A citation-based method for searching scientific literature

Alan R Aronson, François-Michel Lang. J Am Med Inform Assoc 2010
Times Cited: 555







List of co-cited articles
351 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications.
Guergana K Savova, James J Masanz, Philip V Ogren, Jiaping Zheng, Sunghwan Sohn, Karin C Kipper-Schuler, Christopher G Chute. J Am Med Inform Assoc 2010
773
42


MIMIC-III, a freely accessible critical care database.
Alistair E W Johnson, Tom J Pollard, Lu Shen, Li-Wei H Lehman, Mengling Feng, Mohammad Ghassemi, Benjamin Moody, Peter Szolovits, Leo Anthony Celi, Roger G Mark. Sci Data 2016
20

Clinical information extraction applications: A literature review.
Yanshan Wang, Liwei Wang, Majid Rastegar-Mojarad, Sungrim Moon, Feichen Shen, Naveed Afzal, Sijia Liu, Yuqun Zeng, Saeed Mehrabi, Sunghwan Sohn,[...]. J Biomed Inform 2018
200
20

BioBERT: a pre-trained biomedical language representation model for biomedical text mining.
Jinhyuk Lee, Wonjin Yoon, Sungdong Kim, Donghyeon Kim, Sunkyu Kim, Chan Ho So, Jaewoo Kang. Bioinformatics 2020
474
18

CLAMP - a toolkit for efficiently building customized clinical natural language processing pipelines.
Ergin Soysal, Jingqi Wang, Min Jiang, Yonghui Wu, Serguei Pakhomov, Hongfang Liu, Hua Xu. J Am Med Inform Assoc 2018
118
14

2010 i2b2/VA challenge on concepts, assertions, and relations in clinical text.
Özlem Uzuner, Brett R South, Shuying Shen, Scott L DuVall. J Am Med Inform Assoc 2011
379
13


MetaMap Lite: an evaluation of a new Java implementation of MetaMap.
Dina Demner-Fushman, Willie J Rogers, Alan R Aronson. J Am Med Inform Assoc 2017
58
18

A general natural-language text processor for clinical radiology.
C Friedman, P O Alderson, J H Austin, J J Cimino, S B Johnson. J Am Med Inform Assoc 1994
397
10

Long short-term memory.
S Hochreiter, J Schmidhuber. Neural Comput 1997
9

Extracting information from textual documents in the electronic health record: a review of recent research.
S M Meystre, G K Savova, K C Kipper-Schuler, J F Hurdle. Yearb Med Inform 2008
344
9

NCBI disease corpus: a resource for disease name recognition and concept normalization.
Rezarta Islamaj Doğan, Robert Leaman, Zhiyong Lu. J Biomed Inform 2014
135
9


A simple algorithm for identifying negated findings and diseases in discharge summaries.
W W Chapman, W Bridewell, P Hanbury, G F Cooper, B G Buchanan. J Biomed Inform 2001
442
8

The KnowledgeMap project: development of a concept-based medical school curriculum database.
Joshua C Denny, Plomarz R Irani, Firas H Wehbe, Jeffrey D Smithers, Anderson Spickard. AMIA Annu Symp Proc 2003
48
14

Comparison of MetaMap and cTAKES for entity extraction in clinical notes.
Ruth Reátegui, Sylvie Ratté. BMC Med Inform Decis Mak 2018
21
33

Natural language processing of symptoms documented in free-text narratives of electronic health records: a systematic review.
Theresa A Koleck, Caitlin Dreisbach, Philip E Bourne, Suzanne Bakken. J Am Med Inform Assoc 2019
99
7

DNorm: disease name normalization with pairwise learning to rank.
Robert Leaman, Rezarta Islamaj Dogan, Zhiyong Lu. Bioinformatics 2013
184
7

Extracting medication information from clinical text.
Ozlem Uzuner, Imre Solti, Eithon Cadag. J Am Med Inform Assoc 2010
215
6

An information extraction framework for cohort identification using electronic health records.
Hongfang Liu, Suzette J Bielinski, Sunghwan Sohn, Sean Murphy, Kavishwar B Wagholikar, Siddhartha R Jonnalagadda, K E Ravikumar, Stephen T Wu, Iftikhar J Kullo, Christopher G Chute. AMIA Jt Summits Transl Sci Proc 2013
85
7

Aggregating UMLS semantic types for reducing conceptual complexity.
A T McCray, A Burgun, O Bodenreider. Stud Health Technol Inform 2001
125
6

Clinical concept extraction: A methodology review.
Sunyang Fu, David Chen, Huan He, Sijia Liu, Sungrim Moon, Kevin J Peterson, Feichen Shen, Liwei Wang, Yanshan Wang, Andrew Wen,[...]. J Biomed Inform 2020
24
25

BioCreative V CDR task corpus: a resource for chemical disease relation extraction.
Jiao Li, Yueping Sun, Robin J Johnson, Daniela Sciaky, Chih-Hsuan Wei, Robert Leaman, Allan Peter Davis, Carolyn J Mattingly, Thomas C Wiegers, Zhiyong Lu. Database (Oxford) 2016
83
7

