A citation-based method for searching scientific literature

Lindsay B McKenna, Jonathan Schug, Anastassios Vourekas, Jaime B McKenna, Nuria C Bramswig, Joshua R Friedman, Klaus H Kaestner. Gastroenterology 2010
Times Cited: 210







List of co-cited articles
730 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



MicroRNAs are differentially expressed in ulcerative colitis and alter expression of macrophage inflammatory peptide-2 alpha.
Feng Wu, Michelle Zikusoka, Anil Trindade, Themistocles Dassopoulos, Mary L Harris, Theodore M Bayless, Steven R Brant, Shukti Chakravarti, John H Kwon. Gastroenterology 2008
375
17

Epithelial microRNAs regulate gut mucosal immunity via epithelium-T cell crosstalk.
Moshe Biton, Avi Levin, Michal Slyper, Irit Alkalay, Elad Horwitz, Hagar Mor, Sharon Kredo-Russo, Tali Avnit-Sagi, Gady Cojocaru, Farid Zreik,[...]. Nat Immunol 2011
138
15



MicroRNA regulation of intestinal epithelial tight junction permeability.
Dongmei Ye, Shuhong Guo, Rana Al-Sadi, Thomas Y Ma. Gastroenterology 2011
180
14

The Host Shapes the Gut Microbiota via Fecal MicroRNA.
Shirong Liu, Andre Pires da Cunha, Rafael M Rezende, Ron Cialic, Zhiyun Wei, Lynn Bry, Laurie E Comstock, Roopali Gandhi, Howard L Weiner. Cell Host Microbe 2016
302
14

Microbiota modulate host gene expression via microRNAs.
Guillaume Dalmasso, Hang Thi Thu Nguyen, Yutao Yan, Hamed Laroui, Moiz A Charania, Saravanan Ayyadurai, Shanthi V Sitaraman, Didier Merlin. PLoS One 2011
108
12

Peripheral blood microRNAs distinguish active ulcerative colitis and Crohn's disease.
Feng Wu, Natalie Jia Guo, Hongying Tian, Michael Marohn, Susan Gearhart, Theodore M Bayless, Steven R Brant, John H Kwon. Inflamm Bowel Dis 2011
150
9

MicroRNAs: new players in IBD.
R Kalla, N T Ventham, N A Kennedy, J F Quintana, E R Nimmo, A H Buck, J Satsangi. Gut 2015
149
9

Predicting effective microRNA target sites in mammalian mRNAs.
Vikram Agarwal, George W Bell, Jin-Wu Nam, David P Bartel. Elife 2015
9

MicroRNAs: small RNAs with a big role in gene regulation.
Lin He, Gregory J Hannon. Nat Rev Genet 2004
8

Overexpression of miR-21 in patients with ulcerative colitis impairs intestinal epithelial barrier function through targeting the Rho GTPase RhoB.
Yongzhi Yang, Yanlei Ma, Chenzhang Shi, Hongqi Chen, Huizhen Zhang, Niwei Chen, Peng Zhang, Feng Wang, Jun Yang, Jianjun Yang,[...]. Biochem Biophys Res Commun 2013
80
10

Identification of microRNAs associated with ileal and colonic Crohn's disease.
Feng Wu, Simin Zhang, Themistocles Dassopoulos, Mary L Harris, Theodore M Bayless, Stephen J Meltzer, Steven R Brant, John H Kwon. Inflamm Bowel Dis 2010
201
8

Identification of restricted subsets of mature microRNA abnormally expressed in inactive colonic mucosa of patients with inflammatory bowel disease.
Magali Fasseu, Xavier Tréton, Cécile Guichard, Eric Pedruzzi, Dominique Cazals-Hatem, Christophe Richard, Thomas Aparicio, Fanny Daniel, Jean-Claude Soulé, Richard Moreau,[...]. PLoS One 2010
190
8

Pro-inflammatory miR-223 mediates the cross-talk between the IL23 pathway and the intestinal barrier in inflammatory bowel disease.
Huiling Wang, Kang Chao, Siew Chien Ng, Alfa Hc Bai, Qiao Yu, Jun Yu, Manying Li, Yi Cui, Minhu Chen, Ji-Fan Hu,[...]. Genome Biol 2016
88
9

