A citation-based method for searching scientific literature


List of co-cited articles
2252 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Autophagosome formation from membrane compartments enriched in phosphatidylinositol 3-phosphate and dynamically connected to the endoplasmic reticulum.
Elizabeth L Axe, Simon A Walker, Maria Manifava, Priya Chandra, H Llewelyn Roderick, Anja Habermann, Gareth Griffiths, Nicholas T Ktistakis. J Cell Biol 2008
33

AMPK and mTOR regulate autophagy through direct phosphorylation of Ulk1.
Joungmok Kim, Mondira Kundu, Benoit Viollet, Kun-Liang Guan. Nat Cell Biol 2011
29

WIPI2 links LC3 conjugation with PI3P, autophagosome formation, and pathogen clearance by recruiting Atg12-5-16L1.
Hannah C Dooley, Minoo Razi, Hannah E J Polson, Stephen E Girardin, Michael I Wilson, Sharon A Tooze. Mol Cell 2014
420
26

Nutrient-dependent mTORC1 association with the ULK1-Atg13-FIP200 complex required for autophagy.
Nao Hosokawa, Taichi Hara, Takeshi Kaizuka, Chieko Kishi, Akito Takamura, Yutaka Miura, Shun-ichiro Iemura, Tohru Natsume, Kenji Takehana, Naoyuki Yamada,[...]. Mol Biol Cell 2009
26

The role of Atg proteins in autophagosome formation.
Noboru Mizushima, Tamotsu Yoshimori, Yoshinori Ohsumi. Annu Rev Cell Dev Biol 2011
25

What is the advantage of a transient precursor in autophagosome biogenesis?
Nicholas T Ktistakis, Simon Andrews, Joshua Long. Autophagy 2011
435
21

LC3, a mammalian homologue of yeast Apg8p, is localized in autophagosome membranes after processing.
Y Kabeya, N Mizushima, T Ueno, A Yamamoto, T Kirisako, T Noda, E Kominami, Y Ohsumi, T Yoshimori. EMBO J 2000
21

p62/SQSTM1 binds directly to Atg8/LC3 to facilitate degradation of ubiquitinated protein aggregates by autophagy.
Serhiy Pankiv, Terje Høyvarde Clausen, Trond Lamark, Andreas Brech, Jack-Ansgar Bruun, Heidi Outzen, Aud Øvervatn, Geir Bjørkøy, Terje Johansen. J Biol Chem 2007
21

Spatiotemporal Control of ULK1 Activation by NDP52 and TBK1 during Selective Autophagy.
Jose Norberto S Vargas, Chunxin Wang, Eric Bunker, Ling Hao, Dragan Maric, Giampietro Schiavo, Felix Randow, Richard J Youle. Mol Cell 2019
176
20

The ubiquitin kinase PINK1 recruits autophagy receptors to induce mitophagy.
Michael Lazarou, Danielle A Sliter, Lesley A Kane, Shireen A Sarraf, Chunxin Wang, Jonathon L Burman, Dionisia P Sideris, Adam I Fogel, Richard J Youle. Nature 2015
20

ULK1 induces autophagy by phosphorylating Beclin-1 and activating VPS34 lipid kinase.
Ryan C Russell, Ye Tian, Haixin Yuan, Hyun Woo Park, Yu-Yun Chang, Joungmok Kim, Haerin Kim, Thomas P Neufeld, Andrew Dillin, Kun-Liang Guan. Nat Cell Biol 2013
924
20

ATG2 transports lipids to promote autophagosome biogenesis.
Diana P Valverde, Shenliang Yu, Venkata Boggavarapu, Nikit Kumar, Joshua A Lees, Thomas Walz, Karin M Reinisch, Thomas J Melia. J Cell Biol 2019
170
19

Mammalian Atg18 (WIPI2) localizes to omegasome-anchored phagophores and positively regulates LC3 lipidation.
Hannah E J Polson, Jane de Lartigue, Daniel J Rigden, Marco Reedijk, Sylvie Urbé, Michael J Clague, Sharon A Tooze. Autophagy 2010
425
19

ULK1.ATG13.FIP200 complex mediates mTOR signaling and is essential for autophagy.
Ian G Ganley, Du H Lam, Junru Wang, Xiaojun Ding, She Chen, Xuejun Jiang. J Biol Chem 2009
929
19

The autophagosome: origins unknown, biogenesis complex.
Christopher A Lamb, Tamotsu Yoshimori, Sharon A Tooze. Nat Rev Mol Cell Biol 2013
845
18

Atg8 family LC3/GABARAP proteins are crucial for autophagosome-lysosome fusion but not autophagosome formation during PINK1/Parkin mitophagy and starvation.
Thanh Ngoc Nguyen, Benjamin Scott Padman, Joanne Usher, Viola Oorschot, Georg Ramm, Michael Lazarou. J Cell Biol 2016
306
18

