A citation-based method for searching scientific literature

David Kokel, Jennifer Bryan, Christian Laggner, Rick White, Chung Yan J Cheung, Rita Mateus, David Healey, Sonia Kim, Andreas A Werdich, Stephen J Haggarty, Calum A Macrae, Brian Shoichet, Randall T Peterson. Nat Chem Biol 2010
Times Cited: 319







List of co-cited articles
1016 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Zebrafish behavioral profiling links drugs to biological targets and rest/wake regulation.
Jason Rihel, David A Prober, Anthony Arvanites, Kelvin Lam, Steven Zimmerman, Sumin Jang, Stephen J Haggarty, David Kokel, Lee L Rubin, Randall T Peterson,[...]. Science 2010
439
49

The zebrafish reference genome sequence and its relationship to the human genome.
Kerstin Howe, Matthew D Clark, Carlos F Torroja, James Torrance, Camille Berthelot, Matthieu Muffato, John E Collins, Sean Humphray, Karen McLaren, Lucy Matthews,[...]. Nature 2013
31

Stages of embryonic development of the zebrafish.
C B Kimmel, W W Ballard, S R Kimmel, B Ullmann, T F Schilling. Dev Dyn 1995
26

Zebrafish as tools for drug discovery.
Calum A MacRae, Randall T Peterson. Nat Rev Drug Discov 2015
450
20

Identification of nonvisual photomotor response cells in the vertebrate hindbrain.
David Kokel, Timothy W Dunn, Misha B Ahrens, Rüdiger Alshut, Chung Yan J Cheung, Louis Saint-Amant, Giancarlo Bruni, Rita Mateus, Tjakko J van Ham, Tomoya Shiraki,[...]. J Neurosci 2013
65
26

Zebrafish behavioral profiling identifies multitarget antipsychotic-like compounds.
Giancarlo Bruni, Andrew J Rennekamp, Andrea Velenich, Matthew McCarroll, Leo Gendelev, Ethan Fertsch, Jack Taylor, Parth Lakhani, Dennis Lensen, Tama Evron,[...]. Nat Chem Biol 2016
64
26


Multidimensional in vivo hazard assessment using zebrafish.
Lisa Truong, David M Reif, Lindsey St Mary, Mitra C Geier, Hao D Truong, Robert L Tanguay. Toxicol Sci 2014
170
14

Towards a comprehensive catalog of zebrafish behavior 1.0 and beyond.
Allan V Kalueff, Michael Gebhardt, Adam Michael Stewart, Jonathan M Cachat, Mallorie Brimmer, Jonathan S Chawla, Cassandra Craddock, Evan J Kyzar, Andrew Roth, Samuel Landsman,[...]. Zebrafish 2013
421
14

Zebrafish as an emerging model for studying complex brain disorders.
Allan V Kalueff, Adam Michael Stewart, Robert Gerlai. Trends Pharmacol Sci 2014
416
13


Behavioral screening for neuroactive drugs in zebrafish.
Jason Rihel, Alexander F Schier. Dev Neurobiol 2012
80
15

High-throughput characterization of chemical-associated embryonic behavioral changes predicts teratogenic outcomes.
David M Reif, Lisa Truong, David Mandrell, Skylar Marvel, Guozhu Zhang, Robert L Tanguay. Arch Toxicol 2016
71
16

15 years of zebrafish chemical screening.
Andrew J Rennekamp, Randall T Peterson. Curr Opin Chem Biol 2015
145
12

Efficient genome editing in zebrafish using a CRISPR-Cas system.
Woong Y Hwang, Yanfang Fu, Deepak Reyon, Morgan L Maeder, Shengdar Q Tsai, Jeffry D Sander, Randall T Peterson, J-R Joanna Yeh, J Keith Joung. Nat Biotechnol 2013
11

Effective targeted gene 'knockdown' in zebrafish.
A Nasevicius, S C Ekker. Nat Genet 2000
11

