A citation-based method for searching scientific literature

Paulina H Wanrooij, Jay P Uhler, Tomas Simonsson, Maria Falkenberg, Claes M Gustafsson. Proc Natl Acad Sci U S A 2010
Times Cited: 107







List of co-cited articles
1307 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


A hybrid G-quadruplex structure formed between RNA and DNA explains the extraordinary stability of the mitochondrial R-loop.
Paulina H Wanrooij, Jay P Uhler, Yonghong Shi, Fredrik Westerlund, Maria Falkenberg, Claes M Gustafsson. Nucleic Acids Res 2012
91
39

Sequence and organization of the human mitochondrial genome.
S Anderson, A T Bankier, B G Barrell, M H de Bruijn, A R Coulson, J Drouin, I C Eperon, D P Nierlich, B A Roe, F Sanger,[...]. Nature 1981
24

Mitochondrial biology. Replication-transcription switch in human mitochondria.
Karen Agaronyan, Yaroslav I Morozov, Michael Anikin, Dmitry Temiakov. Science 2015
93
24


Conserved sequence box II directs transcription termination and primer formation in mitochondria.
Xuan Hoi Pham, Géraldine Farge, Yonghong Shi, Martina Gaspari, Claes M Gustafsson, Maria Falkenberg. J Biol Chem 2006
90
23

Prevalence of quadruplexes in the human genome.
Julian L Huppert, Shankar Balasubramanian. Nucleic Acids Res 2005
20

G-quadruplex RNA structure as a signal for neurite mRNA targeting.
Murugan Subramanian, Florence Rage, Ricardos Tabet, Eric Flatter, Jean-Louis Mandel, Hervé Moine. EMBO Rep 2011
149
19

Mitochondrial transcription factors B1 and B2 activate transcription of human mtDNA.
Maria Falkenberg, Martina Gaspari, Anja Rantanen, Aleksandra Trifunovic, Nils-Göran Larsson, Claes M Gustafsson. Nat Genet 2002
414
18

TEFM (c17orf42) is necessary for transcription of human mtDNA.
Michal Minczuk, Jiuya He, Anna M Duch, Thijs J Ettema, Aleksander Chlebowski, Karol Dzionek, Leo G J Nijtmans, Martijn A Huynen, Ian J Holt. Nucleic Acids Res 2011
97
18

Mitochondrial RNA polymerase is needed for activation of the origin of light-strand DNA replication.
Javier Miralles Fusté, Sjoerd Wanrooij, Elisabeth Jemt, Caroline E Granycome, Tricia J Cluett, Yonghong Shi, Neli Atanassova, Ian J Holt, Claes M Gustafsson, Maria Falkenberg. Mol Cell 2010
120
17

TEFM is a potent stimulator of mitochondrial transcription elongation in vitro.
Viktor Posse, Saba Shahzad, Maria Falkenberg, B Martin Hällberg, Claes M Gustafsson. Nucleic Acids Res 2015
47
36

An RNA G-quadruplex in the 5' UTR of the NRAS proto-oncogene modulates translation.
Sunita Kumari, Anthony Bugaut, Julian L Huppert, Shankar Balasubramanian. Nat Chem Biol 2007
498
16

Quadruplex DNA: sequence, topology and structure.
Sarah Burge, Gary N Parkinson, Pascale Hazel, Alan K Todd, Stephen Neidle. Nucleic Acids Res 2006
16

G-quadruplexes: the beginning and end of UTRs.
Julian Leon Huppert, Anthony Bugaut, Sunita Kumari, Shankar Balasubramanian. Nucleic Acids Res 2008
272
15

Human mitochondrial RNA polymerase primes lagging-strand DNA synthesis in vitro.
Sjoerd Wanrooij, Javier Miralles Fusté, Géraldine Farge, Yonghong Shi, Claes M Gustafsson, Maria Falkenberg. Proc Natl Acad Sci U S A 2008
116
15

5'-UTR RNA G-quadruplexes: translation regulation and targeting.
Anthony Bugaut, Shankar Balasubramanian. Nucleic Acids Res 2012
392
15

Quantitative visualization of DNA G-quadruplex structures in human cells.
Giulia Biffi, David Tannahill, John McCafferty, Shankar Balasubramanian. Nat Chem 2013
15

An RNA G-quadruplex is essential for cap-independent translation initiation in human VEGF IRES.
Mark J Morris, Yoichi Negishi, Cathy Pazsint, Joseph D Schonhoft, Soumitra Basu. J Am Chem Soc 2010
135
14

Helix formation by guanylic acid.
M GELLERT, M N LIPSETT, D R DAVIES. Proc Natl Acad Sci U S A 1962
989
14

G-quadruplex structures in TP53 intron 3: role in alternative splicing and in production of p53 mRNA isoforms.
Virginie Marcel, Phong L T Tran, Charlotte Sagne, Ghyslaine Martel-Planche, Laurence Vaslin, Marie-Paule Teulade-Fichou, Janet Hall, Jean-Louis Mergny, Pierre Hainaut, Eric Van Dyck. Carcinogenesis 2011
137
14



The human mitochondrial transcriptome.
Tim R Mercer, Shane Neph, Marcel E Dinger, Joanna Crawford, Martin A Smith, Anne-Marie J Shearwood, Eric Haugen, Cameron P Bracken, Oliver Rackham, John A Stamatoyannopoulos,[...]. Cell 2011
455
13

DNA replication and transcription in mammalian mitochondria.
Maria Falkenberg, Nils-Göran Larsson, Claes M Gustafsson. Annu Rev Biochem 2007
439
13

