A citation-based method for searching scientific literature

Benjamin F Grewe, Dominik Langer, Hansjörg Kasper, Björn M Kampa, Fritjof Helmchen. Nat Methods 2010
Times Cited: 267







List of co-cited articles
687 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Ultrasensitive fluorescent proteins for imaging neuronal activity.
Tsai-Wen Chen, Trevor J Wardill, Yi Sun, Stefan R Pulver, Sabine L Renninger, Amy Baohan, Eric R Schreiter, Rex A Kerr, Michael B Orger, Vivek Jayaraman,[...]. Nature 2013
48

Simultaneous Denoising, Deconvolution, and Demixing of Calcium Imaging Data.
Eftychios A Pnevmatikakis, Daniel Soudry, Yuanjun Gao, Timothy A Machado, Josh Merel, David Pfau, Thomas Reardon, Yu Mu, Clay Lacefield, Weijian Yang,[...]. Neuron 2016
298
30

Fast two-photon in vivo imaging with three-dimensional random-access scanning in large tissue volumes.
Gergely Katona, Gergely Szalay, Pál Maák, Attila Kaszás, Máté Veress, Dániel Hillier, Balázs Chiovini, E Sylvester Vizi, Botond Roska, Balázs Rózsa. Nat Methods 2012
193
26

In vivo two-photon calcium imaging of neuronal networks.
Christoph Stosiek, Olga Garaschuk, Knut Holthoff, Arthur Konnerth. Proc Natl Acad Sci U S A 2003
801
23

Three-dimensional random access multiphoton microscopy for functional imaging of neuronal activity.
Gaddum Duemani Reddy, Keith Kelleher, Rudy Fink, Peter Saggau. Nat Neurosci 2008
186
22

Benchmarking Spike Rate Inference in Population Calcium Imaging.
Lucas Theis, Philipp Berens, Emmanouil Froudarakis, Jacob Reimer, Miroslav Román Rosón, Tom Baden, Thomas Euler, Andreas S Tolias, Matthias Bethge. Neuron 2016
76
28

Whole-brain functional imaging at cellular resolution using light-sheet microscopy.
Misha B Ahrens, Michael B Orger, Drew N Robson, Jennifer M Li, Philipp J Keller. Nat Methods 2013
588
21

Spike inference from calcium imaging using sequential Monte Carlo methods.
Joshua T Vogelstein, Brendon O Watson, Adam M Packer, Rafael Yuste, Bruno Jedynak, Liam Paninski. Biophys J 2009
108
20

Fast nonnegative deconvolution for spike train inference from population calcium imaging.
Joshua T Vogelstein, Adam M Packer, Timothy A Machado, Tanya Sippy, Baktash Babadi, Rafael Yuste, Liam Paninski. J Neurophysiol 2010
202
19

Simultaneous all-optical manipulation and recording of neural circuit activity with cellular resolution in vivo.
Adam M Packer, Lloyd E Russell, Henry W P Dalgleish, Michael Häusser. Nat Methods 2015
246
17

Automated analysis of cellular signals from large-scale calcium imaging data.
Eran A Mukamel, Axel Nimmerjahn, Mark J Schnitzer. Neuron 2009
322
17

Two-photon laser scanning fluorescence microscopy.
W Denk, J H Strickler, W W Webb. Science 1990
17

Accurate spike estimation from noisy calcium signals for ultrafast three-dimensional imaging of large neuronal populations in vivo.
Thomas Deneux, Attila Kaszas, Gergely Szalay, Gergely Katona, Tamás Lakner, Amiram Grinvald, Balázs Rózsa, Ivo Vanzetta. Nat Commun 2016
64
25


Imaging calcium in neurons.
Christine Grienberger, Arthur Konnerth. Neuron 2012
554
15

Simultaneous whole-animal 3D imaging of neuronal activity using light-field microscopy.
Robert Prevedel, Young-Gyu Yoon, Maximilian Hoffmann, Nikita Pak, Gordon Wetzstein, Saul Kato, Tina Schrödel, Ramesh Raskar, Manuel Zimmer, Edward S Boyden,[...]. Nat Methods 2014
264
13

