A citation-based method for searching scientific literature

Elena Papaleo, Gaetano Invernizzi. Curr Comput Aided Drug Des 2011
Times Cited: 10







List of co-cited articles
82 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Pathogenic and non-pathogenic polyglutamine tracts have similar structural properties: towards a length-dependent toxicity gradient.
Fabrice A C Klein, Annalisa Pastore, Laura Masino, Gabrielle Zeder-Lutz, Hélène Nierengarten, Mustapha Oulad-Abdelghani, Danièle Altschuh, Jean-Louis Mandel, Yvon Trottier. J Mol Biol 2007
75
40

Huntingtin spheroids and protofibrils as precursors in polyglutamine fibrilization.
Michelle A Poirier, Huilin Li, Jed Macosko, Shuowei Cai, Mario Amzel, Christopher A Ross. J Biol Chem 2002
277
30

Structure of the cross-beta spine of amyloid-like fibrils.
Rebecca Nelson, Michael R Sawaya, Melinda Balbirnie, Anders Ø Madsen, Christian Riekel, Robert Grothe, David Eisenberg. Nature 2005
30


Structural properties of polyglutamine aggregates investigated via molecular dynamics simulations.
Giulia Rossetti, Alessandra Magistrato, Annalisa Pastore, Francesca Persichetti, Paolo Carloni. J Phys Chem B 2008
17
30

Solution structure of polyglutamine tracts in GST-polyglutamine fusion proteins.
Laura Masino, Geoff Kelly, Kevin Leonard, Yvon Trottier, Annalisa Pastore. FEBS Lett 2002
124
30

Glutamine repeats as polar zippers: their possible role in inherited neurodegenerative diseases.
M F Perutz, T Johnson, M Suzuki, J T Finch. Proc Natl Acad Sci U S A 1994
839
30

Polyglutamine induced misfolding of huntingtin exon1 is modulated by the flanking sequences.
Vinal V Lakhani, Feng Ding, Nikolay V Dokholyan. PLoS Comput Biol 2010
73
30

Evolution and function of CAG/polyglutamine repeats in protein-protein interaction networks.
Martin H Schaefer, Erich E Wanker, Miguel A Andrade-Navarro. Nucleic Acids Res 2012
115
30


Critical nucleus size for disease-related polyglutamine aggregation is repeat-length dependent.
Karunakar Kar, Murali Jayaraman, Bankanidhi Sahoo, Ravindra Kodali, Ronald Wetzel. Nat Struct Mol Biol 2011
144
30

Inclusion body formation reduces levels of mutant huntingtin and the risk of neuronal death.
Montserrat Arrasate, Siddhartha Mitra, Erik S Schweitzer, Mark R Segal, Steven Finkbeiner. Nature 2004
30



Essential role of coiled coils for aggregation and activity of Q/N-rich prions and PolyQ proteins.
Ferdinando Fiumara, Luana Fioriti, Eric R Kandel, Wayne A Hendrickson. Cell 2010
161
30


Secondary structure of Huntingtin amino-terminal region.
Mee Whi Kim, Yogarany Chelliah, Sang Woo Kim, Zbyszek Otwinowski, Ilya Bezprozvanny. Structure 2009
179
30

Oligoproline effects on polyglutamine conformation and aggregation.
Anusri Bhattacharyya, Ashwani K Thakur, Veronique M Chellgren, Geetha Thiagarajan, Angela D Williams, Brian W Chellgren, Trevor P Creamer, Ronald Wetzel. J Mol Biol 2006
188
30

VMD: visual molecular dynamics.
W Humphrey, A Dalke, K Schulten. J Mol Graph 1996
20

The Amber biomolecular simulation programs.
David A Case, Thomas E Cheatham, Tom Darden, Holger Gohlke, Ray Luo, Kenneth M Merz, Alexey Onufriev, Carlos Simmerling, Bing Wang, Robert J Woods. J Comput Chem 2005
20

Polyglutamine diseases: where does toxicity come from? what is toxicity? where are we going?
Toshiaki Takahashi, Shinichi Katada, Osamu Onodera. J Mol Cell Biol 2010
104
20

A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations.
Yong Duan, Chun Wu, Shibasish Chowdhury, Mathew C Lee, Guoming Xiong, Wei Zhang, Rong Yang, Piotr Cieplak, Ray Luo, Taisung Lee,[...]. J Comput Chem 2003
20

A biomolecular force field based on the free enthalpy of hydration and solvation: the GROMOS force-field parameter sets 53A5 and 53A6.
Chris Oostenbrink, Alessandra Villa, Alan E Mark, Wilfred F van Gunsteren. J Comput Chem 2004
20