A G-quadruplex structure within the 5'-UTR of TRF2 mRNA represses translation in human cells.
Dennis Gomez, Aurore Guédin, Jean-Louis Mergny, Bernard Salles, Jean-François Riou, Marie-Paule Teulade-Fichou, Patrick Calsou. Nucleic Acids Res 2010
127
13

QGRS Mapper: a web-based server for predicting G-quadruplexes in nucleotide sequences.
Oleg Kikin, Lawrence D'Antonio, Paramjeet S Bagga. Nucleic Acids Res 2006
450
13

Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription.
Adam Siddiqui-Jain, Cory L Grand, David J Bearss, Laurence H Hurley. Proc Natl Acad Sci U S A 2002
13

G-quadruplexes in promoters throughout the human genome.
Julian L Huppert, Shankar Balasubramanian. Nucleic Acids Res 2007
807
13

G-quadruplexes in RNA biology.
Stefania Millevoi, Hervé Moine, Stéphan Vagner. Wiley Interdiscip Rev RNA 2012
184
13

DNA secondary structures: stability and function of G-quadruplex structures.
Matthew L Bochman, Katrin Paeschke, Virginia A Zakian. Nat Rev Genet 2012
716
13

A competitive formation of DNA:RNA hybrid G-quadruplex is responsible to the mitochondrial transcription termination at the DNA replication priming site.
Ke-wei Zheng, Ren-yi Wu, Yi-de He, Shan Xiao, Jia-yu Zhang, Jia-quan Liu, Yu-hua Hao, Zheng Tan. Nucleic Acids Res 2014
38
34

The mitochondrial transcription factor TFAM coordinates the assembly of multiple DNA molecules into nucleoid-like structures.
Brett A Kaufman, Nela Durisic, Jeffrey M Mativetsky, Santiago Costantino, Mark A Hancock, Peter Grutter, Eric A Shoubridge. Mol Biol Cell 2007
254
12

5'-UTR G-quadruplex structures acting as translational repressors.
Jean-Denis Beaudoin, Jean-Pierre Perreault. Nucleic Acids Res 2010
140
12





Super-resolution microscopy reveals that mammalian mitochondrial nucleoids have a uniform size and frequently contain a single copy of mtDNA.
Christian Kukat, Christian A Wurm, Henrik Spåhr, Maria Falkenberg, Nils-Göran Larsson, Stefan Jakobs. Proc Natl Acad Sci U S A 2011
287
12

Cross-strand binding of TFAM to a single mtDNA molecule forms the mitochondrial nucleoid.
Christian Kukat, Karen M Davies, Christian A Wurm, Henrik Spåhr, Nina A Bonekamp, Inge Kühl, Friederike Joos, Paola Loguercio Polosa, Chan Bae Park, Viktor Posse,[...]. Proc Natl Acad Sci U S A 2015
161
12

Maintenance and Expression of Mammalian Mitochondrial DNA.
Claes M Gustafsson, Maria Falkenberg, Nils-Göran Larsson. Annu Rev Biochem 2016
250
12

TFB2 is a transient component of the catalytic site of the human mitochondrial RNA polymerase.
Marina Sologub, Dmitry Litonin, Michael Anikin, Arkady Mustaev, Dmitry Temiakov. Cell 2009
89
12

Human mitochondrial transcription revisited: only TFAM and TFB2M are required for transcription of the mitochondrial genes in vitro.
Dmitry Litonin, Marina Sologub, Yonghong Shi, Maria Savkina, Michael Anikin, Maria Falkenberg, Claes M Gustafsson, Dmitry Temiakov. J Biol Chem 2010
121
11

Highly prevalent putative quadruplex sequence motifs in human DNA.
Alan K Todd, Matthew Johnston, Stephen Neidle. Nucleic Acids Res 2005
660
11

Telomerase downregulation induced by the G-quadruplex ligand 12459 in A549 cells is mediated by hTERT RNA alternative splicing.
Dennis Gomez, Thibault Lemarteleur, Laurent Lacroix, Patrick Mailliet, Jean-Louis Mergny, Jean-François Riou. Nucleic Acids Res 2004
158
11


Visualization and selective chemical targeting of RNA G-quadruplex structures in the cytoplasm of human cells.
Giulia Biffi, Marco Di Antonio, David Tannahill, Shankar Balasubramanian. Nat Chem 2014
323
11

Association of G-quadruplex forming sequences with human mtDNA deletion breakpoints.
Dawei W Dong, Filipe Pereira, Steven P Barrett, Jill E Kolesar, Kajia Cao, Joana Damas, Liliya A Yatsunyk, F Brad Johnson, Brett A Kaufman. BMC Genomics 2014
57
19

High-throughput sequencing of DNA G-quadruplex structures in the human genome.
Vicki S Chambers, Giovanni Marsico, Jonathan M Boutell, Marco Di Antonio, Geoffrey P Smith, Shankar Balasubramanian. Nat Biotechnol 2015
512
11

Structural Basis of Mitochondrial Transcription Initiation.
Hauke S Hillen, Yaroslav I Morozov, Azadeh Sarfallah, Dmitry Temiakov, Patrick Cramer. Cell 2017
57
19

Mechanism of Transcription Anti-termination in Human Mitochondria.
Hauke S Hillen, Andrey V Parshin, Karen Agaronyan, Yaroslav I Morozov, James J Graber, Aleksandar Chernev, Kathrin Schwinghammer, Henning Urlaub, Michael Anikin, Patrick Cramer,[...]. Cell 2017
36
30


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.