Alan R Aronson, François-Michel Lang. J Am Med Inform Assoc 2010
Times Cited: 555
Times Cited: 555
Times Cited
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Similarity
Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications.
Guergana K Savova, James J Masanz, Philip V Ogren, Jiaping Zheng, Sunghwan Sohn, Karin C Kipper-Schuler, Christopher G Chute. J Am Med Inform Assoc 2010
Guergana K Savova, James J Masanz, Philip V Ogren, Jiaping Zheng, Sunghwan Sohn, Karin C Kipper-Schuler, Christopher G Chute. J Am Med Inform Assoc 2010
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The Unified Medical Language System (UMLS): integrating biomedical terminology.
Olivier Bodenreider. Nucleic Acids Res 2004
Olivier Bodenreider. Nucleic Acids Res 2004
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MIMIC-III, a freely accessible critical care database.
Alistair E W Johnson, Tom J Pollard, Lu Shen, Li-Wei H Lehman, Mengling Feng, Mohammad Ghassemi, Benjamin Moody, Peter Szolovits, Leo Anthony Celi, Roger G Mark. Sci Data 2016
Alistair E W Johnson, Tom J Pollard, Lu Shen, Li-Wei H Lehman, Mengling Feng, Mohammad Ghassemi, Benjamin Moody, Peter Szolovits, Leo Anthony Celi, Roger G Mark. Sci Data 2016
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Clinical information extraction applications: A literature review.
Yanshan Wang, Liwei Wang, Majid Rastegar-Mojarad, Sungrim Moon, Feichen Shen, Naveed Afzal, Sijia Liu, Yuqun Zeng, Saeed Mehrabi, Sunghwan Sohn,[...]. J Biomed Inform 2018
Yanshan Wang, Liwei Wang, Majid Rastegar-Mojarad, Sungrim Moon, Feichen Shen, Naveed Afzal, Sijia Liu, Yuqun Zeng, Saeed Mehrabi, Sunghwan Sohn,[...]. J Biomed Inform 2018
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BioBERT: a pre-trained biomedical language representation model for biomedical text mining.
Jinhyuk Lee, Wonjin Yoon, Sungdong Kim, Donghyeon Kim, Sunkyu Kim, Chan Ho So, Jaewoo Kang. Bioinformatics 2020
Jinhyuk Lee, Wonjin Yoon, Sungdong Kim, Donghyeon Kim, Sunkyu Kim, Chan Ho So, Jaewoo Kang. Bioinformatics 2020
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CLAMP - a toolkit for efficiently building customized clinical natural language processing pipelines.
Ergin Soysal, Jingqi Wang, Min Jiang, Yonghui Wu, Serguei Pakhomov, Hongfang Liu, Hua Xu. J Am Med Inform Assoc 2018
Ergin Soysal, Jingqi Wang, Min Jiang, Yonghui Wu, Serguei Pakhomov, Hongfang Liu, Hua Xu. J Am Med Inform Assoc 2018
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2010 i2b2/VA challenge on concepts, assertions, and relations in clinical text.
Özlem Uzuner, Brett R South, Shuying Shen, Scott L DuVall. J Am Med Inform Assoc 2011
Özlem Uzuner, Brett R South, Shuying Shen, Scott L DuVall. J Am Med Inform Assoc 2011
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Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program.
A R Aronson. Proc AMIA Symp 2001
A R Aronson. Proc AMIA Symp 2001
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MetaMap Lite: an evaluation of a new Java implementation of MetaMap.
Dina Demner-Fushman, Willie J Rogers, Alan R Aronson. J Am Med Inform Assoc 2017
Dina Demner-Fushman, Willie J Rogers, Alan R Aronson. J Am Med Inform Assoc 2017
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A general natural-language text processor for clinical radiology.
C Friedman, P O Alderson, J H Austin, J J Cimino, S B Johnson. J Am Med Inform Assoc 1994
C Friedman, P O Alderson, J H Austin, J J Cimino, S B Johnson. J Am Med Inform Assoc 1994
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Extracting information from textual documents in the electronic health record: a review of recent research.
