A citation-based method for searching scientific literature

Aaron D Goldberg, Laura A Banaszynski, Kyung-Min Noh, Peter W Lewis, Simon J Elsaesser, Sonja Stadler, Scott Dewell, Martin Law, Xingyi Guo, Xuan Li, Duancheng Wen, Ariane Chapgier, Russell C DeKelver, Jeffrey C Miller, Ya-Li Lee, Elizabeth A Boydston, Michael C Holmes, Philip D Gregory, John M Greally, Shahin Rafii, Chingwen Yang, Peter J Scambler, David Garrick, Richard J Gibbons, Douglas R Higgs, Ileana M Cristea, Fyodor D Urnov, Deyou Zheng, C David Allis. Cell 2010
Times Cited: 780







List of co-cited articles
1599 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Daxx is an H3.3-specific histone chaperone and cooperates with ATRX in replication-independent chromatin assembly at telomeres.
Peter W Lewis, Simon J Elsaesser, Kyung-Min Noh, Sonja C Stadler, C David Allis. Proc Natl Acad Sci U S A 2010
486
44

The death-associated protein DAXX is a novel histone chaperone involved in the replication-independent deposition of H3.3.
Pascal Drané, Khalid Ouararhni, Arnaud Depaux, Muhammad Shuaib, Ali Hamiche. Genes Dev 2010
418
42

Driver mutations in histone H3.3 and chromatin remodelling genes in paediatric glioblastoma.
Jeremy Schwartzentruber, Andrey Korshunov, Xiao-Yang Liu, David T W Jones, Elke Pfaff, Karine Jacob, Dominik Sturm, Adam M Fontebasso, Dong-Anh Khuong Quang, Martje Tönjes,[...]. Nature 2012
32

Histone H3.1 and H3.3 complexes mediate nucleosome assembly pathways dependent or independent of DNA synthesis.
Hideaki Tagami, Dominique Ray-Gallet, Geneviève Almouzni, Yoshihiro Nakatani. Cell 2004
894
30


Histone H3.3 is required for endogenous retroviral element silencing in embryonic stem cells.
Simon J Elsässer, Kyung-Min Noh, Nichole Diaz, C David Allis, Laura A Banaszynski. Nature 2015
180
24

Altered telomeres in tumors with ATRX and DAXX mutations.
Christopher M Heaphy, Roeland F de Wilde, Yuchen Jiao, Alison P Klein, Barish H Edil, Chanjuan Shi, Chetan Bettegowda, Fausto J Rodriguez, Charles G Eberhart, Sachidanand Hebbar,[...]. Science 2011
623
23

Inhibition of PRC2 activity by a gain-of-function H3 mutation found in pediatric glioblastoma.
Peter W Lewis, Manuel M Müller, Matthew S Koletsky, Francisco Cordero, Shu Lin, Laura A Banaszynski, Benjamin A Garcia, Tom W Muir, Oren J Becher, C David Allis. Science 2013
695
23

Dynamics of histone H3 deposition in vivo reveal a nucleosome gap-filling mechanism for H3.3 to maintain chromatin integrity.
Dominique Ray-Gallet, Adam Woolfe, Isabelle Vassias, Céline Pellentz, Nicolas Lacoste, Aastha Puri, David C Schultz, Nikolay A Pchelintsev, Peter D Adams, Lars E T Jansen,[...]. Mol Cell 2011
234
23

Crystal structure of the nucleosome core particle at 2.8 A resolution.
K Luger, A W Mäder, R K Richmond, D F Sargent, T J Richmond. Nature 1997
23

Hira-dependent histone H3.3 deposition facilitates PRC2 recruitment at developmental loci in ES cells.
Laura A Banaszynski, Duancheng Wen, Scott Dewell, Sarah J Whitcomb, Mingyan Lin, Nichole Diaz, Simon J Elsässer, Ariane Chapgier, Aaron D Goldberg, Eli Canaani,[...]. Cell 2013
156
22

Somatic histone H3 alterations in pediatric diffuse intrinsic pontine gliomas and non-brainstem glioblastomas.
Gang Wu, Alberto Broniscer, Troy A McEachron, Charles Lu, Barbara S Paugh, Jared Becksfort, Chunxu Qu, Li Ding, Robert Huether, Matthew Parker,[...]. Nat Genet 2012
912
21

Suppression of the alternative lengthening of telomere pathway by the chromatin remodelling factor ATRX.
David Clynes, Clare Jelinska, Barbara Xella, Helena Ayyub, Caroline Scott, Matthew Mitson, Stephen Taylor, Douglas R Higgs, Richard J Gibbons. Nat Commun 2015
128
20

ATRX interacts with H3.3 in maintaining telomere structural integrity in pluripotent embryonic stem cells.
Lee H Wong, James D McGhie, Marcus Sim, Melissa A Anderson, Soyeon Ahn, Ross D Hannan, Amee J George, Kylie A Morgan, Jeffrey R Mann, K H Andy Choo. Genome Res 2010
258
18

