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Times Cited: 640
Times Cited
Times Co-cited
Similarity
Absolute quantification of somatic DNA alterations in human cancer.
Scott L Carter, Kristian Cibulskis, Elena Helman, Aaron McKenna, Hui Shen, Travis Zack, Peter W Laird, Robert C Onofrio, Wendy Winckler, Barbara A Weir,[...]. Nat Biotechnol 2012
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The Sequence Alignment/Map format and SAMtools.
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Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
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Fast and accurate short read alignment with Burrows-Wheeler transform.
Heng Li, Richard Durbin. Bioinformatics 2009
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GISTIC2.0 facilitates sensitive and confident localization of the targets of focal somatic copy-number alteration in human cancers.
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Craig H Mermel, Steven E Schumacher, Barbara Hill, Matthew L Meyerson, Rameen Beroukhim, Gad Getz. Genome Biol 2011
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The repertoire of mutational signatures in human cancer.
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The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.
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Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.
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Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples.
Kristian Cibulskis, Michael S Lawrence, Scott L Carter, Andrey Sivachenko, David Jaffe, Carrie Sougnez, Stacey Gabriel, Matthew Meyerson, Eric S Lander, Gad Getz. Nat Biotechnol 2013
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Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
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ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data.
Kai Wang, Mingyao Li, Hakon Hakonarson. Nucleic Acids Res 2010
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cgpCaVEManWrapper: Simple Execution of CaVEMan in Order to Detect Somatic Single Nucleotide Variants in NGS Data.
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PyClone: statistical inference of clonal population structure in cancer.
Andrew Roth, Jaswinder Khattra, Damian Yap, Adrian Wan, Emma Laks, Justina Biele, Gavin Ha, Samuel Aparicio, Alexandre Bouchard-Côté, Sohrab P Shah. Nat Methods 2014
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The life history of 21 breast cancers.
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FACETS: allele-specific copy number and clonal heterogeneity analysis tool for high-throughput DNA sequencing.
Ronglai Shen, Venkatraman E Seshan. Nucleic Acids Res 2016
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Copynumber: Efficient algorithms for single- and multi-track copy number segmentation.
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The evolutionary history of 2,658 cancers.
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The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data.
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Clonal Decomposition and DNA Replication States Defined by Scaled Single-Cell Genome Sequencing.
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Genomic and Functional Approaches to Understanding Cancer Aneuploidy.
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Somatic mutant clones colonize the human esophagus with age.
Iñigo Martincorena, Joanna C Fowler, Agnieszka Wabik, Andrew R J Lawson, Federico Abascal, Michael W J Hall, Alex Cagan, Kasumi Murai, Krishnaa Mahbubani, Michael R Stratton,[...]. Science 2018
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The mutational landscape of normal human endometrial epithelium.
Luiza Moore, Daniel Leongamornlert, Tim H H Coorens, Mathijs A Sanders, Peter Ellis, Stefan C Dentro, Kevin J Dawson, Tim Butler, Raheleh Rahbari, Thomas J Mitchell,[...]. Nature 2020
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The mutational constraint spectrum quantified from variation in 141,456 humans.
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DeconstructSigs: delineating mutational processes in single tumors distinguishes DNA repair deficiencies and patterns of carcinoma evolution.
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Systematic pan-cancer analysis of tumour purity.
Dvir Aran, Marina Sirota, Atul J Butte. Nat Commun 2015
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The Ensembl Variant Effect Predictor.
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Allele-Specific HLA Loss and Immune Escape in Lung Cancer Evolution.
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VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing.
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Tumor aneuploidy correlates with markers of immune evasion and with reduced response to immunotherapy.
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Inferring tumour purity and stromal and immune cell admixture from expression data.
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Tumor evolution. High burden and pervasive positive selection of somatic mutations in normal human skin.
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HRDetect is a predictor of BRCA1 and BRCA2 deficiency based on mutational signatures.
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BEDTools: a flexible suite of utilities for comparing genomic features.
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Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.