S M Meystre, G K Savova, K C Kipper-Schuler, J F Hurdle. Yearb Med Inform 2008
S M Meystre, G K Savova, K C Kipper-Schuler, J F Hurdle. Yearb Med Inform 2008
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NCBI disease corpus: a resource for disease name recognition and concept normalization.
Rezarta Islamaj Doğan, Robert Leaman, Zhiyong Lu. J Biomed Inform 2014
Rezarta Islamaj Doğan, Robert Leaman, Zhiyong Lu. J Biomed Inform 2014
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The interaction of domain knowledge and linguistic structure in natural language processing: interpreting hypernymic propositions in biomedical text.
Thomas C Rindflesch, Marcelo Fiszman. J Biomed Inform 2003
Thomas C Rindflesch, Marcelo Fiszman. J Biomed Inform 2003
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A simple algorithm for identifying negated findings and diseases in discharge summaries.
W W Chapman, W Bridewell, P Hanbury, G F Cooper, B G Buchanan. J Biomed Inform 2001
W W Chapman, W Bridewell, P Hanbury, G F Cooper, B G Buchanan. J Biomed Inform 2001
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The KnowledgeMap project: development of a concept-based medical school curriculum database.
Joshua C Denny, Plomarz R Irani, Firas H Wehbe, Jeffrey D Smithers, Anderson Spickard. AMIA Annu Symp Proc 2003
Joshua C Denny, Plomarz R Irani, Firas H Wehbe, Jeffrey D Smithers, Anderson Spickard. AMIA Annu Symp Proc 2003
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Comparison of MetaMap and cTAKES for entity extraction in clinical notes.
Ruth Reátegui, Sylvie Ratté. BMC Med Inform Decis Mak 2018
Ruth Reátegui, Sylvie Ratté. BMC Med Inform Decis Mak 2018
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Natural language processing of symptoms documented in free-text narratives of electronic health records: a systematic review.
Theresa A Koleck, Caitlin Dreisbach, Philip E Bourne, Suzanne Bakken. J Am Med Inform Assoc 2019
Theresa A Koleck, Caitlin Dreisbach, Philip E Bourne, Suzanne Bakken. J Am Med Inform Assoc 2019
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DNorm: disease name normalization with pairwise learning to rank.
Robert Leaman, Rezarta Islamaj Dogan, Zhiyong Lu. Bioinformatics 2013
Robert Leaman, Rezarta Islamaj Dogan, Zhiyong Lu. Bioinformatics 2013
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Extracting medication information from clinical text.
Ozlem Uzuner, Imre Solti, Eithon Cadag. J Am Med Inform Assoc 2010
Ozlem Uzuner, Imre Solti, Eithon Cadag. J Am Med Inform Assoc 2010
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An information extraction framework for cohort identification using electronic health records.
Hongfang Liu, Suzette J Bielinski, Sunghwan Sohn, Sean Murphy, Kavishwar B Wagholikar, Siddhartha R Jonnalagadda, K E Ravikumar, Stephen T Wu, Iftikhar J Kullo, Christopher G Chute. AMIA Jt Summits Transl Sci Proc 2013
Hongfang Liu, Suzette J Bielinski, Sunghwan Sohn, Sean Murphy, Kavishwar B Wagholikar, Siddhartha R Jonnalagadda, K E Ravikumar, Stephen T Wu, Iftikhar J Kullo, Christopher G Chute. AMIA Jt Summits Transl Sci Proc 2013
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Aggregating UMLS semantic types for reducing conceptual complexity.
A T McCray, A Burgun, O Bodenreider. Stud Health Technol Inform 2001
A T McCray, A Burgun, O Bodenreider. Stud Health Technol Inform 2001
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Clinical concept extraction: A methodology review.
