A citation-based method for searching scientific literature

Yiping He, Jian Wu, Devin C Dressman, Christine Iacobuzio-Donahue, Sanford D Markowitz, Victor E Velculescu, Luis A Diaz, Kenneth W Kinzler, Bert Vogelstein, Nickolas Papadopoulos. Nature 2010
Times Cited: 369







List of co-cited articles
867 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Origins and functional consequences of somatic mitochondrial DNA mutations in human cancer.
Young Seok Ju, Ludmil B Alexandrov, Moritz Gerstung, Inigo Martincorena, Serena Nik-Zainal, Manasa Ramakrishna, Helen R Davies, Elli Papaemmanuil, Gunes Gundem, Adam Shlien,[...]. Elife 2014
211
27


Detecting heteroplasmy from high-throughput sequencing of complete human mitochondrial DNA genomes.
Mingkun Li, Anna Schönberg, Michael Schaefer, Roland Schroeder, Ivane Nasidze, Mark Stoneking. Am J Hum Genet 2010
199
22

Universal heteroplasmy of human mitochondrial DNA.
Brendan A I Payne, Ian J Wilson, Patrick Yu-Wai-Man, Jonathan Coxhead, David Deehan, Rita Horvath, Robert W Taylor, David C Samuels, Mauro Santibanez-Koref, Patrick F Chinnery. Hum Mol Genet 2013
234
21

Extensive tissue-related and allele-related mtDNA heteroplasmy suggests positive selection for somatic mutations.
Mingkun Li, Roland Schröder, Shengyu Ni, Burkhard Madea, Mark Stoneking. Proc Natl Acad Sci U S A 2015
106
19

Sequence and organization of the human mitochondrial genome.
S Anderson, A T Bankier, B G Barrell, M H de Bruijn, A R Coulson, J Drouin, I C Eperon, D P Nierlich, B A Roe, F Sanger,[...]. Nature 1981
17

Extensive pathogenicity of mitochondrial heteroplasmy in healthy human individuals.
Kaixiong Ye, Jian Lu, Fei Ma, Alon Keinan, Zhenglong Gu. Proc Natl Acad Sci U S A 2014
138
16

Mitochondrial DNA genetics and the heteroplasmy conundrum in evolution and disease.
Douglas C Wallace, Dimitra Chalkia. Cold Spring Harb Perspect Biol 2013
333
16

Spectrum of somatic mitochondrial mutations in five cancers.
Tatianna C Larman, Steven R DePalma, Angela G Hadjipanayis, Alexei Protopopov, Jianhua Zhang, Stacey B Gabriel, Lynda Chin, Christine E Seidman, Raju Kucherlapati, J G Seidman. Proc Natl Acad Sci U S A 2012
145
16

Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA.
R M Andrews, I Kubacka, P F Chinnery, R N Lightowlers, D M Turnbull, N Howell. Nat Genet 1999
14

ROS-generating mitochondrial DNA mutations can regulate tumor cell metastasis.
Kaori Ishikawa, Keizo Takenaga, Miho Akimoto, Nobuko Koshikawa, Aya Yamaguchi, Hirotake Imanishi, Kazuto Nakada, Yoshio Honma, Jun-Ichi Hayashi. Science 2008
899
12

Simultaneous DNA and RNA Mapping of Somatic Mitochondrial Mutations across Diverse Human Cancers.
James B Stewart, Babak Alaei-Mahabadi, Radhakrishnan Sabarinathan, Tore Samuelsson, Jan Gorodkin, Claes M Gustafsson, Erik Larsson. PLoS Genet 2015
64
18

Evidence for frequent and tissue-specific sequence heteroplasmy in human mitochondrial DNA.
Jana Naue, Steffen Hörer, Timo Sänger, Christina Strobl, Petra Hatzer-Grubwieser, Walther Parson, Sabine Lutz-Bonengel. Mitochondrion 2015
55
21


Mitochondrial DNA copy number variation across human cancers.
Ed Reznik, Martin L Miller, Yasin Şenbabaoğlu, Nadeem Riaz, Judy Sarungbam, Satish K Tickoo, Hikmat A Al-Ahmadie, William Lee, Venkatraman E Seshan, A Ari Hakimi,[...]. Elife 2016
224
11

Mitochondrial DNA mutations in human disease.
Robert W Taylor, Doug M Turnbull. Nat Rev Genet 2005
10

mtDNA mutations increase tumorigenicity in prostate cancer.
John A Petros, Amanda K Baumann, Eduardo Ruiz-Pesini, Mahul B Amin, Carrie Qi Sun, John Hall, SoDug Lim, Muta M Issa, W Dana Flanders, Seyed H Hosseini,[...]. Proc Natl Acad Sci U S A 2005
601
10

