A citation-based method for searching scientific literature

Anna Portela, Manel Esteller. Nat Biotechnol 2010
Times Cited: 1537







List of co-cited articles
501 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Regulation of chromatin by histone modifications.
Andrew J Bannister, Tony Kouzarides. Cell Res 2011
13

DNA methylation and its basic function.
Lisa D Moore, Thuc Le, Guoping Fan. Neuropsychopharmacology 2013
11

Translating the histone code.
T Jenuwein, C D Allis. Science 2001
10



Loss of acetylation at Lys16 and trimethylation at Lys20 of histone H4 is a common hallmark of human cancer.
Mario F Fraga, Esteban Ballestar, Ana Villar-Garea, Manuel Boix-Chornet, Jesus Espada, Gunnar Schotta, Tiziana Bonaldi, Claire Haydon, Santiago Ropero, Kevin Petrie,[...]. Nat Genet 2005
6

The language of covalent histone modifications.
B D Strahl, C D Allis. Nature 2000
6

The sva package for removing batch effects and other unwanted variation in high-throughput experiments.
Jeffrey T Leek, W Evan Johnson, Hilary S Parker, Andrew E Jaffe, John D Storey. Bioinformatics 2012
5

Global histone modifications in breast cancer correlate with tumor phenotypes, prognostic factors, and patient outcome.
Somaia E Elsheikh, Andrew R Green, Emad A Rakha, Des G Powe, Rabab A Ahmed, Hilary M Collins, Daniele Soria, Jonathan M Garibaldi, Claire E Paish, Amr A Ammar,[...]. Cancer Res 2009
266
5


Histone Modifications and Cancer.
James E Audia, Robert M Campbell. Cold Spring Harb Perspect Biol 2016
236
5

Hallmarks of cancer: the next generation.
Douglas Hanahan, Robert A Weinberg. Cell 2011
5

The molecular hallmarks of epigenetic control.
C David Allis, Thomas Jenuwein. Nat Rev Genet 2016
948
5

Non-coding RNAs as regulators in epigenetics (Review).
Jian-Wei Wei, Kai Huang, Chao Yang, Chun-Sheng Kang. Oncol Rep 2017
205
5


Cancer epigenetics: from mechanism to therapy.
Mark A Dawson, Tony Kouzarides. Cell 2012
5

clusterProfiler: an R package for comparing biological themes among gene clusters.
Guangchuang Yu, Li-Gen Wang, Yanyan Han, Qing-Yu He. OMICS 2012
4

Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine.
Shinsuke Ito, Li Shen, Qing Dai, Susan C Wu, Leonard B Collins, James A Swenberg, Chuan He, Yi Zhang. Science 2011
4


DNA methylation and human disease.
Keith D Robertson. Nat Rev Genet 2005
4

Gene body methylation can alter gene expression and is a therapeutic target in cancer.
Xiaojing Yang, Han Han, Daniel D De Carvalho, Fides D Lay, Peter A Jones, Gangning Liang. Cancer Cell 2014
588
4

Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1.
Mamta Tahiliani, Kian Peng Koh, Yinghua Shen, William A Pastor, Hozefa Bandukwala, Yevgeny Brudno, Suneet Agarwal, Lakshminarayan M Iyer, David R Liu, L Aravind,[...]. Science 2009
4

Global histone modification patterns predict risk of prostate cancer recurrence.
David B Seligson, Steve Horvath, Tao Shi, Hong Yu, Sheila Tze, Michael Grunstein, Siavash K Kurdistani. Nature 2005
716
4

Epigenetics: a landscape takes shape.
Aaron D Goldberg, C David Allis, Emily Bernstein. Cell 2007
4

Induction of tumors in mice by genomic hypomethylation.
François Gaudet, J Graeme Hodgson, Amir Eden, Laurie Jackson-Grusby, Jessica Dausman, Joe W Gray, Heinrich Leonhardt, Rudolf Jaenisch. Science 2003
4

Histone core modifications regulating nucleosome structure and dynamics.
Peter Tessarz, Tony Kouzarides. Nat Rev Mol Cell Biol 2014
489
4