MicroRNAs and the regulation of intestinal homeostasis.
Marah C Runtsch, June L Round, Ryan M O'Connell. Front Genet 2014
51
15

Functional Transcriptomics in Diverse Intestinal Epithelial Cell Types Reveals Robust MicroRNA Sensitivity in Intestinal Stem Cells to Microbial Status.
Bailey C E Peck, Amanda T Mah, Wendy A Pitman, Shengli Ding, P Kay Lund, Praveen Sethupathy. J Biol Chem 2017
56
14

Identification of serum and tissue micro-RNA expression profiles in different stages of inflammatory bowel disease.
M Iborra, F Bernuzzi, C Correale, S Vetrano, G Fiorino, B Beltrán, F Marabita, M Locati, A Spinelli, P Nos,[...]. Clin Exp Immunol 2013
85
9

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
7

MicroRNA-29a regulates intestinal membrane permeability in patients with irritable bowel syndrome.
QiQi Zhou, Wiley W Souba, Carlo M Croce, G Nicholas Verne. Gut 2010
177
7

MicroRNA 29 targets nuclear factor-κB-repressing factor and Claudin 1 to increase intestinal permeability.
QiQi Zhou, Stefan Costinean, Carlo M Croce, Alan R Brasier, Shehzad Merwat, Scott A Larson, Sarpreet Basra, G Nicholas Verne. Gastroenterology 2015
88
7

MicroRNA-7 modulates CD98 expression during intestinal epithelial cell differentiation.
Hang Thi Thu Nguyen, Guillaume Dalmasso, Yutao Yan, Hamed Laroui, Stephanie Dahan, Lloyd Mayer, Shanthi V Sitaraman, Didier Merlin. J Biol Chem 2010
85
8

The emerging role of miRNAs in inflammatory bowel disease: a review.
Christopher G Chapman, Joel Pekow. Therap Adv Gastroenterol 2015
96
7

Regulation of microRNA biogenesis.
Minju Ha, V Narry Kim. Nat Rev Mol Cell Biol 2014
7

An essential mesenchymal function for miR-143/145 in intestinal epithelial regeneration.
Raghu R Chivukula, Guanglu Shi, Asha Acharya, Eric W Mills, Lauren R Zeitels, Joselin L Anandam, Abier A Abdelnaby, Glen C Balch, John C Mansour, Adam C Yopp,[...]. Cell 2014
141
7

Increased expression of microRNA in the inflamed colonic mucosa of patients with active ulcerative colitis.
Tomohisa Takagi, Yuji Naito, Katsura Mizushima, Ikuhiro Hirata, Nobuaki Yagi, Naoya Tomatsuri, Takashi Ando, Yuichi Oyamada, Yutaka Isozaki, Hitoshi Hongo,[...]. J Gastroenterol Hepatol 2010
136
7


Cytoscape: a software environment for integrated models of biomolecular interaction networks.
Paul Shannon, Andrew Markiel, Owen Ozier, Nitin S Baliga, Jonathan T Wang, Daniel Ramage, Nada Amin, Benno Schwikowski, Trey Ideker. Genome Res 2003
7

The nuclear RNase III Drosha initiates microRNA processing.
Yoontae Lee, Chiyoung Ahn, Jinju Han, Hyounjeong Choi, Jaekwang Kim, Jeongbin Yim, Junho Lee, Patrick Provost, Olof Rådmark, Sunyoung Kim,[...]. Nature 2003
6