A ubiquitin-like system mediates protein lipidation.
Y Ichimura, T Kirisako, T Takao, Y Satomi, Y Shimonishi, N Ishihara, N Mizushima, I Tanida, E Kominami, M Ohsumi,[...]. Nature 2000
18

Atg9 vesicles are an important membrane source during early steps of autophagosome formation.
Hayashi Yamamoto, Soichiro Kakuta, Tomonobu M Watanabe, Akira Kitamura, Takayuki Sekito, Chika Kondo-Kakuta, Rie Ichikawa, Masataka Kinjo, Yoshinori Ohsumi. J Cell Biol 2012
367
18

Mechanism and medical implications of mammalian autophagy.
Ivan Dikic, Zvulun Elazar. Nat Rev Mol Cell Biol 2018
17

A subdomain of the endoplasmic reticulum forms a cradle for autophagosome formation.
Mitsuko Hayashi-Nishino, Naonobu Fujita, Takeshi Noda, Akihito Yamaguchi, Tamotsu Yoshimori, Akitsugu Yamamoto. Nat Cell Biol 2009
731
17

Atg2 mediates direct lipid transfer between membranes for autophagosome formation.
Takuo Osawa, Tetsuya Kotani, Tatsuya Kawaoka, Eri Hirata, Kuninori Suzuki, Hitoshi Nakatogawa, Yoshinori Ohsumi, Nobuo N Noda. Nat Struct Mol Biol 2019
156
17

ULK-Atg13-FIP200 complexes mediate mTOR signaling to the autophagy machinery.
Chang Hwa Jung, Chang Bong Jun, Seung-Hyun Ro, Young-Mi Kim, Neil Michael Otto, Jing Cao, Mondira Kundu, Do-Hyung Kim. Mol Biol Cell 2009
17

Phosphorylation of ULK1 (hATG1) by AMP-activated protein kinase connects energy sensing to mitophagy.
Daniel F Egan, David B Shackelford, Maria M Mihaylova, Sara Gelino, Rebecca A Kohnz, William Mair, Debbie S Vasquez, Aashish Joshi, Dana M Gwinn, Rebecca Taylor,[...]. Science 2011
17

FIP200, a ULK-interacting protein, is required for autophagosome formation in mammalian cells.
Taichi Hara, Akito Takamura, Chieko Kishi, Shun-Ichiro Iemura, Tohru Natsume, Jun-Lin Guan, Noboru Mizushima. J Cell Biol 2008
657
17

Phosphorylation of the autophagy receptor optineurin restricts Salmonella growth.
Philipp Wild, Hesso Farhan, David G McEwan, Sebastian Wagner, Vladimir V Rogov, Nathan R Brady, Benjamin Richter, Jelena Korac, Oliver Waidmann, Chunaram Choudhary,[...]. Science 2011
862
16

The Cargo Receptor NDP52 Initiates Selective Autophagy by Recruiting the ULK Complex to Cytosol-Invading Bacteria.
Benjamin J Ravenhill, Keith B Boyle, Natalia von Muhlinen, Cara J Ellison, Glenn R Masson, Elsje G Otten, Agnes Foeglein, Roger Williams, Felix Randow. Mol Cell 2019
134
16

Autophagosomes form at ER-mitochondria contact sites.
Maho Hamasaki, Nobumichi Furuta, Atsushi Matsuda, Akiko Nezu, Akitsugu Yamamoto, Naonobu Fujita, Hiroko Oomori, Takeshi Noda, Tokuko Haraguchi, Yasushi Hiraoka,[...]. Nature 2013
16

Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition).
Daniel J Klionsky, Kotb Abdelmohsen, Akihisa Abe, Md Joynal Abedin, Hagai Abeliovich, Abraham Acevedo Arozena, Hiroaki Adachi, Christopher M Adams, Peter D Adams, Khosrow Adeli,[...]. Autophagy 2016
16

Autophagy initiation by ULK complex assembly on ER tubulovesicular regions marked by ATG9 vesicles.
Eleftherios Karanasios, Simon A Walker, Hanneke Okkenhaug, Maria Manifava, Eric Hummel, Hans Zimmermann, Qashif Ahmed, Marie-Charlotte Domart, Lucy Collinson, Nicholas T Ktistakis. Nat Commun 2016
160
15

3D tomography reveals connections between the phagophore and endoplasmic reticulum.
Päivi Ylä-Anttila, Helena Vihinen, Eija Jokitalo, Eeva-Liisa Eskelinen. Autophagy 2009
455
15