Cell-free DNA Comprises an In Vivo Nucleosome Footprint that Informs Its Tissues-Of-Origin.
Matthew W Snyder, Martin Kircher, Andrew J Hill, Riza M Daza, Jay Shendure. Cell 2016
530
4

Global levels of histone modifications predict prognosis in different cancers.
David B Seligson, Steve Horvath, Matthew A McBrian, Vei Mah, Hong Yu, Sheila Tze, Qun Wang, David Chia, Lee Goodglick, Siavash K Kurdistani. Am J Pathol 2009
332
4

Perceptions of epigenetics.
Adrian Bird. Nature 2007
3

Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays.
Martin J Aryee, Andrew E Jaffe, Hector Corrada-Bravo, Christine Ladd-Acosta, Andrew P Feinberg, Kasper D Hansen, Rafael A Irizarry. Bioinformatics 2014
3

DNA methylation arrays as surrogate measures of cell mixture distribution.
Eugene Andres Houseman, William P Accomando, Devin C Koestler, Brock C Christensen, Carmen J Marsit, Heather H Nelson, John K Wiencke, Karl T Kelsey. BMC Bioinformatics 2012
3

A data-driven approach to preprocessing Illumina 450K methylation array data.
Ruth Pidsley, Chloe C Y Wong, Manuela Volta, Katie Lunnon, Jonathan Mill, Leonard C Schalkwyk. BMC Genomics 2013
516
3

Clinical epigenetics: seizing opportunities for translation.
María Berdasco, Manel Esteller. Nat Rev Genet 2019
168
3


DNA hypomethylation and human diseases.
Ann S Wilson, Barbara E Power, Peter L Molloy. Biochim Biophys Acta 2007
531
3


CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing.
Sanjeev Shukla, Ersen Kavak, Melissa Gregory, Masahiko Imashimizu, Bojan Shutinoski, Mikhail Kashlev, Philipp Oberdoerffer, Rickard Sandberg, Shalini Oberdoerffer. Nature 2011
632
3



The hallmarks of cancer.
D Hanahan, R A Weinberg. Cell 2000
3

Prognostic value of CpG island methylator phenotype among colorectal cancer patients: a systematic review and meta-analysis.
Y Y Juo, F M Johnston, D Y Zhang, H H Juo, H Wang, E P Pappou, T Yu, H Easwaran, S Baylin, M van Engeland,[...]. Ann Oncol 2014
110
3



Functions of bromodomain-containing proteins and their roles in homeostasis and cancer.
Takao Fujisawa, Panagis Filippakopoulos. Nat Rev Mol Cell Biol 2017
230
3

The roles of histone variants in fine-tuning chromatin organization and function.
Sara Martire, Laura A Banaszynski. Nat Rev Mol Cell Biol 2020
53
5

Selective inhibition of BET bromodomains.
Panagis Filippakopoulos, Jun Qi, Sarah Picaud, Yao Shen, William B Smith, Oleg Fedorov, Elizabeth M Morse, Tracey Keates, Tyler T Hickman, Ildiko Felletar,[...]. Nature 2010
3


Structure and acetyl-lysine recognition of the bromodomain.
S Mujtaba, L Zeng, M-M Zhou. Oncogene 2007
266
3

Histone Variant H2A.Z.2 Mediates Proliferation and Drug Sensitivity of Malignant Melanoma.
Chiara Vardabasso, Alexandre Gaspar-Maia, Dan Hasson, Sebastian Pünzeler, David Valle-Garcia, Tobias Straub, Eva C Keilhauer, Thomas Strub, Joanna Dong, Taniya Panda,[...]. Mol Cell 2015
109
3

Implication of sperm RNAs in transgenerational inheritance of the effects of early trauma in mice.
Katharina Gapp, Ali Jawaid, Peter Sarkies, Johannes Bohacek, Pawel Pelczar, Julien Prados, Laurent Farinelli, Eric Miska, Isabelle M Mansuy. Nat Neurosci 2014
596
3


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.