The murine caecal microRNA signature depends on the presence of the endogenous microbiota.
Natasha Singh, Elize A Shirdel, Levi Waldron, Regan-Heng Zhang, Igor Jurisica, Elena M Comelli. Int J Biol Sci 2012
69
8

miR-20b, miR-98, miR-125b-1*, and let-7e* as new potential diagnostic biomarkers in ulcerative colitis.
Mehmet Coskun, Jacob Tveiten Bjerrum, Jakob Benedict Seidelin, Jesper Thorvald Troelsen, Jørgen Olsen, Ole Haagen Nielsen. World J Gastroenterol 2013
60
10

miR-30 Family Controls Proliferation and Differentiation of Intestinal Epithelial Cell Models by Directing a Broad Gene Expression Program That Includes SOX9 and the Ubiquitin Ligase Pathway.
Bailey C E Peck, John Sincavage, Sydney Feinstein, Amanda T Mah, James G Simmons, P Kay Lund, Praveen Sethupathy. J Biol Chem 2016
27
22

Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.
M Ashburner, C A Ball, J A Blake, D Botstein, H Butler, J M Cherry, A P Davis, K Dolinski, S S Dwight, J T Eppig,[...]. Nat Genet 2000
6


Downregulation of microRNA-107 in intestinal CD11c(+) myeloid cells in response to microbiota and proinflammatory cytokines increases IL-23p19 expression.
Xiaochang Xue, Anthony T Cao, Xiaocang Cao, Suxia Yao, Eric D Carlsen, Lynn Soong, Chang-Gong Liu, Xiuping Liu, Zhanju Liu, L Wayne Duck,[...]. Eur J Immunol 2014
43
13

MicroRNAs in stress signaling and human disease.
Joshua T Mendell, Eric N Olson. Cell 2012
6

MicroRNAs determine human intestinal epithelial cell fate.
Guillaume Dalmasso, Hang Thi Thu Nguyen, Yutao Yan, Hamed Laroui, Shanthi Srinivasan, Shanthi V Sitaraman, Didier Merlin. Differentiation 2010
41
14

Circulating MicroRNA in inflammatory bowel disease.
Archanioti Paraskevi, George Theodoropoulos, Ioannis Papaconstantinou, Gerassimos Mantzaris, Nikolaos Nikiteas, Maria Gazouli. J Crohns Colitis 2012
160
6


MicroRNAs in inflammatory bowel disease.
Joel R Pekow, John H Kwon. Inflamm Bowel Dis 2012
104
6

The microRNA spectrum in 12 body fluids.
Jessica A Weber, David H Baxter, Shile Zhang, David Y Huang, Kuo How Huang, Ming Jen Lee, David J Galas, Kai Wang. Clin Chem 2010
6

MicroRNA-92b regulates expression of the oligopeptide transporter PepT1 in intestinal epithelial cells.
Guillaume Dalmasso, Hang Thi Thu Nguyen, Yutao Yan, Hamed Laroui, Moiz A Charania, Tracy S Obertone, Shanthi V Sitaraman, Didier Merlin. Am J Physiol Gastrointest Liver Physiol 2011
43
13

Characterization of microRNAs in serum: a novel class of biomarkers for diagnosis of cancer and other diseases.
Xi Chen, Yi Ba, Lijia Ma, Xing Cai, Yuan Yin, Kehui Wang, Jigang Guo, Yujing Zhang, Jiangning Chen, Xing Guo,[...]. Cell Res 2008
5


The widespread regulation of microRNA biogenesis, function and decay.
Jacek Krol, Inga Loedige, Witold Filipowicz. Nat Rev Genet 2010
5

Epithelium-Intrinsic MicroRNAs Contribute to Mucosal Immune Homeostasis by Promoting M-Cell Maturation.
Gaku Nakato, Koji Hase, Takao Sato, Shunsuke Kimura, Sayuri Sakakibara, Machiko Sugiyama, Yuuki Obata, Misaho Hanazato, Toshihiko Iwanaga, Hiroshi Ohno. PLoS One 2016
8
62

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
5

MicroRNAs regulate tight junction proteins and modulate epithelial/endothelial barrier functions.
Christoph Cichon, Harshana Sabharwal, Christian Rüter, M Alexander Schmidt. Tissue Barriers 2014
55
9

Stem cells, self-renewal, and differentiation in the intestinal epithelium.
Laurens G van der Flier, Hans Clevers. Annu Rev Physiol 2009
962
5


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.