A citation-based method for searching scientific literature

Jin Hyung Lee, Remy Durand, Viviana Gradinaru, Feng Zhang, Inbal Goshen, Dae-Shik Kim, Lief E Fenno, Charu Ramakrishnan, Karl Deisseroth. Nature 2010
Times Cited: 368







List of co-cited articles
1015 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Millisecond-timescale, genetically targeted optical control of neural activity.
Edward S Boyden, Feng Zhang, Ernst Bamberg, Georg Nagel, Karl Deisseroth. Nat Neurosci 2005
25

Mapping brain networks in awake mice using combined optical neural control and fMRI.
M Desai, I Kahn, U Knoblich, J Bernstein, H Atallah, A Yang, N Kopell, R L Buckner, A M Graybiel, C I Moore,[...]. J Neurophysiol 2011
168
17

Cell type specificity of neurovascular coupling in cerebral cortex.
Hana Uhlirova, Kıvılcım Kılıç, Peifang Tian, Martin Thunemann, Michèle Desjardins, Payam A Saisan, Sava Sakadžić, Torbjørn V Ness, Celine Mateo, Qun Cheng,[...]. Elife 2016
104
16

Neurophysiological investigation of the basis of the fMRI signal.
N K Logothetis, J Pauls, M Augath, T Trinath, A Oeltermann. Nature 2001
15

Optogenetic stimulation of GABA neurons can decrease local neuronal activity while increasing cortical blood flow.
Eitan Anenberg, Allen W Chan, Yicheng Xie, Jeffrey M LeDue, Timothy H Murphy. J Cereb Blood Flow Metab 2015
63
20


Light controls cerebral blood flow in naive animals.
Ravi L Rungta, Bruno-Félix Osmanski, Davide Boido, Mickael Tanter, Serge Charpak. Nat Commun 2017
70
15

Sensory and optogenetically driven single-vessel fMRI.
Xin Yu, Yi He, Maosen Wang, Hellmut Merkle, Stephen J Dodd, Afonso C Silva, Alan P Koretsky. Nat Methods 2016
52
21

Simultaneous BOLD fMRI and fiber-optic calcium recording in rat neocortex.
Kristina Schulz, Esther Sydekum, Roland Krueppel, Christoph J Engelbrecht, Felix Schlegel, Aileen Schröter, Markus Rudin, Fritjof Helmchen. Nat Methods 2012
137
10

A mesoscale connectome of the mouse brain.
Seung Wook Oh, Julie A Harris, Lydia Ng, Brent Winslow, Nicholas Cain, Stefan Mihalas, Quanxin Wang, Chris Lau, Leonard Kuan, Alex M Henry,[...]. Nature 2014
10

Optogenetics in neural systems.
Ofer Yizhar, Lief E Fenno, Thomas J Davidson, Murtaza Mogri, Karl Deisseroth. Neuron 2011
973
10


Glial and neuronal control of brain blood flow.
David Attwell, Alastair M Buchan, Serge Charpak, Martin Lauritzen, Brian A Macvicar, Eric A Newman. Nature 2010
9

Neural and hemodynamic responses to optogenetic and sensory stimulation in the rat somatosensory cortex.
Bistra Iordanova, Alberto L Vazquez, Alexander J Poplawsky, Mitsuhiro Fukuda, Seong-Gi Kim. J Cereb Blood Flow Metab 2015
40
22

Brain magnetic resonance imaging with contrast dependent on blood oxygenation.
S Ogawa, T M Lee, A R Kay, D W Tank. Proc Natl Acad Sci U S A 1990
9

Mapping the functional network of medial prefrontal cortex by combining optogenetics and fMRI in awake rats.
Zhifeng Liang, Glenn D R Watson, Kevin D Alloway, Gangchea Lee, Thomas Neuberger, Nanyin Zhang. Neuroimage 2015
47
19

Cortical GABA interneurons in neurovascular coupling: relays for subcortical vasoactive pathways.
Bruno Cauli, Xin-Kang Tong, Armelle Rancillac, Nella Serluca, Bertrand Lambolez, Jean Rossier, Edith Hamel. J Neurosci 2004
374
9

Prefrontal cortical regulation of brainwide circuit dynamics and reward-related behavior.
Emily A Ferenczi, Kelly A Zalocusky, Conor Liston, Logan Grosenick, Melissa R Warden, Debha Amatya, Kiefer Katovich, Hershel Mehta, Brian Patenaude, Charu Ramakrishnan,[...]. Science 2016
265
8


