A citation-based method for searching scientific literature

Koichi Kawakami, Gembu Abe, Tokuko Asada, Kazuhide Asakawa, Ryuichi Fukuda, Aki Ito, Pradeep Lal, Naoko Mouri, Akira Muto, Maximilliano L Suster, Hitomi Takakubo, Akihiro Urasaki, Hironori Wada, Mikio Yoshida. BMC Dev Biol 2010
Times Cited: 99







List of co-cited articles
1064 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Genetic dissection of neural circuits by Tol2 transposon-mediated Gal4 gene and enhancer trapping in zebrafish.
Kazuhide Asakawa, Maximiliano L Suster, Kanta Mizusawa, Saori Nagayoshi, Tomoya Kotani, Akihiro Urasaki, Yasuyuki Kishimoto, Masahiko Hibi, Koichi Kawakami. Proc Natl Acad Sci U S A 2008
345
48

Targeting neural circuitry in zebrafish using GAL4 enhancer trapping.
Ethan K Scott, Lindsay Mason, Aristides B Arrenberg, Limor Ziv, Nathan J Gosse, Tong Xiao, Neil C Chi, Kazuhide Asakawa, Koichi Kawakami, Herwig Baier. Nat Methods 2007
265
29

The Tol2kit: a multisite gateway-based construction kit for Tol2 transposon transgenesis constructs.
Kristen M Kwan, Esther Fujimoto, Clemens Grabher, Benjamin D Mangum, Melissa E Hardy, Douglas S Campbell, John M Parant, H Joseph Yost, John P Kanki, Chi-Bin Chien. Dev Dyn 2007
24

A transposon-mediated gene trap approach identifies developmentally regulated genes in zebrafish.
Koichi Kawakami, Hisashi Takeda, Noriko Kawakami, Makoto Kobayashi, Naoto Matsuda, Masayoshi Mishina. Dev Cell 2004
587
23

Stages of embryonic development of the zebrafish.
C B Kimmel, W W Ballard, S R Kimmel, B Ullmann, T F Schilling. Dev Dyn 1995
19

Efficient genome editing in zebrafish using a CRISPR-Cas system.
Woong Y Hwang, Yanfang Fu, Deepak Reyon, Morgan L Maeder, Shengdar Q Tsai, Jeffry D Sander, Randall T Peterson, J-R Joanna Yeh, J Keith Joung. Nat Biotechnol 2013
18

A genetic screen for mutations affecting embryogenesis in zebrafish.
W Driever, L Solnica-Krezel, A F Schier, S C Neuhauss, J Malicki, D L Stemple, D Y Stainier, F Zwartkruis, S Abdelilah, Z Rangini,[...]. Development 1996
902
16


The identification of genes with unique and essential functions in the development of the zebrafish, Danio rerio.
P Haffter, M Granato, M Brand, M C Mullins, M Hammerschmidt, D A Kane, J Odenthal, F J van Eeden, Y J Jiang, C P Heisenberg,[...]. Development 1996
15




Transactivation from Gal4-VP16 transgenic insertions for tissue-specific cell labeling and ablation in zebrafish.
Jon M Davison, Courtney M Akitake, Mary G Goll, Jerry M Rhee, Nathan Gosse, Herwig Baier, Marnie E Halpern, Steven D Leach, Michael J Parsons. Dev Biol 2007
239
14

Tol2 transposon-mediated enhancer trap to identify developmentally regulated zebrafish genes in vivo.
Serguei Parinov, Igor Kondrichin, Vladimir Korzh, Alexander Emelyanov. Dev Dyn 2004
262
13


Targeted gene expression by the Gal4-UAS system in zebrafish.
Kazuhide Asakawa, Koichi Kawakami. Dev Growth Differ 2008
116
13

Optimized Gal4 genetics for permanent gene expression mapping in zebrafish.
Martin Distel, Mario F Wullimann, Reinhard W Köster. Proc Natl Acad Sci U S A 2009
182
13