Histone H3.3 maintains genome integrity during mammalian development.
Chuan-Wei Jang, Yoichiro Shibata, Joshua Starmer, Della Yee, Terry Magnuson. Genes Dev 2015
80
21

HIRA is critical for a nucleosome assembly pathway independent of DNA synthesis.
Dominique Ray-Gallet, Jean-Pierre Quivy, Christine Scamps, Emmanuelle M-D Martini, Marc Lipinski, Geneviève Almouzni. Mol Cell 2002
291
17

Phosphorylation of histone H3.3 at serine 31 promotes p300 activity and enhancer acetylation.
Sara Martire, Aishwarya A Gogate, Amanda Whitmill, Amanuel Tafessu, Jennifer Nguyen, Yu-Ching Teng, Melodi Tastemel, Laura A Banaszynski. Nat Genet 2019
37
43

The expanding landscape of 'oncohistone' mutations in human cancers.
Benjamin A Nacev, Lijuan Feng, John D Bagert, Agata E Lemiesz, JianJiong Gao, Alexey A Soshnev, Ritika Kundra, Nikolaus Schultz, Tom W Muir, C David Allis. Nature 2019
104
16


HJURP is a cell-cycle-dependent maintenance and deposition factor of CENP-A at centromeres.
Elaine M Dunleavy, Danièle Roche, Hideaki Tagami, Nicolas Lacoste, Dominique Ray-Gallet, Yusuke Nakamura, Yataro Daigo, Yoshihiro Nakatani, Geneviève Almouzni-Pettinotti. Cell 2009
412
16

Loss of ATRX, genome instability, and an altered DNA damage response are hallmarks of the alternative lengthening of telomeres pathway.
Courtney A Lovejoy, Wendi Li, Steven Reisenweber, Supawat Thongthip, Joanne Bruno, Titia de Lange, Saurav De, John H J Petrini, Patricia A Sung, Maria Jasin,[...]. PLoS Genet 2012
342
15

Histone chaperone networks shaping chromatin function.
Colin M Hammond, Caroline B Strømme, Hongda Huang, Dinshaw J Patel, Anja Groth. Nat Rev Mol Cell Biol 2017
195
15

ATR-X syndrome protein targets tandem repeats and influences allele-specific expression in a size-dependent manner.
Martin J Law, Karen M Lower, Hsiao P J Voon, Jim R Hughes, David Garrick, Vip Viprakasit, Matthew Mitson, Marco De Gobbi, Marco Marra, Andrew Morris,[...]. Cell 2010
251
15

Nucleosome stability mediated by histone variants H3.3 and H2A.Z.
Chunyuan Jin, Gary Felsenfeld. Genes Dev 2007
359
15

The histone H3.3K27M mutation in pediatric glioma reprograms H3K27 methylation and gene expression.
Kui-Ming Chan, Dong Fang, Haiyun Gan, Rintaro Hashizume, Chuanhe Yu, Mark Schroeder, Nalin Gupta, Sabine Mueller, C David James, Robert Jenkins,[...]. Genes Dev 2013
393
14

H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions.
Chunyuan Jin, Chongzhi Zang, Gang Wei, Kairong Cui, Weiqun Peng, Keji Zhao, Gary Felsenfeld. Nat Genet 2009
527
14

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
14

The ATRX syndrome protein forms a chromatin-remodeling complex with Daxx and localizes in promyelocytic leukemia nuclear bodies.
Yutong Xue, Richard Gibbons, Zhijiang Yan, Dafeng Yang, Tarra L McDowell, Salvatore Sechi, Jun Qin, Sharleen Zhou, Doug Higgs, Weidong Wang. Proc Natl Acad Sci U S A 2003
257
13

H3.3K27M Cooperates with Trp53 Loss and PDGFRA Gain in Mouse Embryonic Neural Progenitor Cells to Induce Invasive High-Grade Gliomas.
Manav Pathania, Nicolas De Jay, Nicola Maestro, Ashot S Harutyunyan, Justyna Nitarska, Pirasteh Pahlavan, Stephen Henderson, Leonie G Mikael, Angela Richard-Londt, Ying Zhang,[...]. Cancer Cell 2017
90
14

DAXX envelops a histone H3.3-H4 dimer for H3.3-specific recognition.
Simon J Elsässer, Hongda Huang, Peter W Lewis, Jason W Chin, C David Allis, Dinshaw J Patel. Nature 2012
154
13


Atrx promotes heterochromatin formation at retrotransposons.
Dennis Sadic, Katharina Schmidt, Sophia Groh, Ivan Kondofersky, Joachim Ellwart, Christiane Fuchs, Fabian J Theis, Gunnar Schotta. EMBO Rep 2015
64
18

Integrated Molecular Meta-Analysis of 1,000 Pediatric High-Grade and Diffuse Intrinsic Pontine Glioma.
Alan Mackay, Anna Burford, Diana Carvalho, Elisa Izquierdo, Janat Fazal-Salom, Kathryn R Taylor, Lynn Bjerke, Matthew Clarke, Mara Vinci, Meera Nandhabalan,[...]. Cancer Cell 2017
303
12