BioWordVec, improving biomedical word embeddings with subword information and MeSH.
Yijia Zhang, Qingyu Chen, Zhihao Yang, Hongfei Lin, Zhiyong Lu. Sci Data 2019
73
8

Extracting information from the text of electronic medical records to improve case detection: a systematic review.
Elizabeth Ford, John A Carroll, Helen E Smith, Donia Scott, Jackie A Cassell. J Am Med Inform Assoc 2016
139
5

SemMedDB: a PubMed-scale repository of biomedical semantic predications.
Halil Kilicoglu, Dongwook Shin, Marcelo Fiszman, Graciela Rosemblat, Thomas C Rindflesch. Bioinformatics 2012
116
5


CNN-based ranking for biomedical entity normalization.
Haodi Li, Qingcai Chen, Buzhou Tang, Xiaolong Wang, Hua Xu, Baohua Wang, Dong Huang. BMC Bioinformatics 2017
26
19


Extracting principal diagnosis, co-morbidity and smoking status for asthma research: evaluation of a natural language processing system.
Qing T Zeng, Sergey Goryachev, Scott Weiss, Margarita Sordo, Shawn N Murphy, Ross Lazarus. BMC Med Inform Decis Mak 2006
214
4

Machine-learned solutions for three stages of clinical information extraction: the state of the art at i2b2 2010.
Berry de Bruijn, Colin Cherry, Svetlana Kiritchenko, Joel Martin, Xiaodan Zhu. J Am Med Inform Assoc 2011
94
4

Evaluating temporal relations in clinical text: 2012 i2b2 Challenge.
Weiyi Sun, Anna Rumshisky, Ozlem Uzuner. J Am Med Inform Assoc 2013
143
4

Recognizing obesity and comorbidities in sparse data.
Ozlem Uzuner. J Am Med Inform Assoc 2009
133
4

Deep learning.
Yann LeCun, Yoshua Bengio, Geoffrey Hinton. Nature 2015
4

Entity recognition from clinical texts via recurrent neural network.
Zengjian Liu, Ming Yang, Xiaolong Wang, Qingcai Chen, Buzhou Tang, Zhe Wang, Hua Xu. BMC Med Inform Decis Mak 2017
55
7

Natural language processing systems for capturing and standardizing unstructured clinical information: A systematic review.
Kory Kreimeyer, Matthew Foster, Abhishek Pandey, Nina Arya, Gwendolyn Halford, Sandra F Jones, Richard Forshee, Mark Walderhaug, Taxiarchis Botsis. J Biomed Inform 2017
161
4


Mining electronic health records: towards better research applications and clinical care.
Peter B Jensen, Lars J Jensen, Søren Brunak. Nat Rev Genet 2012
586
4

Semantic annotation in biomedicine: the current landscape.
Jelena Jovanović, Ebrahim Bagheri. J Biomed Semantics 2017
22
18

BioInfer: a corpus for information extraction in the biomedical domain.
Sampo Pyysalo, Filip Ginter, Juho Heimonen, Jari Björne, Jorma Boberg, Jouni Järvinen, Tapio Salakoski. BMC Bioinformatics 2007
137
4

What can natural language processing do for clinical decision support?
Dina Demner-Fushman, Wendy W Chapman, Clement J McDonald. J Biomed Inform 2009
233
4

Literature Based Discovery: Models, methods, and trends.
Sam Henry, Bridget T McInnes. J Biomed Inform 2017
23
17

SNOMED-CT: The advanced terminology and coding system for eHealth.
Kevin Donnelly. Stud Health Technol Inform 2006
162
4

A review of approaches to identifying patient phenotype cohorts using electronic health records.
Chaitanya Shivade, Preethi Raghavan, Eric Fosler-Lussier, Peter J Embi, Noemie Elhadad, Stephen B Johnson, Albert M Lai. J Am Med Inform Assoc 2014
227
4

2018 n2c2 shared task on adverse drug events and medication extraction in electronic health records.
Sam Henry, Kevin Buchan, Michele Filannino, Amber Stubbs, Ozlem Uzuner. J Am Med Inform Assoc 2020
35
11

BERT-based Ranking for Biomedical Entity Normalization.
Zongcheng Ji, Qiang Wei, Hua Xu. AMIA Jt Summits Transl Sci Proc 2020
15
26

Deep phenotyping for precision medicine.
Peter N Robinson. Hum Mutat 2012
203
4

Text summarization in the biomedical domain: a systematic review of recent research.
Rashmi Mishra, Jiantao Bian, Marcelo Fiszman, Charlene R Weir, Siddhartha Jonnalagadda, Javed Mostafa, Guilherme Del Fiol. J Biomed Inform 2014
56
7

SECNLP: A survey of embeddings in clinical natural language processing.
Katikapalli Subramanyam Kalyan, S Sangeetha. J Biomed Inform 2020
10
40


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.