A citation-based method for searching scientific literature

Fang Xie, Sarah E London, Bruce R Southey, Suresh P Annangudi, Andinet Amare, Sandra L Rodriguez-Zas, David F Clayton, Jonathan V Sweedler. BMC Biol 2010
Times Cited: 34







List of co-cited articles
268 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The genome of a songbird.
Wesley C Warren, David F Clayton, Hans Ellegren, Arthur P Arnold, Ladeana W Hillier, Axel Künstner, Steve Searle, Simon White, Albert J Vilella, Susan Fairley,[...]. Nature 2010
564
23

Birdsong "transcriptomics": neurochemical specializations of the oscine song system.
Peter V Lovell, David F Clayton, Kirstin L Replogle, Claudio V Mello. PLoS One 2008
72
17

A molecular neuroethological approach for identifying and characterizing a cascade of behaviorally regulated genes.
Kazuhiro Wada, Jason T Howard, Patrick McConnell, Osceola Whitney, Thierry Lints, Miriam V Rivas, Haruhito Horita, Michael A Patterson, Stephanie A White, Constance Scharff,[...]. Proc Natl Acad Sci U S A 2006
138
17

From the genome to the proteome: uncovering peptides in the Apis brain.
Amanda B Hummon, Timothy A Richmond, Peter Verleyen, Geert Baggerman, Jurgen Huybrechts, Michael A Ewing, Evy Vierstraete, Sandra L Rodriguez-Zas, Liliane Schoofs, Gene E Robinson,[...]. Science 2006
235
17

NeuroPred: a tool to predict cleavage sites in neuropeptide precursors and provide the masses of the resulting peptides.
Bruce R Southey, Andinet Amare, Tyler A Zimmerman, Sandra L Rodriguez-Zas, Jonathan V Sweedler. Nucleic Acids Res 2006
160
17


Genome-wide analyses reveal a role for peptide hormones in planarian germline development.
James J Collins, Xiaowen Hou, Elena V Romanova, Bramwell G Lambrus, Claire M Miller, Amir Saberi, Jonathan V Sweedler, Phillip A Newmark. PLoS Biol 2010
184
17

The Songbird Neurogenomics (SoNG) Initiative: community-based tools and strategies for study of brain gene function and evolution.
Kirstin Replogle, Arthur P Arnold, Gregory F Ball, Mark Band, Staffan Bensch, Eliot A Brenowitz, Shu Dong, Jenny Drnevich, Margaret Ferris, Julia M George,[...]. BMC Genomics 2008
103
14

Discrete molecular states in the brain accompany changing responses to a vocal signal.
Shu Dong, Kirstin L Replogle, Linda Hasadsri, Brian S Imai, Peter M Yau, Sandra Rodriguez-Zas, Bruce R Southey, Jonathan V Sweedler, David F Clayton. Proc Natl Acad Sci U S A 2009
64
14

Central control of song in the canary, Serinus canarius.
F Nottebohm, T M Stokes, C M Leonard. J Comp Neurol 1976
14

The biosynthesis of neuropeptides: peptide alpha-amidation.
B A Eipper, D A Stoffers, R E Mains. Annu Rev Neurosci 1992
523
14

Characterization of the prohormone complement in cattle using genomic libraries and cleavage prediction approaches.
Bruce R Southey, Sandra L Rodriguez-Zas, Jonathan V Sweedler. BMC Genomics 2009
20
25

Proteases for processing proneuropeptides into peptide neurotransmitters and hormones.
Vivian Hook, Lydiane Funkelstein, Douglas Lu, Steven Bark, Jill Wegrzyn, Shin-Rong Hwang. Annu Rev Pharmacol Toxicol 2008
171
14

Genomics, transcriptomics, and peptidomics of Daphnia pulex neuropeptides and protein hormones.
Heinrich Dircksen, Susanne Neupert, Reinhard Predel, Peter Verleyen, Jurgen Huybrechts, Johannes Strauss, Frank Hauser, Elisabeth Stafflinger, Martina Schneider, Kevin Pauwels,[...]. J Proteome Res 2011
137
14

Genomics and peptidomics of neuropeptides and protein hormones present in the parasitic wasp Nasonia vitripennis.
Frank Hauser, Susanne Neupert, Michael Williamson, Reinhard Predel, Yoshiaki Tanaka, Cornelis J P Grimmelikhuijzen. J Proteome Res 2010
123
14



Discovering new invertebrate neuropeptides using mass spectrometry.
Amanda B Hummon, Andinet Amare, Jonathan V Sweedler. Mass Spectrom Rev 2006
123
11

The neural basis of birdsong.
Fernando Nottebohm. PLoS Biol 2005
101
11


SwePep, a database designed for endogenous peptides and mass spectrometry.
Maria Fälth, Karl Sköld, Mathias Norrman, Marcus Svensson, David Fenyö, Per E Andren. Mol Cell Proteomics 2006
101
11


