A citation-based method for searching scientific literature

Vidisha Tripathi, Jonathan D Ellis, Zhen Shen, David Y Song, Qun Pan, Andrew T Watt, Susan M Freier, C Frank Bennett, Alok Sharma, Paula A Bubulya, Benjamin J Blencowe, Supriya G Prasanth, Kannanganattu V Prasanth. Mol Cell 2010
Times Cited: 1445







List of co-cited articles
1138 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.
Thomas Derrien, Rory Johnson, Giovanni Bussotti, Andrea Tanzer, Sarah Djebali, Hagen Tilgner, Gregory Guernec, David Martin, Angelika Merkel, David G Knowles,[...]. Genome Res 2012
22

MALAT-1, a novel noncoding RNA, and thymosin beta4 predict metastasis and survival in early-stage non-small cell lung cancer.
Ping Ji, Sven Diederichs, Wenbing Wang, Sebastian Böing, Ralf Metzger, Paul M Schneider, Nicola Tidow, Burkhard Brandt, Horst Buerger, Etmar Bulk,[...]. Oncogene 2003
20

Genome regulation by long noncoding RNAs.
John L Rinn, Howard Y Chang. Annu Rev Biochem 2012
19

Long noncoding RNA as modular scaffold of histone modification complexes.
Miao-Chih Tsai, Ohad Manor, Yue Wan, Nima Mosammaparast, Jordon K Wang, Fei Lan, Yang Shi, Eran Segal, Howard Y Chang. Science 2010
18

Landscape of transcription in human cells.
Sarah Djebali, Carrie A Davis, Angelika Merkel, Alex Dobin, Timo Lassmann, Ali Mortazavi, Andrea Tanzer, Julien Lagarde, Wei Lin, Felix Schlesinger,[...]. Nature 2012
17

Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis.
Rajnish A Gupta, Nilay Shah, Kevin C Wang, Jeewon Kim, Hugo M Horlings, David J Wong, Miao-Chih Tsai, Tiffany Hung, Pedram Argani, John L Rinn,[...]. Nature 2010
16

Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs.
John L Rinn, Michael Kertesz, Jordon K Wang, Sharon L Squazzo, Xiao Xu, Samantha A Brugmann, L Henry Goodnough, Jill A Helms, Peggy J Farnham, Eran Segal,[...]. Cell 2007
16

The noncoding RNA MALAT1 is a critical regulator of the metastasis phenotype of lung cancer cells.
Tony Gutschner, Monika Hämmerle, Moritz Eissmann, Jeff Hsu, Youngsoo Kim, Gene Hung, Alexey Revenko, Gayatri Arun, Marion Stentrup, Matthias Gross,[...]. Cancer Res 2013
14

The landscape of long noncoding RNAs in the human transcriptome.
Matthew K Iyer, Yashar S Niknafs, Rohit Malik, Udit Singhal, Anirban Sahu, Yasuyuki Hosono, Terrence R Barrette, John R Prensner, Joseph R Evans, Shuang Zhao,[...]. Nat Genet 2015
14

Molecular mechanisms of long noncoding RNAs.
Kevin C Wang, Howard Y Chang. Mol Cell 2011
14

The long noncoding RNAs NEAT1 and MALAT1 bind active chromatin sites.
Jason A West, Christopher P Davis, Hongjae Sunwoo, Matthew D Simon, Ruslan I Sadreyev, Peggy I Wang, Michael Y Tolstorukov, Robert E Kingston. Mol Cell 2014
389
14

Evolution and functions of long noncoding RNAs.
Chris P Ponting, Peter L Oliver, Wolf Reik. Cell 2009
14


LincRNA-p21 suppresses target mRNA translation.
Je-Hyun Yoon, Kotb Abdelmohsen, Subramanya Srikantan, Xiaoling Yang, Jennifer L Martindale, Supriyo De, Maite Huarte, Ming Zhan, Kevin G Becker, Myriam Gorospe. Mol Cell 2012
676
13

An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles.
Christine M Clemson, John N Hutchinson, Sergio A Sara, Alexander W Ensminger, Archa H Fox, Andrew Chess, Jeanne B Lawrence. Mol Cell 2009
923
13

Long non-coding RNAs: insights into functions.
Tim R Mercer, Marcel E Dinger, John S Mattick. Nat Rev Genet 2009
12

Gene regulation by long non-coding RNAs and its biological functions.
Luisa Statello, Chun-Jie Guo, Ling-Ling Chen, Maite Huarte. Nat Rev Mol Cell Biol 2021
506
12