Gal4/UAS transgenic tools and their application to zebrafish.
Marnie E Halpern, Jerry Rhee, Mary G Goll, Courtney M Akitake, Michael Parsons, Steven D Leach. Zebrafish 2008
128
13

Zebrafish Enhancer TRAP transgenic line database ZETRAP 2.0.
Igor Kondrychyn, Cathleen Teh, Marta Garcia-Lecea, Youxin Guan, Ann Kang, Vladimir Korzh. Zebrafish 2011
25
52

The zebrafish reference genome sequence and its relationship to the human genome.
Kerstin Howe, Matthew D Clark, Carlos F Torroja, James Torrance, Camille Berthelot, Matthieu Muffato, John E Collins, Sean Humphray, Karen McLaren, Lucy Matthews,[...]. Nature 2013
13

Zebrafish transgenic Enhancer TRAP line database (ZETRAP).
Benjamin G H Choo, Igor Kondrichin, Sergey Parinov, Alexander Emelyanov, William Go, Wei-chang Toh, Vladimir Korzh. BMC Dev Biol 2006
63
19

In vivo protein trapping produces a functional expression codex of the vertebrate proteome.
Karl J Clark, Darius Balciunas, Hans-Martin Pogoda, Yonghe Ding, Stephanie E Westcot, Victoria M Bedell, Tammy M Greenwood, Mark D Urban, Kimberly J Skuster, Andrew M Petzold,[...]. Nat Methods 2011
116
12

Insertional mutagenesis by the Tol2 transposon-mediated enhancer trap approach generated mutations in two developmental genes: tcf7 and synembryn-like.
Saori Nagayoshi, Eriko Hayashi, Gembu Abe, Naoki Osato, Kazuhide Asakawa, Akihiro Urasaki, Kazuki Horikawa, Kazuho Ikeo, Hiroyuki Takeda, Koichi Kawakami. Development 2008
115
12

Transcriptional silencing and reactivation in transgenic zebrafish.
Mary G Goll, Ryan Anderson, Didier Y R Stainier, Allan C Spradling, Marnie E Halpern. Genetics 2009
104
12

Transparent adult zebrafish as a tool for in vivo transplantation analysis.
Richard Mark White, Anna Sessa, Christopher Burke, Teresa Bowman, Jocelyn LeBlanc, Craig Ceol, Caitlin Bourque, Michael Dovey, Wolfram Goessling, Caroline Erter Burns,[...]. Cell Stem Cell 2008
696
12

Genetic visualization with an improved GCaMP calcium indicator reveals spatiotemporal activation of the spinal motor neurons in zebrafish.
Akira Muto, Masamichi Ohkura, Tomoya Kotani, Shin-ichi Higashijima, Junichi Nakai, Koichi Kawakami. Proc Natl Acad Sci U S A 2011
123
12

Transgenerational analysis of transcriptional silencing in zebrafish.
Courtney M Akitake, Michelle Macurak, Marnie E Halpern, Mary G Goll. Dev Biol 2011
96
12

Efficient multiplex biallelic zebrafish genome editing using a CRISPR nuclease system.
Li-En Jao, Susan R Wente, Wenbiao Chen. Proc Natl Acad Sci U S A 2013
731
12

Targeted gene inactivation in zebrafish using engineered zinc-finger nucleases.
Xiangdong Meng, Marcus B Noyes, Lihua J Zhu, Nathan D Lawson, Scot A Wolfe. Nat Biotechnol 2008
533
10


Highly efficient CRISPR/Cas9-mediated knock-in in zebrafish by homology-independent DNA repair.
Thomas O Auer, Karine Duroure, Anne De Cian, Jean-Paul Concordet, Filippo Del Bene. Genome Res 2014
376
10

Efficient CRISPR/Cas9 genome editing with low off-target effects in zebrafish.
Alexander Hruscha, Peter Krawitz, Alexandra Rechenberg, Verena Heinrich, Jochen Hecht, Christian Haass, Bettina Schmid. Development 2013
292
10