Simultaneous two-photon calcium imaging at different depths with spatiotemporal multiplexing.
Adrian Cheng, J Tiago Gonçalves, Peyman Golshani, Katsushi Arisaka, Carlos Portera-Cailliau. Nat Methods 2011
139
13

Fast two-layer two-photon imaging of neuronal cell populations using an electrically tunable lens.
Benjamin F Grewe, Fabian F Voigt, Marcel van 't Hoff, Fritjof Helmchen. Biomed Opt Express 2011
140
13

Deep tissue two-photon microscopy.
Fritjof Helmchen, Winfried Denk. Nat Methods 2005
13

Optimization of a GCaMP calcium indicator for neural activity imaging.
Jasper Akerboom, Tsai-Wen Chen, Trevor J Wardill, Lin Tian, Jonathan S Marvin, Sevinç Mutlu, Nicole Carreras Calderón, Federico Esposti, Bart G Borghuis, Xiaonan Richard Sun,[...]. J Neurosci 2012
698
13

In vivo three-photon microscopy of subcortical structures within an intact mouse brain.
Nicholas G Horton, Ke Wang, Demirhan Kobat, Catharine G Clark, Frank W Wise, Chris B Schaffer, Chris Xu. Nat Photonics 2013
482
13

Simultaneous Multi-plane Imaging of Neural Circuits.
Weijian Yang, Jae-Eun Kang Miller, Luis Carrillo-Reid, Eftychios Pnevmatikakis, Liam Paninski, Rafael Yuste, Darcy S Peterka. Neuron 2016
101
12

Sensitive red protein calcium indicators for imaging neural activity.
Hod Dana, Boaz Mohar, Yi Sun, Sujatha Narayan, Andrew Gordus, Jeremy P Hasseman, Getahun Tsegaye, Graham T Holt, Amy Hu, Deepika Walpita,[...]. Elife 2016
352
12

A large field of view two-photon mesoscope with subcellular resolution for in vivo imaging.
Nicholas James Sofroniew, Daniel Flickinger, Jonathan King, Karel Svoboda. Elife 2016
203
12


Aberration-free three-dimensional multiphoton imaging of neuronal activity at kHz rates.
Edward J Botcherby, Christopher W Smith, Michael M Kohl, Delphine Débarre, Martin J Booth, Rimas Juškaitis, Ole Paulsen, Tony Wilson. Proc Natl Acad Sci U S A 2012
91
12

SLM Microscopy: Scanless Two-Photon Imaging and Photostimulation with Spatial Light Modulators.
Volodymyr Nikolenko, Brendon O Watson, Roberto Araya, Alan Woodruff, Darcy S Peterka, Rafael Yuste. Front Neural Circuits 2008
183
11

Imaging neural activity in worms, flies and mice with improved GCaMP calcium indicators.
Lin Tian, S Andrew Hires, Tianyi Mao, Daniel Huber, M Eugenia Chiappe, Sreekanth H Chalasani, Leopoldo Petreanu, Jasper Akerboom, Sean A McKinney, Eric R Schreiter,[...]. Nat Methods 2009
11

Imaging large-scale neural activity with cellular resolution in awake, mobile mice.
Daniel A Dombeck, Anton N Khabbaz, Forrest Collman, Thomas L Adelman, David W Tank. Neuron 2007
601
11

Genetically encoded indicators of neuronal activity.
Michael Z Lin, Mark J Schnitzer. Nat Neurosci 2016
258
11

Photon shot noise limits on optical detection of neuronal spikes and estimation of spike timing.
Brian A Wilt, James E Fitzgerald, Mark J Schnitzer. Biophys J 2013
67
16

Brain-wide 3D imaging of neuronal activity in Caenorhabditis elegans with sculpted light.
Tina Schrödel, Robert Prevedel, Karin Aumayr, Manuel Zimmer, Alipasha Vaziri. Nat Methods 2013
141
10