Molecular interplay of the noncoding RNA ANRIL and methylated histone H3 lysine 27 by polycomb CBX7 in transcriptional silencing of INK4a.
Kyoko L Yap, Side Li, Ana M Muñoz-Cabello, Selina Raguz, Lei Zeng, Shiraz Mujtaba, Jesús Gil, Martin J Walsh, Ming-Ming Zhou. Mol Cell 2010
989
11

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses.
Moran N Cabili, Cole Trapnell, Loyal Goff, Magdalena Koziol, Barbara Tazon-Vega, Aviv Regev, John L Rinn. Genes Dev 2011
11

The Xist lncRNA interacts directly with SHARP to silence transcription through HDAC3.
Colleen A McHugh, Chun-Kan Chen, Amy Chow, Christine F Surka, Christina Tran, Patrick McDonel, Amy Pandya-Jones, Mario Blanco, Christina Burghard, Annie Moradian,[...]. Nature 2015
669
11

Systematic discovery of Xist RNA binding proteins.
Ci Chu, Qiangfeng Cliff Zhang, Simão Teixeira da Rocha, Ryan A Flynn, Maheetha Bharadwaj, J Mauro Calabrese, Terry Magnuson, Edith Heard, Howard Y Chang. Cell 2015
611
11

A screen for nuclear transcripts identifies two linked noncoding RNAs associated with SC35 splicing domains.
John N Hutchinson, Alexander W Ensminger, Christine M Clemson, Christopher R Lynch, Jeanne B Lawrence, Andrew Chess. BMC Genomics 2007
652
11

Hallmarks of cancer: the next generation.
Douglas Hanahan, Robert A Weinberg. Cell 2011
10

Noncoding RNA gas5 is a growth arrest- and starvation-associated repressor of the glucocorticoid receptor.
Tomoshige Kino, Darrell E Hurt, Takamasa Ichijo, Nancy Nader, George P Chrousos. Sci Signal 2010
869
10


Splicing regulation by long noncoding RNAs.
Natali Romero-Barrios, Maria Florencia Legascue, Moussa Benhamed, Federico Ariel, Martin Crespi. Nucleic Acids Res 2018
122
10

Long Noncoding RNAs in Cancer Pathways.
Adam M Schmitt, Howard Y Chang. Cancer Cell 2016
10

Unique features of long non-coding RNA biogenesis and function.
Jeffrey J Quinn, Howard Y Chang. Nat Rev Genet 2016
10

Global cancer statistics 2018: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries.
Freddie Bray, Jacques Ferlay, Isabelle Soerjomataram, Rebecca L Siegel, Lindsey A Torre, Ahmedin Jemal. CA Cancer J Clin 2018
10

A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression.
Kevin C Wang, Yul W Yang, Bo Liu, Amartya Sanyal, Ryan Corces-Zimmerman, Yong Chen, Bryan R Lajoie, Angeline Protacio, Ryan A Flynn, Rajnish A Gupta,[...]. Nature 2011
9

A gene from the region of the human X inactivation centre is expressed exclusively from the inactive X chromosome.
C J Brown, A Ballabio, J L Rupert, R G Lafreniere, M Grompe, R Tonlorenzi, H F Willard. Nature 1991
9

The human XIST gene: analysis of a 17 kb inactive X-specific RNA that contains conserved repeats and is highly localized within the nucleus.
C J Brown, B D Hendrich, J L Rupert, R G Lafrenière, Y Xing, J Lawrence, H F Willard. Cell 1992
952
9

A ceRNA hypothesis: the Rosetta Stone of a hidden RNA language?
Leonardo Salmena, Laura Poliseno, Yvonne Tay, Lev Kats, Pier Paolo Pandolfi. Cell 2011
9

A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response.
Maite Huarte, Mitchell Guttman, David Feldser, Manuel Garber, Magdalena J Koziol, Daniela Kenzelmann-Broz, Ahmad M Khalil, Or Zuk, Ido Amit, Michal Rabani,[...]. Cell 2010
9

A long nuclear-retained non-coding RNA regulates synaptogenesis by modulating gene expression.
Delphine Bernard, Kannanganattu V Prasanth, Vidisha Tripathi, Sabrina Colasse, Tetsuya Nakamura, Zhenyu Xuan, Michael Q Zhang, Frédéric Sedel, Laurent Jourdren, Fanny Coulpier,[...]. EMBO J 2010
501
9