Endogenous peptide discovery of the rat circadian clock: a focused study of the suprachiasmatic nucleus by ultrahigh performance tandem mass spectrometry.
Ji Eun Lee, Norman Atkins, Nathan G Hatcher, Leonid Zamdborg, Martha U Gillette, Jonathan V Sweedler, Neil L Kelleher. Mol Cell Proteomics 2010
64
11

Peptidomics coming of age: a review of contributions from a bioinformatics angle.
Gerben Menschaert, Tom T M Vandekerckhove, Geert Baggerman, Liliane Schoofs, Walter Luyten, Wim Van Criekinge. J Proteome Res 2010
72
11

Peptidomics-based discovery of novel neuropeptides.
Marcus Svensson, Karl Sköld, Per Svenningsson, Per E Andren. J Proteome Res 2003
180
11

Sex differences in neuropeptide staining of song-control nuclei in zebra finch brains.
S W Bottjer, H Roselinsky, N B Tran. Brain Behav Evol 1997
39
11

Genome-wide census and expression profiling of chicken neuropeptide and prohormone convertase genes.
K R Delfino, B R Southey, J V Sweedler, S L Rodriguez-Zas. Neuropeptides 2010
13
30



Genomics, transcriptomics, and peptidomics of neuropeptides and protein hormones in the red flour beetle Tribolium castaneum.
Bin Li, Reinhard Predel, Susanne Neupert, Frank Hauser, Yoshiaki Tanaka, Giuseppe Cazzamali, Michael Williamson, Yasuyuki Arakane, Peter Verleyen, Liliane Schoofs,[...]. Genome Res 2008
276
11



The construction of a bioactive peptide database in Metazoa.
Feng Liu, Geert Baggerman, Liliane Schoofs, Geert Wets. J Proteome Res 2008
59
11


SignalP 4.0: discriminating signal peptides from transmembrane regions.
Thomas Nordahl Petersen, Søren Brunak, Gunnar von Heijne, Henrik Nielsen. Nat Methods 2011
11

Transgenic songbirds offer an opportunity to develop a genetic model for vocal learning.
R J Agate, B B Scott, B Haripal, C Lois, F Nottebohm. Proc Natl Acad Sci U S A 2009
69
8


Differential expression of glutamate receptors in avian neural pathways for learned vocalization.
Kazuhiro Wada, Hironobu Sakaguchi, Erich D Jarvis, Masatoshi Hagiwara. J Comp Neurol 2004
110
8

The recombination landscape of the zebra finch Taeniopygia guttata genome.
Niclas Backström, Wolfgang Forstmeier, Holger Schielzeth, Harriet Mellenius, Kiwoong Nam, Elisabeth Bolund, Matthew T Webster, Torbjörn Ost, Melanie Schneider, Bart Kempenaers,[...]. Genome Res 2010
161
8



Revised nomenclature for avian telencephalon and some related brainstem nuclei.
Anton Reiner, David J Perkel, Laura L Bruce, Ann B Butler, András Csillag, Wayne Kuenzel, Loreta Medina, George Paxinos, Toru Shimizu, Georg Striedter,[...]. J Comp Neurol 2004
795
8


Peptidomics: identification and quantification of endogenous peptides in neuroendocrine tissues.
Lloyd D Fricker, Jihyeon Lim, Hui Pan, Fa-Yun Che. Mass Spectrom Rev 2006
157
8

Heat stabilization of the tissue proteome: a new technology for improved proteomics.
Marcus Svensson, Mats Boren, Karl Sköld, Maria Fälth, Benita Sjögren, Malin Andersson, Per Svenningsson, Per E Andren. J Proteome Res 2009
111
8

Mass spectrometry-based discovery of circadian peptides.
Nathan G Hatcher, Norman Atkins, Suresh P Annangudi, Andrew J Forbes, Neil L Kelleher, Martha U Gillette, Jonathan V Sweedler. Proc Natl Acad Sci U S A 2008
77
8

New insights into copper monooxygenases and peptide amidation: structure, mechanism and function.
S T Prigge, R E Mains, B A Eipper, L M Amzel. Cell Mol Life Sci 2000
307
8

PEAKS DB: de novo sequencing assisted database search for sensitive and accurate peptide identification.
Jing Zhang, Lei Xin, Baozhen Shan, Weiwu Chen, Mingjie Xie, Denis Yuen, Weiming Zhang, Zefeng Zhang, Gilles A Lajoie, Bin Ma. Mol Cell Proteomics 2012
596
8

Developmental shifts in gene expression in the auditory forebrain during the sensitive period for song learning.
Sarah E London, Shu Dong, Kirstin Replogle, David F Clayton. Dev Neurobiol 2009
33
9

Molecular microcircuitry underlies functional specification in a basal ganglia circuit dedicated to vocal learning.
Austin T Hilliard, Julie E Miller, Elizabeth R Fraley, Steve Horvath, Stephanie A White. Neuron 2012
73
8


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.