Histone H3.3 K27M Accelerates Spontaneous Brainstem Glioma and Drives Restricted Changes in Bivalent Gene Expression.
Jon D Larson, Lawryn H Kasper, Barbara S Paugh, Hongjian Jin, Gang Wu, Chang-Hyuk Kwon, Yiping Fan, Timothy I Shaw, André B Silveira, Chunxu Qu,[...]. Cancer Cell 2019
80
15

Combinatorial readout of histone H3 modifications specifies localization of ATRX to heterochromatin.
Sebastian Eustermann, Ji-Chun Yang, Martin J Law, Rachel Amos, Lynda M Chapman, Clare Jelinska, David Garrick, David Clynes, Richard J Gibbons, Daniela Rhodes,[...]. Nat Struct Mol Biol 2011
148
12

Ubinuclein-1 confers histone H3.3-specific-binding by the HIRA histone chaperone complex.
M Daniel Ricketts, Brian Frederick, Henry Hoff, Yong Tang, David C Schultz, Taranjit Singh Rai, Maria Grazia Vizioli, Peter D Adams, Ronen Marmorstein. Nat Commun 2015
71
16


H3.3 actively marks enhancers and primes gene transcription via opening higher-ordered chromatin.
Ping Chen, Jicheng Zhao, Yan Wang, Min Wang, Haizhen Long, Dan Liang, Li Huang, Zengqi Wen, Wei Li, Xia Li,[...]. Genes Dev 2013
116
12

Enhancer regions show high histone H3.3 turnover that changes during differentiation.
Aimee M Deaton, Mariluz Gómez-Rodríguez, Jakub Mieczkowski, Michael Y Tolstorukov, Sharmistha Kundu, Ruslan I Sadreyev, Lars Et Jansen, Robert E Kingston. Elife 2016
45
26

ATRX ADD domain links an atypical histone methylation recognition mechanism to human mental-retardation syndrome.
Shigeki Iwase, Bin Xiang, Sharmistha Ghosh, Ting Ren, Peter W Lewis, Jesse C Cochrane, C David Allis, David J Picketts, Dinshaw J Patel, Haitao Li,[...]. Nat Struct Mol Biol 2011
170
12

ATRX Plays a Key Role in Maintaining Silencing at Interstitial Heterochromatic Loci and Imprinted Genes.
Hsiao P J Voon, Jim R Hughes, Christina Rode, Inti A De La Rosa-Velázquez, Thomas Jenuwein, Robert Feil, Douglas R Higgs, Richard J Gibbons. Cell Rep 2015
86
13

DAXX/ATRX, MEN1, and mTOR pathway genes are frequently altered in pancreatic neuroendocrine tumors.
Yuchen Jiao, Chanjuan Shi, Barish H Edil, Roeland F de Wilde, David S Klimstra, Anirban Maitra, Richard D Schulick, Laura H Tang, Christopher L Wolfgang, Michael A Choti,[...]. Science 2011
11

Histone variants on the move: substrates for chromatin dynamics.
Paul B Talbert, Steven Henikoff. Nat Rev Mol Cell Biol 2017
152
11

Mechanisms of action and regulation of ATP-dependent chromatin-remodelling complexes.
Cedric R Clapier, Janet Iwasa, Bradley R Cairns, Craig L Peterson. Nat Rev Mol Cell Biol 2017
318
11

Structural basis of oncogenic histone H3K27M inhibition of human polycomb repressive complex 2.
Neil Justin, Ying Zhang, Cataldo Tarricone, Stephen R Martin, Shuyang Chen, Elizabeth Underwood, Valeria De Marco, Lesley F Haire, Philip A Walker, Danny Reinberg,[...]. Nat Commun 2016
194
11

Reduced H3K27me3 and DNA hypomethylation are major drivers of gene expression in K27M mutant pediatric high-grade gliomas.
Sebastian Bender, Yujie Tang, Anders M Lindroth, Volker Hovestadt, David T W Jones, Marcel Kool, Marc Zapatka, Paul A Northcott, Dominik Sturm, Wei Wang,[...]. Cancer Cell 2013
387
11

The molecular hallmarks of epigenetic control.
C David Allis, Thomas Jenuwein. Nat Rev Genet 2016
878
11

Genome-scale profiling of histone H3.3 replacement patterns.
Yoshiko Mito, Jorja G Henikoff, Steven Henikoff. Nat Genet 2005
395
11

Hotspot mutations in H3F3A and IDH1 define distinct epigenetic and biological subgroups of glioblastoma.
Dominik Sturm, Hendrik Witt, Volker Hovestadt, Dong-Anh Khuong-Quang, David T W Jones, Carolin Konermann, Elke Pfaff, Martje Tönjes, Martin Sill, Sebastian Bender,[...]. Cancer Cell 2012
11

Histone supply: Multitiered regulation ensures chromatin dynamics throughout the cell cycle.
Shweta Mendiratta, Alberto Gatto, Genevieve Almouzni. J Cell Biol 2019
24
45


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.