Enhancer trapping in zebrafish using the Sleeping Beauty transposon.
Darius Balciunas, Ann E Davidson, Sridhar Sivasubbu, Spencer B Hermanson, Zachary Welle, Stephen C Ekker. BMC Genomics 2004
129
9

Reverse genetics in zebrafish by TILLING.
Cecilia B Moens, Thomas M Donn, Emma R Wolf-Saxon, Taylur P Ma. Brief Funct Genomic Proteomic 2008
135
9

Effective targeted gene 'knockdown' in zebrafish.
A Nasevicius, S C Ekker. Nat Genet 2000
9

Laser-induced gene expression in specific cells of transgenic zebrafish.
M C Halloran, M Sato-Maeda, J T Warren, F Su, Z Lele, P H Krone, J Y Kuwada, W Shoji. Development 2000
326
9



Large-scale enhancer detection in the zebrafish genome.
Staale Ellingsen, Mary A Laplante, Melanie König, Hiroshi Kikuta, Tomasz Furmanek, Erling A Hoivik, Thomas S Becker. Development 2005
130
9

Filtering of visual information in the tectum by an identified neural circuit.
Filippo Del Bene, Claire Wyart, Estuardo Robles, Amanda Tran, Loren Looger, Ethan K Scott, Ehud Y Isacoff, Herwig Baier. Science 2010
155
9

Brain-wide neuronal dynamics during motor adaptation in zebrafish.
Misha B Ahrens, Jennifer M Li, Michael B Orger, Drew N Robson, Alexander F Schier, Florian Engert, Ruben Portugues. Nature 2012
336
9

A 3D Searchable Database of Transgenic Zebrafish Gal4 and Cre Lines for Functional Neuroanatomy Studies.
Gregory D Marquart, Kathryn M Tabor, Mary Brown, Jennifer L Strykowski, Gaurav K Varshney, Matthew C LaFave, Thomas Mueller, Shawn M Burgess, Shin-Ichi Higashijima, Harold A Burgess. Front Neural Circuits 2015
54
16

Zebrafish behavioral profiling links drugs to biological targets and rest/wake regulation.
Jason Rihel, David A Prober, Anthony Arvanites, Kelvin Lam, Steven Zimmerman, Sumin Jang, Stephen J Haggarty, David Kokel, Lee L Rubin, Randall T Peterson,[...]. Science 2010
443
8

Heritable targeted gene disruption in zebrafish using designed zinc-finger nucleases.
Yannick Doyon, Jasmine M McCammon, Jeffrey C Miller, Farhoud Faraji, Catherine Ngo, George E Katibah, Rainier Amora, Toby D Hocking, Lei Zhang, Edward J Rebar,[...]. Nat Biotechnol 2008
597
8


Gateway compatible vectors for analysis of gene function in the zebrafish.
Jacques A Villefranc, Julio Amigo, Nathan D Lawson. Dev Dyn 2007
224
8

Temporally-controlled site-specific recombination in zebrafish.
Stefan Hans, Jan Kaslin, Dorian Freudenreich, Michael Brand. PLoS One 2009
131
8

Neural cell fate analysis in zebrafish using olig2 BAC transgenics.
Jimann Shin, Hae-Chul Park, Jolanta M Topczewska, David J Mawdsley, Bruce Appel. Methods Cell Sci 2003
195
8

Dually inducible TetON systems for tissue-specific conditional gene expression in zebrafish.
Franziska Knopf, Kristin Schnabel, Christa Haase, Katja Pfeifer, Konstantinos Anastassiadis, Gilbert Weidinger. Proc Natl Acad Sci U S A 2010
60
13

A versatile gene trap to visualize and interrogate the function of the vertebrate proteome.
Le A Trinh, Tatiana Hochgreb, Matthew Graham, David Wu, Frederique Ruf-Zamojski, Chathurani S Jayasena, Ankur Saxena, Rasheeda Hawk, Aidyl Gonzalez-Serricchio, Alana Dixson,[...]. Genes Dev 2011
81
9


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.