Long noncoding RNA MALAT1 controls cell cycle progression by regulating the expression of oncogenic transcription factor B-MYB.
Vidisha Tripathi, Zhen Shen, Arindam Chakraborty, Sumanprava Giri, Susan M Freier, Xiaolin Wu, Yongqing Zhang, Myriam Gorospe, Supriya G Prasanth, Ashish Lal,[...]. PLoS Genet 2013
500
9

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals.
Mitchell Guttman, Ido Amit, Manuel Garber, Courtney French, Michael F Lin, David Feldser, Maite Huarte, Or Zuk, Bryce W Carey, John P Cassady,[...]. Nature 2009
9

Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters.
Tiffany Hung, Yulei Wang, Michael F Lin, Ashley K Koegel, Yojiro Kotake, Gavin D Grant, Hugo M Horlings, Nilay Shah, Christopher Umbricht, Pei Wang,[...]. Nat Genet 2011
835
9

Natural RNA circles function as efficient microRNA sponges.
Thomas B Hansen, Trine I Jensen, Bettina H Clausen, Jesper B Bramsen, Bente Finsen, Christian K Damgaard, Jørgen Kjems. Nature 2013
9

RNA-RNA interactions enable specific targeting of noncoding RNAs to nascent Pre-mRNAs and chromatin sites.
Jesse M Engreitz, Klara Sirokman, Patrick McDonel, Alexander A Shishkin, Christine Surka, Pamela Russell, Sharon R Grossman, Amy Y Chow, Mitchell Guttman, Eric S Lander. Cell 2014
296
9

ncRNA- and Pc2 methylation-dependent gene relocation between nuclear structures mediates gene activation programs.
Liuqing Yang, Chunru Lin, Wen Liu, Jie Zhang, Kenneth A Ohgi, Jonathan D Grinstein, Pieter C Dorrestein, Michael G Rosenfeld. Cell 2011
451
9

Nuclear speckles.
David L Spector, Angus I Lamond. Cold Spring Harb Perspect Biol 2011
456
9

A natural antisense transcript regulates Zeb2/Sip1 gene expression during Snail1-induced epithelial-mesenchymal transition.
Manuel Beltran, Isabel Puig, Cristina Peña, José Miguel García, Ana Belén Alvarez, Raúl Peña, Félix Bonilla, Antonio García de Herreros. Genes Dev 2008
470
9

The lncRNA Malat1 is dispensable for mouse development but its transcription plays a cis-regulatory role in the adult.
Bin Zhang, Gayatri Arun, Yuntao S Mao, Zsolt Lazar, Gene Hung, Gourab Bhattacharjee, Xiaokun Xiao, Carmen J Booth, Jie Wu, Chaolin Zhang,[...]. Cell Rep 2012
406
9

RNA maps reveal new RNA classes and a possible function for pervasive transcription.
Philipp Kapranov, Jill Cheng, Sujit Dike, David A Nix, Radharani Duttagupta, Aarron T Willingham, Peter F Stadler, Jana Hertel, Jörg Hackermüller, Ivo L Hofacker,[...]. Science 2007
9

Functional Domains of NEAT1 Architectural lncRNA Induce Paraspeckle Assembly through Phase Separation.
Tomohiro Yamazaki, Sylvie Souquere, Takeshi Chujo, Simon Kobelke, Yee Seng Chong, Archa H Fox, Charles S Bond, Shinichi Nakagawa, Gerard Pierron, Tetsuro Hirose. Mol Cell 2018
231
9

Long non-coding RNAs: new players in cell differentiation and development.
Alessandro Fatica, Irene Bozzoni. Nat Rev Genet 2014
8

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression.
Ahmad M Khalil, Mitchell Guttman, Maite Huarte, Manuel Garber, Arjun Raj, Dianali Rivea Morales, Kelly Thomas, Aviva Presser, Bradley E Bernstein, Alexander van Oudenaarden,[...]. Proc Natl Acad Sci U S A 2009
8

lincRNAs act in the circuitry controlling pluripotency and differentiation.
Mitchell Guttman, Julie Donaghey, Bryce W Carey, Manuel Garber, Jennifer K Grenier, Glen Munson, Geneva Young, Anne Bergstrom Lucas, Robert Ach, Laurakay Bruhn,[...]. Nature 2011
8

Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome.
Jing Zhao, Bryan K Sun, Jennifer A Erwin, Ji-Joon Song, Jeannie T Lee. Science 2008
8


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.