafish.
F O Kok, M Shin, C-W Ni, A Gupta, A S Grosse, A van Impel, B C Kirchmaier, J Peterson-Maduro, G Kourkoulis, I Male,[...]. Dev Cell 2015
486
8

Drug screening in Scn1a zebrafish mutant identifies clemizole as a potential Dravet syndrome treatment.
Scott C Baraban, Matthew T Dinday, Gabriela A Hortopan. Nat Commun 2013
219
8

Hypocretin/orexin overexpression induces an insomnia-like phenotype in zebrafish.
David A Prober, Jason Rihel, Anthony A Onah, Rou-Jia Sung, Alexander F Schier. J Neurosci 2006
287
8


Automated zebrafish chorion removal and single embryo placement: optimizing throughput of zebrafish developmental toxicity screens.
David Mandrell, Lisa Truong, Caleb Jephson, Mushfiqur R Sarker, Aaron Moore, Christopher Lang, Michael T Simonich, Robert L Tanguay. J Lab Autom 2012
112
8

In vivo drug discovery in the zebrafish.
Leonard I Zon, Randall T Peterson. Nat Rev Drug Discov 2005
905
8

Whole-brain activity mapping onto a zebrafish brain atlas.
Owen Randlett, Caroline L Wee, Eva A Naumann, Onyeka Nnaemeka, David Schoppik, James E Fitzgerald, Ruben Portugues, Alix M B Lacoste, Clemens Riegler, Florian Engert,[...]. Nat Methods 2015
207
8

Locomotion in larval zebrafish: Influence of time of day, lighting and ethanol.
R C MacPhail, J Brooks, D L Hunter, B Padnos, T D Irons, S Padilla. Neurotoxicology 2009
243
8

A KNIME-Based Analysis of the Zebrafish Photomotor Response Clusters the Phenotypes of 14 Classes of Neuroactive Molecules.
Daniëlle Copmans, Thorsten Meinl, Christian Dietz, Matthijs van Leeuwen, Julia Ortmann, Michael R Berthold, Peter A M de Witte. J Biomol Screen 2016
15
53

Using the zebrafish photomotor response for psychotropic drug screening.
David Kokel, Randall T Peterson. Methods Cell Biol 2011
57
14

Measuring thigmotaxis in larval zebrafish.
S J Schnörr, P J Steenbergen, M K Richardson, D L Champagne. Behav Brain Res 2012
161
8

Genetic compensation induced by deleterious mutations but not gene knockdowns.
Andrea Rossi, Zacharias Kontarakis, Claudia Gerri, Hendrik Nolte, Soraya Hölper, Marcus Krüger, Didier Y R Stainier. Nature 2015
701
7

Effective targeted gene 'knockdown' in zebrafish.
A Nasevicius, S C Ekker. Nat Genet 2000
7

Chemical modulation of memory formation in larval zebrafish.
Marc A Wolman, Roshan A Jain, Laura Liss, Michael Granato. Proc Natl Acad Sci U S A 2011
104
7

Prostaglandin E2 regulates vertebrate haematopoietic stem cell homeostasis.
Trista E North, Wolfram Goessling, Carl R Walkley, Claudia Lengerke, Kamden R Kopani, Allegra M Lord, Gerhard J Weber, Teresa V Bowman, Il-Ho Jang, Tilo Grosser,[...]. Nature 2007
803
7

Small molecule developmental screens reveal the logic and timing of vertebrate development.
R T Peterson, B A Link, J E Dowling, S L Schreiber. Proc Natl Acad Sci U S A 2000
385
7

Leveraging Large-scale Behavioral Profiling in Zebrafish to Explore Neuroactive Polypharmacology.
Matthew N McCarroll, Leo Gendelev, Michael J Keiser, David Kokel. ACS Chem Biol 2016
23
30

Estrogens Suppress a Behavioral Phenotype in Zebrafish Mutants of the Autism Risk Gene, CNTNAP2.
Ellen J Hoffman, Katherine J Turner, Joseph M Fernandez, Daniel Cifuentes, Marcus Ghosh, Sundas Ijaz, Roshan A Jain, Fumi Kubo, Brent R Bill, Herwig Baier,[...]. Neuron 2016
89
7


Age matters: Developmental stage of Danio rerio larvae influences photomotor response thresholds to diazinion or diphenhydramine.
Lauren A Kristofco, Luis Colon Cruz, Samuel P Haddad, Martine L Behra, C Kevin Chambliss, Bryan W Brooks. Aquat Toxicol 2016
37
18

Imaging escape and avoidance behavior in zebrafish larvae.
Ruth M Colwill, Robbert Creton. Rev Neurosci 2011
107
7

From Whole-Brain Data to Functional Circuit Models: The Zebrafish Optomotor Response.
Eva A Naumann, James E Fitzgerald, Timothy W Dunn, Jason Rihel, Haim Sompolinsky, Florian Engert. Cell 2016
115
7

Behavioral barcoding in the cloud: embracing data-intensive digital phenotyping in neuropharmacology.
David Kokel, Andrew J Rennekamp, Asmi H Shah, Urban Liebel, Randall T Peterson. Trends Biotechnol 2012
34
20

Locomotor activity in zebrafish embryos: a new method to assess developmental neurotoxicity.
Ingrid W T Selderslaghs, Jef Hooyberghs, Wim De Coen, Hilda E Witters. Neurotoxicol Teratol 2010
115
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.