Sunyang Fu, David Chen, Huan He, Sijia Liu, Sungrim Moon, Kevin J Peterson, Feichen Shen, Liwei Wang, Yanshan Wang, Andrew Wen,[...]. J Biomed Inform 2020
Sunyang Fu, David Chen, Huan He, Sijia Liu, Sungrim Moon, Kevin J Peterson, Feichen Shen, Liwei Wang, Yanshan Wang, Andrew Wen,[...]. J Biomed Inform 2020
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BioCreative V CDR task corpus: a resource for chemical disease relation extraction.
Jiao Li, Yueping Sun, Robin J Johnson, Daniela Sciaky, Chih-Hsuan Wei, Robert Leaman, Allan Peter Davis, Carolyn J Mattingly, Thomas C Wiegers, Zhiyong Lu. Database (Oxford) 2016
Jiao Li, Yueping Sun, Robin J Johnson, Daniela Sciaky, Chih-Hsuan Wei, Robert Leaman, Allan Peter Davis, Carolyn J Mattingly, Thomas C Wiegers, Zhiyong Lu. Database (Oxford) 2016
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BioWordVec, improving biomedical word embeddings with subword information and MeSH.
Yijia Zhang, Qingyu Chen, Zhihao Yang, Hongfei Lin, Zhiyong Lu. Sci Data 2019
Yijia Zhang, Qingyu Chen, Zhihao Yang, Hongfei Lin, Zhiyong Lu. Sci Data 2019
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Extracting information from the text of electronic medical records to improve case detection: a systematic review.
Elizabeth Ford, John A Carroll, Helen E Smith, Donia Scott, Jackie A Cassell. J Am Med Inform Assoc 2016
Elizabeth Ford, John A Carroll, Helen E Smith, Donia Scott, Jackie A Cassell. J Am Med Inform Assoc 2016
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SemMedDB: a PubMed-scale repository of biomedical semantic predications.
Halil Kilicoglu, Dongwook Shin, Marcelo Fiszman, Graciela Rosemblat, Thomas C Rindflesch. Bioinformatics 2012
Halil Kilicoglu, Dongwook Shin, Marcelo Fiszman, Graciela Rosemblat, Thomas C Rindflesch. Bioinformatics 2012
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Deep Patient: An Unsupervised Representation to Predict the Future of Patients from the Electronic Health Records.
Riccardo Miotto, Li Li, Brian A Kidd, Joel T Dudley. Sci Rep 2016
Riccardo Miotto, Li Li, Brian A Kidd, Joel T Dudley. Sci Rep 2016
5
CNN-based ranking for biomedical entity normalization.
Haodi Li, Qingcai Chen, Buzhou Tang, Xiaolong Wang, Hua Xu, Baohua Wang, Dong Huang. BMC Bioinformatics 2017
Haodi Li, Qingcai Chen, Buzhou Tang, Xiaolong Wang, Hua Xu, Baohua Wang, Dong Huang. BMC Bioinformatics 2017
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High accuracy information extraction of medication information from clinical notes: 2009 i2b2 medication extraction challenge.
Jon Patrick, Min Li. J Am Med Inform Assoc 2010
Jon Patrick, Min Li. J Am Med Inform Assoc 2010
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Extracting principal diagnosis, co-morbidity and smoking status for asthma research: evaluation of a natural language processing system.
Qing T Zeng, Sergey Goryachev, Scott Weiss, Margarita Sordo, Shawn N Murphy, Ross Lazarus. BMC Med Inform Decis Mak 2006
Qing T Zeng, Sergey Goryachev, Scott Weiss, Margarita Sordo, Shawn N Murphy, Ross Lazarus. BMC Med Inform Decis Mak 2006
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Machine-learned solutions for three stages of clinical information extraction: the state of the art at i2b2 2010.
Berry de Bruijn, Colin Cherry, Svetlana Kiritchenko, Joel Martin, Xiaodan Zhu. J Am Med Inform Assoc 2011
Berry de Bruijn, Colin Cherry, Svetlana Kiritchenko, Joel Martin, Xiaodan Zhu. J Am Med Inform Assoc 2011
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Evaluating temporal relations in clinical text: 2012 i2b2 Challenge.