Astrocytes mediate neurovascular signaling to capillary pericytes but not to arterioles.
Anusha Mishra, James P Reynolds, Yang Chen, Alexander V Gourine, Dmitri A Rusakov, David Attwell. Nat Neurosci 2016
244
8

Suppressed neuronal activity and concurrent arteriolar vasoconstriction may explain negative blood oxygenation level-dependent signal.
Anna Devor, Peifang Tian, Nozomi Nishimura, Ivan C Teng, Elizabeth M C Hillman, S N Narayanan, Istvan Ulbert, David A Boas, David Kleinfeld, Anders M Dale. J Neurosci 2007
268
8

Negative functional MRI response correlates with decreases in neuronal activity in monkey visual area V1.
Amir Shmuel, Mark Augath, Axel Oeltermann, Nikos K Logothetis. Nat Neurosci 2006
628
8

Resting-state hemodynamics are spatiotemporally coupled to synchronized and symmetric neural activity in excitatory neurons.
Ying Ma, Mohammed A Shaik, Mariel G Kozberg, Sharon H Kim, Jacob P Portes, Dmitriy Timerman, Elizabeth M C Hillman. Proc Natl Acad Sci U S A 2016
132
8

Low-frequency hippocampal-cortical activity drives brain-wide resting-state functional MRI connectivity.
Russell W Chan, Alex T L Leong, Leon C Ho, Patrick P Gao, Eddie C Wong, Celia M Dong, Xunda Wang, Jufang He, Ying-Shing Chan, Lee Wei Lim,[...]. Proc Natl Acad Sci U S A 2017
47
17

Characterization of the functional MRI response temporal linearity via optical control of neocortical pyramidal neurons.
Itamar Kahn, Mitul Desai, Ulf Knoblich, Jacob Bernstein, Michael Henninger, Ann M Graybiel, Edward S Boyden, Randy L Buckner, Christopher I Moore. J Neurosci 2011
83
9

fMRI response to blue light delivery in the naïve brain: implications for combined optogenetic fMRI studies.
Isabel N Christie, Jack A Wells, Paul Southern, Nephtali Marina, Sergey Kasparov, Alexander V Gourine, Mark F Lythgoe. Neuroimage 2013
78
10

Driving fast-spiking cells induces gamma rhythm and controls sensory responses.
Jessica A Cardin, Marie Carlén, Konstantinos Meletis, Ulf Knoblich, Feng Zhang, Karl Deisseroth, Li-Huei Tsai, Christopher I Moore. Nature 2009
8

Intrinsic signal changes accompanying sensory stimulation: functional brain mapping with magnetic resonance imaging.
S Ogawa, D W Tank, R Menon, J M Ellermann, S G Kim, H Merkle, K Ugurbil. Proc Natl Acad Sci U S A 1992
7

Deciphering laminar-specific neural inputs with line-scanning fMRI.
Xin Yu, Chunqi Qian, Der-yow Chen, Stephen J Dodd, Alan P Koretsky. Nat Methods 2014
80
8


The development and application of optogenetics.
Lief Fenno, Ofer Yizhar, Karl Deisseroth. Annu Rev Neurosci 2011
949
7

Long-range projections coordinate distributed brain-wide neural activity with a specific spatiotemporal profile.
Alex T L Leong, Russell W Chan, Patrick P Gao, Ying-Shing Chan, Kevin K Tsia, Wing-Ho Yung, Ed X Wu. Proc Natl Acad Sci U S A 2016
23
30


Ultra-Slow Single-Vessel BOLD and CBV-Based fMRI Spatiotemporal Dynamics and Their Correlation with Neuronal Intracellular Calcium Signals.
Yi He, Maosen Wang, Xuming Chen, Rolf Pohmann, Jonathan R Polimeni, Klaus Scheffler, Bruce R Rosen, David Kleinfeld, Xin Yu. Neuron 2018
44
15

Capillary K+-sensing initiates retrograde hyperpolarization to increase local cerebral blood flow.
Thomas A Longden, Fabrice Dabertrand, Masayo Koide, Albert L Gonzales, Nathan R Tykocki, Joseph E Brayden, David Hill-Eubanks, Mark T Nelson. Nat Neurosci 2017
195
7