Rapid evolution of animal mitochondrial DNA.
W M Brown, M George, A C Wilson. Proc Natl Acad Sci U S A 1979
10

Human mitochondrial DNA: roles of inherited and somatic mutations.
Eric A Schon, Salvatore DiMauro, Michio Hirano. Nat Rev Genet 2012
420
10

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
10

Recurrent tissue-specific mtDNA mutations are common in humans.
David C Samuels, Chun Li, Bingshan Li, Zhuo Song, Eric Torstenson, Hayley Boyd Clay, Antonis Rokas, Tricia A Thornton-Wells, Jason H Moore, Tia M Hughes,[...]. PLoS Genet 2013
91
10

Heteroplasmy of mouse mtDNA is genetically unstable and results in altered behavior and cognition.
Mark S Sharpley, Christine Marciniak, Kristin Eckel-Mahan, Meagan McManus, Marco Crimi, Katrina Waymire, Chun Shi Lin, Satoru Masubuchi, Nicole Friend, Maya Koike,[...]. Cell 2012
222
10

Hallmarks of cancer: the next generation.
Douglas Hanahan, Robert A Weinberg. Cell 2011
9

High-throughput sequencing in mitochondrial DNA research.
Fei Ye, David C Samuels, Travis Clark, Yan Guo. Mitochondrion 2014
53
16

A mouse model of mitochondrial disease reveals germline selection against severe mtDNA mutations.
Weiwei Fan, Katrina G Waymire, Navneet Narula, Peng Li, Christophe Rocher, Pinar E Coskun, Mani A Vannan, Jagat Narula, Grant R Macgregor, Douglas C Wallace. Science 2008
304
9

Mitochondrial DNA mutations, oxidative stress, and apoptosis in mammalian aging.
G C Kujoth, A Hiona, T D Pugh, S Someya, K Panzer, S E Wohlgemuth, T Hofer, A Y Seo, R Sullivan, W A Jobling,[...]. Science 2005
9

Strong purifying selection in transmission of mammalian mitochondrial DNA.
James Bruce Stewart, Christoph Freyer, Joanna L Elson, Anna Wredenberg, Zekiye Cansu, Aleksandra Trifunovic, Nils-Göran Larsson. PLoS Biol 2008
327
9

Segregation of mitochondrial DNA heteroplasmy through a developmental genetic bottleneck in human embryos.
Vasileios I Floros, Angela Pyle, Sabine Dietmann, Wei Wei, Walfred C W Tang, Naoko Irie, Brendan Payne, Antonio Capalbo, Laila Noli, Jonathan Coxhead,[...]. Nat Cell Biol 2018
82
10

Variation in germline mtDNA heteroplasmy is determined prenatally but modified during subsequent transmission.
Christoph Freyer, Lynsey M Cree, Arnaud Mourier, James B Stewart, Camilla Koolmeister, Dusanka Milenkovic, Timothy Wai, Vasileios I Floros, Erik Hagström, Emmanouella E Chatzidaki,[...]. Nat Genet 2012
91
9

Biparental Inheritance of Mitochondrial DNA in Humans.
Shiyu Luo, C Alexander Valencia, Jinglan Zhang, Ni-Chung Lee, Jesse Slone, Baoheng Gui, Xinjian Wang, Zhuo Li, Sarah Dell, Jenice Brown,[...]. Proc Natl Acad Sci U S A 2018
145
9

Bottleneck and selection in the germline and maternal age influence transmission of mitochondrial DNA in human pedigrees.
Arslan A Zaidi, Peter R Wilton, Marcia Shu-Wei Su, Ian M Paul, Barbara Arbeithuber, Kate Anthony, Anton Nekrutenko, Rasmus Nielsen, Kateryna D Makova. Proc Natl Acad Sci U S A 2019
27
33

Mitochondria and cancer.
Douglas C Wallace. Nat Rev Cancer 2012
8

Facile detection of mitochondrial DNA mutations in tumors and bodily fluids.
M S Fliss, H Usadel, O L Caballero, L Wu, M R Buta, S M Eleff, J Jen, D Sidransky. Science 2000
634
8

Somatic mutations of the mitochondrial genome in human colorectal tumours.
K Polyak, Y Li, H Zhu, C Lengauer, J K Willson, S D Markowitz, M A Trush, K W Kinzler, B Vogelstein. Nat Genet 1998
659
8