Weiyi Sun, Anna Rumshisky, Ozlem Uzuner. J Am Med Inform Assoc 2013
Weiyi Sun, Anna Rumshisky, Ozlem Uzuner. J Am Med Inform Assoc 2013
4
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Entity recognition from clinical texts via recurrent neural network.
Zengjian Liu, Ming Yang, Xiaolong Wang, Qingcai Chen, Buzhou Tang, Zhe Wang, Hua Xu. BMC Med Inform Decis Mak 2017
Zengjian Liu, Ming Yang, Xiaolong Wang, Qingcai Chen, Buzhou Tang, Zhe Wang, Hua Xu. BMC Med Inform Decis Mak 2017
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Natural language processing systems for capturing and standardizing unstructured clinical information: A systematic review.
Kory Kreimeyer, Matthew Foster, Abhishek Pandey, Nina Arya, Gwendolyn Halford, Sandra F Jones, Richard Forshee, Mark Walderhaug, Taxiarchis Botsis. J Biomed Inform 2017
Kory Kreimeyer, Matthew Foster, Abhishek Pandey, Nina Arya, Gwendolyn Halford, Sandra F Jones, Richard Forshee, Mark Walderhaug, Taxiarchis Botsis. J Biomed Inform 2017
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Challenges in clinical natural language processing for automated disorder normalization.
Robert Leaman, Ritu Khare, Zhiyong Lu. J Biomed Inform 2015
Robert Leaman, Ritu Khare, Zhiyong Lu. J Biomed Inform 2015
8
Mining electronic health records: towards better research applications and clinical care.
Peter B Jensen, Lars J Jensen, Søren Brunak. Nat Rev Genet 2012
Peter B Jensen, Lars J Jensen, Søren Brunak. Nat Rev Genet 2012
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Semantic annotation in biomedicine: the current landscape.
Jelena Jovanović, Ebrahim Bagheri. J Biomed Semantics 2017
Jelena Jovanović, Ebrahim Bagheri. J Biomed Semantics 2017
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BioInfer: a corpus for information extraction in the biomedical domain.
Sampo Pyysalo, Filip Ginter, Juho Heimonen, Jari Björne, Jorma Boberg, Jouni Järvinen, Tapio Salakoski. BMC Bioinformatics 2007
Sampo Pyysalo, Filip Ginter, Juho Heimonen, Jari Björne, Jorma Boberg, Jouni Järvinen, Tapio Salakoski. BMC Bioinformatics 2007
4
What can natural language processing do for clinical decision support?
Dina Demner-Fushman, Wendy W Chapman, Clement J McDonald. J Biomed Inform 2009
Dina Demner-Fushman, Wendy W Chapman, Clement J McDonald. J Biomed Inform 2009
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Literature Based Discovery: Models, methods, and trends.
Sam Henry, Bridget T McInnes. J Biomed Inform 2017
Sam Henry, Bridget T McInnes. J Biomed Inform 2017
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SNOMED-CT: The advanced terminology and coding system for eHealth.
Kevin Donnelly. Stud Health Technol Inform 2006
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A review of approaches to identifying patient phenotype cohorts using electronic health records.
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2018 n2c2 shared task on adverse drug events and medication extraction in electronic health records.
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BERT-based Ranking for Biomedical Entity Normalization.
Zongcheng Ji, Qiang Wei, Hua Xu. AMIA Jt Summits Transl Sci Proc 2020
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Text summarization in the biomedical domain: a systematic review of recent research.
Rashmi Mishra, Jiantao Bian, Marcelo Fiszman, Charlene R Weir, Siddhartha Jonnalagadda, Javed Mostafa, Guilherme Del Fiol. J Biomed Inform 2014
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SECNLP: A survey of embeddings in clinical natural language processing.
Katikapalli Subramanyam Kalyan, S Sangeetha. J Biomed Inform 2020
Katikapalli Subramanyam Kalyan, S Sangeetha. J Biomed Inform 2020
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Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.