In vivo drug discovery in the zebrafish.
Leonard I Zon, Randall T Peterson. Nat Rev Drug Discov 2005
866
11

Zebrafish developmental screening of the ToxCast™ Phase I chemical library.
S Padilla, D Corum, B Padnos, D L Hunter, A Beam, K A Houck, N Sipes, N Kleinstreuer, T Knudsen, D J Dix,[...]. Reprod Toxicol 2012
186
10


Zebrafish models for translational neuroscience research: from tank to bedside.
Adam Michael Stewart, Oliver Braubach, Jan Spitsbergen, Robert Gerlai, Allan V Kalueff. Trends Neurosci 2014
295
10

Reverse genetic screening reveals poor correlation between morpholino-induced and mutant phenotypes in zebrafish.
F O Kok, M Shin, C-W Ni, A Gupta, A S Grosse, A van Impel, B C Kirchmaier, J Peterson-Maduro, G Kourkoulis, I Male,[...]. Dev Cell 2015
456
10

Animal models of human disease: zebrafish swim into view.
Graham J Lieschke, Peter D Currie. Nat Rev Genet 2007
10

Prostaglandin E2 regulates vertebrate haematopoietic stem cell homeostasis.
Trista E North, Wolfram Goessling, Carl R Walkley, Claudia Lengerke, Kamden R Kopani, Allegra M Lord, Gerhard J Weber, Teresa V Bowman, Il-Ho Jang, Tilo Grosser,[...]. Nature 2007
773
10

High-content screening assay for identification of chemicals impacting spontaneous activity in zebrafish embryos.
Tara D Raftery, Gregory M Isales, Krystle L Yozzo, David C Volz. Environ Sci Technol 2014
44
20

The comparative neuroanatomy and neurochemistry of zebrafish CNS systems of relevance to human neuropsychiatric diseases.
P Panula, Y-C Chen, M Priyadarshini, H Kudo, S Semenova, M Sundvik, V Sallinen. Neurobiol Dis 2010
230
9

Chemobehavioural phenomics and behaviour-based psychiatric drug discovery in the zebrafish.
David Kokel, Randall T Peterson. Brief Funct Genomic Proteomic 2008
75
12

Locomotion in larval zebrafish: Influence of time of day, lighting and ethanol.
R C MacPhail, J Brooks, D L Hunter, B Padnos, T D Irons, S Padilla. Neurotoxicology 2009
227
9


Acute neuroactive drug exposures alter locomotor activity in larval zebrafish.
T D Irons, R C MacPhail, D L Hunter, S Padilla. Neurotoxicol Teratol 2010
161
9

Genetic compensation induced by deleterious mutations but not gene knockdowns.
Andrea Rossi, Zacharias Kontarakis, Claudia Gerri, Hendrik Nolte, Soraya Hölper, Marcus Krüger, Didier Y R Stainier. Nature 2015
647
9

Hypocretin/orexin overexpression induces an insomnia-like phenotype in zebrafish.
David A Prober, Jason Rihel, Anthony A Onah, Rou-Jia Sung, Alexander F Schier. J Neurosci 2006
269
9

Small molecule developmental screens reveal the logic and timing of vertebrate development.
R T Peterson, B A Link, J E Dowling, S L Schreiber. Proc Natl Acad Sci U S A 2000
377
9

Fish embryo toxicity test: identification of compounds with weak toxicity and analysis of behavioral effects to improve prediction of acute toxicity for neurotoxic compounds.
Nils Klüver, Maria König, Julia Ortmann, Riccardo Massei, Albrecht Paschke, Ralph Kühne, Stefan Scholz. Environ Sci Technol 2015
51
15

Measuring thigmotaxis in larval zebrafish.
S J Schnörr, P J Steenbergen, M K Richardson, D L Champagne. Behav Brain Res 2012
138
8