Maternal age effect and severe germ-line bottleneck in the inheritance of human mitochondrial DNA.
Boris Rebolledo-Jaramillo, Marcia Shu-Wei Su, Nicholas Stoler, Jennifer A McElhoe, Benjamin Dickins, Daniel Blankenberg, Thorfinn S Korneliussen, Francesca Chiaromonte, Rasmus Nielsen, Mitchell M Holland,[...]. Proc Natl Acad Sci U S A 2014
118
8


Frequency and pattern of heteroplasmy in the complete human mitochondrial genome.
Amanda Ramos, Cristina Santos, Ligia Mateiu, Maria del Mar Gonzalez, Luis Alvarez, Luisa Azevedo, António Amorim, Maria Pilar Aluja. PLoS One 2013
51
15

Pronuclear transfer in human embryos to prevent transmission of mitochondrial DNA disease.
Lyndsey Craven, Helen A Tuppen, Gareth D Greggains, Stephen J Harbottle, Julie L Murphy, Lynsey M Cree, Alison P Murdoch, Patrick F Chinnery, Robert W Taylor, Robert N Lightowlers,[...]. Nature 2010
286
8

Detection of ultra-rare mutations by next-generation sequencing.
Michael W Schmitt, Scott R Kennedy, Jesse J Salk, Edward J Fox, Joseph B Hiatt, Lawrence A Loeb. Proc Natl Acad Sci U S A 2012
540
8

Premature ageing in mice expressing defective mitochondrial DNA polymerase.
Aleksandra Trifunovic, Anna Wredenberg, Maria Falkenberg, Johannes N Spelbrink, Anja T Rovio, Carl E Bruder, Mohammad Bohlooly-Y, Sebastian Gidlöf, Anders Oldfors, Rolf Wibom,[...]. Nature 2004
8

Germline mitochondrial DNA mutations aggravate ageing and can impair brain development.
Jaime M Ross, James B Stewart, Erik Hagström, Stefan Brené, Arnaud Mourier, Giuseppe Coppotelli, Christoph Freyer, Marie Lagouge, Barry J Hoffer, Lars Olson,[...]. Nature 2013
169
8

The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.
Aaron McKenna, Matthew Hanna, Eric Banks, Andrey Sivachenko, Kristian Cibulskis, Andrew Kernytsky, Kiran Garimella, David Altshuler, Stacey Gabriel, Mark Daly,[...]. Genome Res 2010
8

Heteroplasmic shifts in tumor mitochondrial genomes reveal tissue-specific signals of relaxed and positive selection.
Sneha Grandhi, Colleen Bosworth, Wesley Maddox, Cole Sensiba, Sara Akhavanfard, Ying Ni, Thomas LaFramboise. Hum Mol Genet 2017
26
30

Mitochondrial replacement in human oocytes carrying pathogenic mitochondrial DNA mutations.
Eunju Kang, Jun Wu, Nuria Marti Gutierrez, Amy Koski, Rebecca Tippner-Hedges, Karen Agaronyan, Aida Platero-Luengo, Paloma Martinez-Redondo, Hong Ma, Yeonmi Lee,[...]. Nature 2016
134
8

mtDNA-Server: next-generation sequencing data analysis of human mitochondrial DNA in the cloud.
Hansi Weissensteiner, Lukas Forer, Christian Fuchsberger, Bernd Schöpf, Anita Kloss-Brandstätter, Günther Specht, Florian Kronenberg, Sebastian Schönherr. Nucleic Acids Res 2016
71
11

Comprehensive molecular characterization of mitochondrial genomes in human cancers.
Yuan Yuan, Young Seok Ju, Youngwook Kim, Jun Li, Yumeng Wang, Christopher J Yoon, Yang Yang, Inigo Martincorena, Chad J Creighton, John N Weinstein,[...]. Nat Genet 2020
71
11


Molecular poltergeists: mitochondrial DNA copies (numts) in sequenced nuclear genomes.
Einat Hazkani-Covo, Raymond M Zeller, William Martin. PLoS Genet 2010
329
7

Mitochondrial and nuclear DNA matching shapes metabolism and healthy ageing.
Ana Latorre-Pellicer, Raquel Moreno-Loshuertos, Ana Victoria Lechuga-Vieco, Fátima Sánchez-Cabo, Carlos Torroja, Rebeca Acín-Pérez, Enrique Calvo, Esther Aix, Andrés González-Guerra, Angela Logan,[...]. Nature 2016
210
7

mtDNA Variation and Analysis Using Mitomap and Mitomaster.
Marie T Lott, Jeremy N Leipzig, Olga Derbeneva, H Michael Xie, Dimitra Chalkia, Mahdi Sarmady, Vincent Procaccio, Douglas C Wallace. Curr Protoc Bioinformatics 2013
238
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.