Hydrogen Bonding Cooperativity in polyQ β-Sheets from First Principle Calculations.
Giulia Rossetti, Alessandra Magistrato, Annalisa Pastore, Paolo Carloni. J Chem Theory Comput 2010
13
20


Glutamine repeats and neurodegeneration.
H Y Zoghbi, H T Orr. Annu Rev Neurosci 2000
961
20

Caspase cleavage of gene products associated with triplet expansion disorders generates truncated fragments containing the polyglutamine tract.
C L Wellington, L M Ellerby, A S Hackam, R L Margolis, M A Trifiro, R Singaraja, K McCutcheon, G S Salvesen, S S Propp, M Bromm,[...]. J Biol Chem 1998
422
20

The DNAJB6 and DNAJB8 protein chaperones prevent intracellular aggregation of polyglutamine peptides.
Judith Gillis, Sabine Schipper-Krom, Katrin Juenemann, Anna Gruber, Silvia Coolen, Rian van den Nieuwendijk, Henk van Veen, Hermen Overkleeft, Joachim Goedhart, Harm H Kampinga,[...]. J Biol Chem 2013
70
20


Polyglutamine gene function and dysfunction in the ageing brain.
Sarah Hands, Christopher Sinadinos, Andreas Wyttenbach. Biochim Biophys Acta 2008
40
20

Absence of behavioral abnormalities and neurodegeneration in vivo despite widespread neuronal huntingtin inclusions.
Elizabeth J Slow, Rona K Graham, Alexander P Osmand, Rebecca S Devon, Ge Lu, Yu Deng, Jacqui Pearson, Kuljeet Vaid, Nagat Bissada, Ronald Wetzel,[...]. Proc Natl Acad Sci U S A 2005
197
20

Multi-domain misfolding: understanding the aggregation pathway of polyglutamine proteins.
Helen M Saunders, Stephen P Bottomley. Protein Eng Des Sel 2009
59
20

Ataxin-1 nuclear localization and aggregation: role in polyglutamine-induced disease in SCA1 transgenic mice.
I A Klement, P J Skinner, M D Kaytor, H Yi, S M Hersch, H B Clark, H Y Zoghbi, H T Orr. Cell 1998
799
20


Huntington's disease: the challenge for cell biologists.
A J Tobin, E R Signer. Trends Cell Biol 2000
173
20





Flanking domain stability modulates the aggregation kinetics of a polyglutamine disease protein.
Helen M Saunders, Dimitri Gilis, Marianne Rooman, Yves Dehouck, Amy L Robertson, Stephen P Bottomley. Protein Sci 2011
31
20

Polyglutamine fibrillogenesis: the pathway unfolds.
Christopher A Ross, Michelle A Poirier, Erich E Wanker, Mario Amzel. Proc Natl Acad Sci U S A 2003
99
20



Functional insights from the distribution and role of homopeptide repeat-containing proteins.
Noel G Faux, Stephen P Bottomley, Arthur M Lesk, James A Irving, John R Morrison, Maria Garcia de la Banda, James C Whisstock. Genome Res 2005
141
20

Polyglutamine is not all: the functional role of the AXH domain in the ataxin-1 protein.
Cesira de Chiara, Rajesh P Menon, Fabrizio Dal Piaz, Lesley Calder, Annalisa Pastore. J Mol Biol 2005
62
20

The structural impact of a polyglutamine tract is location-dependent.
Amy L Robertson, James Horne, Andrew M Ellisdon, Bronwen Thomas, Martin J Scanlon, Stephen P Bottomley. Biophys J 2008
28
20

Aggregation of polyQ-extended proteins is promoted by interaction with their natural coiled-coil partners.
Spyros Petrakis, Martin H Schaefer, Erich E Wanker, Miguel A Andrade-Navarro. Bioessays 2013
24
20

Consequences of poly-glutamine repeat length for the conformation and folding of the androgen receptor amino-terminal domain.
Philippa Davies, Kate Watt, Sharon M Kelly, Caroline Clark, Nicholas C Price, Iain J McEwan. J Mol Endocrinol 2008
41
20

Kinetically competing huntingtin aggregation pathways control amyloid polymorphism and properties.
Murali Jayaraman, Rakesh Mishra, Ravindra Kodali, Ashwani K Thakur, Leonardus M I Koharudin, Angela M Gronenborn, Ronald Wetzel. Biochemistry 2012
50
20

Serines 13 and 16 are critical determinants of full-length human mutant huntingtin induced disease pathogenesis in HD mice.
Xiaofeng Gu, Erin R Greiner, Rakesh Mishra, Ravindra Kodali, Alex Osmand, Steven Finkbeiner, Joan S Steffan, Leslie Michels Thompson, Ronald Wetzel, X William Yang. Neuron 2009
216
20


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.