Insights into autophagosome biogenesis from structural and biochemical analyses of the ATG2A-WIPI4 complex.
Saikat Chowdhury, Chinatsu Otomo, Alexander Leitner, Kazuto Ohashi, Ruedi Aebersold, Gabriel C Lander, Takanori Otomo. Proc Natl Acad Sci U S A 2018
96
15

Beclin 1 forms two distinct phosphatidylinositol 3-kinase complexes with mammalian Atg14 and UVRAG.
Eisuke Itakura, Chieko Kishi, Kinji Inoue, Noboru Mizushima. Mol Biol Cell 2008
793
15

FIP200 Claw Domain Binding to p62 Promotes Autophagosome Formation at Ubiquitin Condensates.
Eleonora Turco, Marie Witt, Christine Abert, Tobias Bock-Bierbaum, Ming-Yuan Su, Riccardo Trapannone, Martin Sztacho, Alberto Danieli, Xiaoshan Shi, Gabriele Zaffagnini,[...]. Mol Cell 2019
124
15

Hierarchy of Atg proteins in pre-autophagosomal structure organization.
Kuninori Suzuki, Yuka Kubota, Takayuki Sekito, Yoshinori Ohsumi. Genes Cells 2007
496
15

The Atg12-Atg5 conjugate has a novel E3-like activity for protein lipidation in autophagy.
Takao Hanada, Nobuo N Noda, Yoshinori Satomi, Yoshinobu Ichimura, Yuko Fujioka, Toshifumi Takao, Fuyuhiko Inagaki, Yoshinori Ohsumi. J Biol Chem 2007
738
15

The autophagic membrane tether ATG2A transfers lipids between membranes.
Shintaro Maeda, Chinatsu Otomo, Takanori Otomo. Elife 2019
113
15

Dynamic association of the ULK1 complex with omegasomes during autophagy induction.
Eleftherios Karanasios, Eloise Stapleton, Maria Manifava, Takeshi Kaizuka, Noboru Mizushima, Simon A Walker, Nicholas T Ktistakis. J Cell Sci 2013
144
14

The Atg16L complex specifies the site of LC3 lipidation for membrane biogenesis in autophagy.
Naonobu Fujita, Takashi Itoh, Hiroko Omori, Mitsunori Fukuda, Takeshi Noda, Tamotsu Yoshimori. Mol Biol Cell 2008
703
14

Mammalian Atg2 proteins are essential for autophagosome formation and important for regulation of size and distribution of lipid droplets.
Anoop Kumar G Velikkakath, Taki Nishimura, Eiko Oita, Naotada Ishihara, Noboru Mizushima. Mol Biol Cell 2012
231
13

Atg9 establishes Atg2-dependent contact sites between the endoplasmic reticulum and phagophores.
Rubén Gómez-Sánchez, Jaqueline Rose, Rodrigo Guimarães, Muriel Mari, Daniel Papinski, Ester Rieter, Willie J Geerts, Ralph Hardenberg, Claudine Kraft, Christian Ungermann,[...]. J Cell Biol 2018
110
13

Autophagy: renovation of cells and tissues.
Noboru Mizushima, Masaaki Komatsu. Cell 2011
13

Fine mapping of autophagy-related proteins during autophagosome formation in Saccharomyces cerevisiae.
Kuninori Suzuki, Manami Akioka, Chika Kondo-Kakuta, Hayashi Yamamoto, Yoshinori Ohsumi. J Cell Sci 2013
202
13

LC3 and GATE-16/GABARAP subfamilies are both essential yet act differently in autophagosome biogenesis.
Hilla Weidberg, Elena Shvets, Tomer Shpilka, Frida Shimron, Vera Shinder, Zvulun Elazar. EMBO J 2010
457
13


Tor-mediated induction of autophagy via an Apg1 protein kinase complex.
Y Kamada, T Funakoshi, T Shintani, K Nagano, M Ohsumi, Y Ohsumi. J Cell Biol 2000
836
13

The role of the Atg1/ULK1 complex in autophagy regulation.
Noboru Mizushima. Curr Opin Cell Biol 2010
718
13


A protein conjugation system essential for autophagy.
N Mizushima, T Noda, T Yoshimori, Y Tanaka, T Ishii, M D George, D J Klionsky, M Ohsumi, Y Ohsumi. Nature 1998
13

An Atg9-containing compartment that functions in the early steps of autophagosome biogenesis.
Muriel Mari, Janice Griffith, Ester Rieter, Lakshmi Krishnappa, Daniel J Klionsky, Fulvio Reggiori. J Cell Biol 2010
305
13

Dynamic and transient interactions of Atg9 with autophagosomes, but not membrane integration, are required for autophagy.
A Orsi, M Razi, H C Dooley, D Robinson, A E Weston, L M Collinson, S A Tooze. Mol Biol Cell 2012
331
13


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.