A citation-based method for searching scientific literature

I-Ming Cho, Lien B Lai, Dwi Susanti, Biswarup Mukhopadhyay, Venkat Gopalan. Proc Natl Acad Sci U S A 2010
Times Cited: 55







List of co-cited articles
634 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Functional reconstitution and characterization of Pyrococcus furiosus RNase P.
Hsin-Yue Tsai, Dileep K Pulukkunat, Walter K Woznick, Venkat Gopalan. Proc Natl Acad Sci U S A 2006
71
50

Structure of a bacterial ribonuclease P holoenzyme in complex with tRNA.
Nicholas J Reiter, Amy Osterman, Alfredo Torres-Larios, Kerren K Swinger, Tao Pan, Alfonso Mondragón. Nature 2010
193
49

The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme.
C Guerrier-Takada, K Gardiner, T Marsh, N Pace, S Altman. Cell 1983
41

A fifth protein subunit Ph1496p elevates the optimum temperature for the ribonuclease P activity from Pyrococcus horikoshii OT3.
Hideo Fukuhara, Mayumi Kifusa, Mitsutoshi Watanabe, Atsushi Terada, Takashi Honda, Tomoyuki Numata, Yoshimitsu Kakuta, Makoto Kimura. Biochem Biophys Res Commun 2006
50
46

Dissecting functional cooperation among protein subunits in archaeal RNase P, a catalytic ribonucleoprotein complex.
Wen-Yi Chen, Dileep K Pulukkunat, I-Ming Cho, Hsin-Yue Tsai, Venkat Gopalan. Nucleic Acids Res 2010
37
59

RNase P RNAs from some Archaea are catalytically active.
J A Pannucci, E S Haas, T A Hall, J K Harris, J W Brown. Proc Natl Acad Sci U S A 1999
179
36

Eukaryotic RNase P RNA mediates cleavage in the absence of protein.
Ema Kikovska, Staffan G Svärd, Leif A Kirsebom. Proc Natl Acad Sci U S A 2007
126
36

Reconstitution of archaeal ribonuclease P from RNA and four protein components.
Yoshiaki Kouzuma, Masashi Mizoguchi, Hisanori Takagi, Hideo Fukuhara, Masayo Tsukamoto, Tomoyuki Numata, Makoto Kimura. Biochem Biophys Res Commun 2003
70
36


The kink-turn: a new RNA secondary structure motif.
D J Klein, T M Schmeing, P B Moore, T A Steitz. EMBO J 2001
576
34


Archaeal/eukaryal RNase P: subunits, functions and RNA diversification.
Nayef Jarrous, Venkat Gopalan. Nucleic Acids Res 2010
83
32

Of proteins and RNA: the RNase P/MRP family.
Olga Esakova, Andrey S Krasilnikov. RNA 2010
156
32

Unexpected diversity of RNase P, an ancient tRNA processing enzyme: challenges and prospects.
Lien B Lai, Agustín Vioque, Leif A Kirsebom, Venkat Gopalan. FEBS Lett 2010
99
30

Crystal structure of the RNA component of bacterial ribonuclease P.
Alfredo Torres-Larios, Kerren K Swinger, Andrey S Krasilnikov, Tao Pan, Alfonso Mondragón. Nature 2005
158
29

Binding of L7Ae protein to the K-turn of archaeal snoRNAs: a shared RNA binding motif for C/D and H/ACA box snoRNAs in Archaea.
Timofey S Rozhdestvensky, Thean Hock Tang, Inna V Tchirkova, Jürgen Brosius, Jean-Pierre Bachellerie, Alexander Hüttenhofer. Nucleic Acids Res 2003
169
29


The complete atomic structure of the large ribosomal subunit at 2.4 A resolution.
N Ban, P Nissen, J Hansen, P B Moore, T A Steitz. Science 2000
27




RNase P: interface of the RNA and protein worlds.
Donald Evans, Steven M Marquez, Norman R Pace. Trends Biochem Sci 2006
151
25

Cleavage of model substrates by archaeal RNase P: role of protein cofactors in cleavage-site selection.
Sylvie Sinapah, Shiying Wu, Yu Chen, B M Fredrik Pettersson, Venkat Gopalan, Leif A Kirsebom. Nucleic Acids Res 2011
18
77


RNase P without RNA: identification and functional reconstitution of the human mitochondrial tRNA processing enzyme.
Johann Holzmann, Peter Frank, Esther Löffler, Keiryn L Bennett, Christopher Gerner, Walter Rossmanith. Cell 2008
380
23