Comparability of behavioural assays using zebrafish larvae to assess neurotoxicity.
J Legradi, N el Abdellaoui, M van Pomeren, J Legler. Environ Sci Pollut Res Int 2015
37
21

Heritable targeted gene disruption in zebrafish using designed zinc-finger nucleases.
Yannick Doyon, Jasmine M McCammon, Jeffrey C Miller, Farhoud Faraji, Catherine Ngo, George E Katibah, Rainier Amora, Toby D Hocking, Lei Zhang, Edward J Rebar,[...]. Nat Biotechnol 2008
593
8

Drug screening in Scn1a zebrafish mutant identifies clemizole as a potential Dravet syndrome treatment.
Scott C Baraban, Matthew T Dinday, Gabriela A Hortopan. Nat Commun 2013
202
8

Whole-brain functional imaging at cellular resolution using light-sheet microscopy.
Misha B Ahrens, Michael B Orger, Drew N Robson, Jennifer M Li, Philipp J Keller. Nat Methods 2013
588
8

Sensorimotor gating in larval zebrafish.
Harold A Burgess, Michael Granato. J Neurosci 2007
263
8


Whole-brain activity mapping onto a zebrafish brain atlas.
Owen Randlett, Caroline L Wee, Eva A Naumann, Onyeka Nnaemeka, David Schoppik, James E Fitzgerald, Ruben Portugues, Alix M B Lacoste, Clemens Riegler, Florian Engert,[...]. Nat Methods 2015
177
8

Estrogens Suppress a Behavioral Phenotype in Zebrafish Mutants of the Autism Risk Gene, CNTNAP2.
Ellen J Hoffman, Katherine J Turner, Joseph M Fernandez, Daniel Cifuentes, Marcus Ghosh, Sundas Ijaz, Roshan A Jain, Fumi Kubo, Brent R Bill, Herwig Baier,[...]. Neuron 2016
77
10

A KNIME-Based Analysis of the Zebrafish Photomotor Response Clusters the Phenotypes of 14 Classes of Neuroactive Molecules.
Daniëlle Copmans, Thorsten Meinl, Christian Dietz, Matthijs van Leeuwen, Julia Ortmann, Michael R Berthold, Peter A M de Witte. J Biomol Screen 2016
13
61

Automated zebrafish chorion removal and single embryo placement: optimizing throughput of zebrafish developmental toxicity screens.
David Mandrell, Lisa Truong, Caleb Jephson, Mushfiqur R Sarker, Aaron Moore, Christopher Lang, Michael T Simonich, Robert L Tanguay. J Lab Autom 2012
102
7

Behavioral barcoding in the cloud: embracing data-intensive digital phenotyping in neuropharmacology.
David Kokel, Andrew J Rennekamp, Asmi H Shah, Urban Liebel, Randall T Peterson. Trends Biotechnol 2012
30
23

Chemical informatics and target identification in a zebrafish phenotypic screen.
Christian Laggner, David Kokel, Vincent Setola, Alexandra Tolia, Henry Lin, John J Irwin, Michael J Keiser, Chung Yan J Cheung, Daniel L Minor, Bryan L Roth,[...]. Nat Chem Biol 2011
85
8

A genetic screen for mutations affecting embryogenesis in zebrafish.
W Driever, L Solnica-Krezel, A F Schier, S C Neuhauss, J Malicki, D L Stemple, D Y Stainier, F Zwartkruis, S Abdelilah, Z Rangini,[...]. Development 1996
920
7


Novel chemical suppressors of long QT syndrome identified by an in vivo functional screen.
David S Peal, Robert W Mills, Stacey N Lynch, Janet M Mosley, Evi Lim, Patrick T Ellinor, Craig T January, Randall T Peterson, David J Milan. Circulation 2011
85
8

idTracker: tracking individuals in a group by automatic identification of unmarked animals.
Alfonso Pérez-Escudero, Julián Vicente-Page, Robert C Hinz, Sara Arganda, Gonzalo G de Polavieja. Nat Methods 2014
237
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.