Swept confocally-aligned planar excitation (SCAPE) microscopy for high speed volumetric imaging of behaving organisms.
Matthew B Bouchard, Venkatakaushik Voleti, César S Mendes, Clay Lacefield, Wesley B Grueber, Richard S Mann, Randy M Bruno, Elizabeth M C Hillman. Nat Photonics 2015
204
10

Continuous volumetric imaging via an optical phase-locked ultrasound lens.
Lingjie Kong, Jianyong Tang, Justin P Little, Yang Yu, Tim Lämmermann, Charles P Lin, Ronald N Germain, Meng Cui. Nat Methods 2015
71
14


Miniaturized integration of a fluorescence microscope.
Kunal K Ghosh, Laurie D Burns, Eric D Cocker, Axel Nimmerjahn, Yaniv Ziv, Abbas El Gamal, Mark J Schnitzer. Nat Methods 2011
432
10

Fast volumetric calcium imaging across multiple cortical layers using sculpted light.
Robert Prevedel, Aart J Verhoef, Alejandro J Pernía-Andrade, Siegfried Weisenburger, Ben S Huang, Tobias Nöbauer, Alma Fernández, Jeroen E Delcour, Peyman Golshani, Andrius Baltuska,[...]. Nat Methods 2016
63
15

Inference of neuronal network spike dynamics and topology from calcium imaging data.
Henry Lütcke, Felipe Gerhard, Friedemann Zenke, Wulfram Gerstner, Fritjof Helmchen. Front Neural Circuits 2013
44
22

Millisecond-timescale, genetically targeted optical control of neural activity.
Edward S Boyden, Feng Zhang, Ernst Bamberg, Georg Nagel, Karl Deisseroth. Nat Neurosci 2005
9

Simultaneous cellular-resolution optical perturbation and imaging of place cell firing fields.
John Peter Rickgauer, Karl Deisseroth, David W Tank. Nat Neurosci 2014
170
9

Random-access scanning microscopy for 3D imaging in awake behaving animals.
K M Naga Srinivas Nadella, Hana Roš, Chiara Baragli, Victoria A Griffiths, George Konstantinou, Theo Koimtzis, Geoffrey J Evans, Paul A Kirkby, R Angus Silver. Nat Methods 2016
45
20

Large-scale recording of neuronal ensembles.
György Buzsáki. Nat Neurosci 2004
839
9

Fast and accurate detection of action potentials from somatic calcium fluctuations.
Takuya Sasaki, Naoya Takahashi, Norio Matsuki, Yuji Ikegaya. J Neurophysiol 2008
85
10

Brain heating induced by near-infrared lasers during multiphoton microscopy.
Kaspar Podgorski, Gayathri Ranganathan. J Neurophysiol 2016
83
10

Wide field-of-view, multi-region, two-photon imaging of neuronal activity in the mammalian brain.
Jeffrey N Stirman, Ikuko T Smith, Michael W Kudenov, Spencer L Smith. Nat Biotechnol 2016
116
9

Functional mapping of single spines in cortical neurons in vivo.
Xiaowei Chen, Ulrich Leischner, Nathalie L Rochefort, Israel Nelken, Arthur Konnerth. Nature 2011
236
9

Robustness of Spike Deconvolution for Neuronal Calcium Imaging.
Marius Pachitariu, Carsen Stringer, Kenneth D Harris. J Neurosci 2018
40
22

Three-dimensional mapping of microcircuit correlation structure.
R James Cotton, Emmanouil Froudarakis, Patrick Storer, Peter Saggau, Andreas S Tolias. Front Neural Circuits 2013
38
21

Encoded multisite two-photon microscopy.
Mathieu Ducros, Yannick Goulam Houssen, Jonathan Bradley, Vincent de Sars, Serge Charpak. Proc Natl Acad Sci U S A 2013
36
22

Three-dimensional imaging and photostimulation by remote-focusing and holographic light patterning.
Francesca Anselmi, Cathie Ventalon, Aurélien Bègue, David Ogden, Valentina Emiliani. Proc Natl Acad Sci U S A 2011
73
10


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.