Crystal structure of the spliceosomal 15.5kD protein bound to a U4 snRNA fragment.
I Vidovic, S Nottrott, K Hartmuth, R Lührmann, R Ficner. Mol Cell 2000
234
23

Archaeal ribosomal protein L7 is a functional homolog of the eukaryotic 15.5kD/Snu13p snoRNP core protein.
Jeffrey F Kuhn, Elizabeth J Tran, E Stuart Maxwell. Nucleic Acids Res 2002
119
21


Crystal structure of a bacterial ribonuclease P RNA.
Alexei V Kazantsev, Angelika A Krivenko, Daniel J Harrington, Stephen R Holbrook, Paul D Adams, Norman R Pace. Proc Natl Acad Sci U S A 2005
156
20

Crystal structure of a ribonuclease P protein Ph1601p from Pyrococcus horikoshii OT3: an archaeal homologue of human nuclear ribonuclease P protein Rpp21.
Yoshimitsu Kakuta, Ikuko Ishimatsu, Tomoyuki Numata, Kazumi Kimura, Min Yao, Isao Tanaka, Makoto Kimura. Biochemistry 2005
31
35


Structure of Pfu Pop5, an archaeal RNase P protein.
Ross C Wilson, Christopher J Bohlen, Mark P Foster, Charles E Bell. Proc Natl Acad Sci U S A 2006
40
27

A single Arabidopsis organellar protein has RNase P activity.
Anthony Gobert, Bernard Gutmann, Andreas Taschner, Markus Gössringer, Johann Holzmann, Roland K Hartmann, Walter Rossmanith, Philippe Giegé. Nat Struct Mol Biol 2010
145
20

Structure of Mth11/Mth Rpp29, an essential protein subunit of archaeal and eukaryotic RNase P.
William P Boomershine, Craig A McElroy, Hsin-Yue Tsai, Ross C Wilson, Venkat Gopalan, Mark P Foster. Proc Natl Acad Sci U S A 2003
39
28


Evidence for induced fit in bacterial RNase P RNA-mediated cleavage.
Mathias Brännvall, Ema Kikovska, Shiying Wu, Leif A Kirsebom. J Mol Biol 2007
30
33

Ribonuclease P: the evolution of an ancient RNA enzyme.
Scott C Walker, David R Engelke. Crit Rev Biochem Mol Biol 2006
139
18

Discovery of a minimal form of RNase P in Pyrobaculum.
Lien B Lai, Patricia P Chan, Aaron E Cozen, David L Bernick, James W Brown, Venkat Gopalan, Todd M Lowe. Proc Natl Acad Sci U S A 2010
34
29

New insight into RNase P RNA structure from comparative analysis of the archaeal RNA.
J K Harris, E S Haas, D Williams, D N Frank, J W Brown. RNA 2001
79
18

RNase P RNA-mediated cleavage.
Leif A Kirsebom, Stefan Trobro. IUBMB Life 2009
39
25


Induced fit of RNA on binding the L7Ae protein to the kink-turn motif.
Ben Turner, Sonya E Melcher, Timothy J Wilson, David G Norman, David M J Lilley. RNA 2005
87
18

The kink-turn motif in RNA is dimorphic, and metal ion-dependent.
Terry A Goody, Sonya E Melcher, David G Norman, David M J Lilley. RNA 2004
121
18

YbxF and YlxQ are bacterial homologs of L7Ae and bind K-turns but not K-loops.
Nathan J Baird, Jinwei Zhang, Tomoko Hamma, Adrian R Ferré-D'Amaré. RNA 2012
35
28

The L7Ae protein binds to two kink-turns in the Pyrococcus furiosus RNase P RNA.
Stella M Lai, Lien B Lai, Mark P Foster, Venkat Gopalan. Nucleic Acids Res 2014
12
83

A novel double kink-turn module in euryarchaeal RNase P RNAs.
Lien B Lai, Akiko Tanimoto, Stella M Lai, Wen-Yi Chen, Ila A Marathe, Eric Westhof, Vicki H Wysocki, Venkat Gopalan. Nucleic Acids Res 2017
17
58

Eukaryotic ribonucleases P/MRP: the crystal structure of the P3 domain.
Anna Perederina, Olga Esakova, Chao Quan, Elena Khanova, Andrey S Krasilnikov. EMBO J 2010
42
21

A view of RNase P.
Sidney Altman. Mol Biosyst 2007
64
16



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.