The human brain is intrinsically organized into dynamic, anticorrelated functional networks.
Michael D Fox, Abraham Z Snyder, Justin L Vincent, Maurizio Corbetta, David C Van Essen, Marcus E Raichle. Proc Natl Acad Sci U S A 2005
7

Optogenetic assessment of VIP, PV, SOM and NOS inhibitory neuron activity and cerebral blood flow regulation in mouse somato-sensory cortex.
Michael B Krawchuk, Catherine F Ruff, Xiaoling Yang, Sarah E Ross, Alberto L Vazquez. J Cereb Blood Flow Metab 2020
21
33

Cortical depth-specific microvascular dilation underlies laminar differences in blood oxygenation level-dependent functional MRI signal.
Peifang Tian, Ivan C Teng, Larry D May, Ronald Kurz, Kun Lu, Miriam Scadeng, Elizabeth M C Hillman, Alex J De Crespigny, Helen E D'Arceuil, Joseph B Mandeville,[...]. Proc Natl Acad Sci U S A 2010
184
6


Stimulus-induced changes in blood flow and 2-deoxyglucose uptake dissociate in ipsilateral somatosensory cortex.
Anna Devor, Elizabeth M C Hillman, Peifang Tian, Christian Waeber, Ivan C Teng, Lana Ruvinskaya, Mark H Shalinsky, Haihao Zhu, Robert H Haslinger, Suresh N Narayanan,[...]. J Neurosci 2008
128
6


Network modelling methods for FMRI.
Stephen M Smith, Karla L Miller, Gholamreza Salimi-Khorshidi, Matthew Webster, Christian F Beckmann, Thomas E Nichols, Joseph D Ramsey, Mark W Woolrich. Neuroimage 2011
965
6

A multi-modal parcellation of human cerebral cortex.
Matthew F Glasser, Timothy S Coalson, Emma C Robinson, Carl D Hacker, John Harwell, Essa Yacoub, Kamil Ugurbil, Jesper Andersson, Christian F Beckmann, Mark Jenkinson,[...]. Nature 2016
6

Time to wake up: Studying neurovascular coupling and brain-wide circuit function in the un-anesthetized animal.
Yu-Rong Gao, Yuncong Ma, Qingguang Zhang, Aaron T Winder, Zhifeng Liang, Lilith Antinori, Patrick J Drew, Nanyin Zhang. Neuroimage 2017
68
8

Fiber-optic implant for simultaneous fluorescence-based calcium recordings and BOLD fMRI in mice.
Felix Schlegel, Yaroslav Sych, Aileen Schroeter, Jillian Stobart, Bruno Weber, Fritjof Helmchen, Markus Rudin. Nat Protoc 2018
27
22

Brain-state dependent astrocytic Ca2+ signals are coupled to both positive and negative BOLD-fMRI signals.
Maosen Wang, Yi He, Terrence J Sejnowski, Xin Yu. Proc Natl Acad Sci U S A 2018
42
14

Correspondence of the brain's functional architecture during activation and rest.
Stephen M Smith, Peter T Fox, Karla L Miller, David C Glahn, P Mickle Fox, Clare E Mackay, Nicola Filippini, Kate E Watkins, Roberto Toro, Angela R Laird,[...]. Proc Natl Acad Sci U S A 2009
6

Ultrasensitive fluorescent proteins for imaging neuronal activity.
Tsai-Wen Chen, Trevor J Wardill, Yi Sun, Stefan R Pulver, Sabine L Renninger, Amy Baohan, Eric R Schreiter, Rex A Kerr, Michael B Orger, Vivek Jayaraman,[...]. Nature 2013
6

Independent optical excitation of distinct neural populations.
Nathan C Klapoetke, Yasunobu Murata, Sung Soo Kim, Stefan R Pulver, Amanda Birdsey-Benson, Yong Ku Cho, Tania K Morimoto, Amy S Chuong, Eric J Carpenter, Zhijian Tian,[...]. Nat Methods 2014
892
6

Large-scale topology and the default mode network in the mouse connectome.
James M Stafford, Benjamin R Jarrett, Oscar Miranda-Dominguez, Brian D Mills, Nicholas Cain, Stefan Mihalas, Garet P Lahvis, K Matthew Lattal, Suzanne H Mitchell, Stephen V David,[...]. Proc Natl Acad Sci U S A 2014
127
6


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.