A citation-based method for searching scientific literature

Martin J Law, Karen M Lower, Hsiao P J Voon, Jim R Hughes, David Garrick, Vip Viprakasit, Matthew Mitson, Marco De Gobbi, Marco Marra, Andrew Morris, Aaron Abbott, Steven P Wilder, Stephen Taylor, Guilherme M Santos, Joe Cross, Helena Ayyub, Steven Jones, Jiannis Ragoussis, Daniela Rhodes, Ian Dunham, Douglas R Higgs, Richard J Gibbons. Cell 2010
Times Cited: 251







List of co-cited articles
1324 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Altered telomeres in tumors with ATRX and DAXX mutations.
Christopher M Heaphy, Roeland F de Wilde, Yuchen Jiao, Alison P Klein, Barish H Edil, Chanjuan Shi, Chetan Bettegowda, Fausto J Rodriguez, Charles G Eberhart, Sachidanand Hebbar,[...]. Science 2011
623
37

Distinct factors control histone variant H3.3 localization at specific genomic regions.
Aaron D Goldberg, Laura A Banaszynski, Kyung-Min Noh, Peter W Lewis, Simon J Elsaesser, Sonja Stadler, Scott Dewell, Martin Law, Xingyi Guo, Xuan Li,[...]. Cell 2010
780
36

Daxx is an H3.3-specific histone chaperone and cooperates with ATRX in replication-independent chromatin assembly at telomeres.
Peter W Lewis, Simon J Elsaesser, Kyung-Min Noh, Sonja C Stadler, C David Allis. Proc Natl Acad Sci U S A 2010
486
33

Loss of ATRX, genome instability, and an altered DNA damage response are hallmarks of the alternative lengthening of telomeres pathway.
Courtney A Lovejoy, Wendi Li, Steven Reisenweber, Supawat Thongthip, Joanne Bruno, Titia de Lange, Saurav De, John H J Petrini, Patricia A Sung, Maria Jasin,[...]. PLoS Genet 2012
342
32

Suppression of the alternative lengthening of telomere pathway by the chromatin remodelling factor ATRX.
David Clynes, Clare Jelinska, Barbara Xella, Helena Ayyub, Caroline Scott, Matthew Mitson, Stephen Taylor, Douglas R Higgs, Richard J Gibbons. Nat Commun 2015
128
30

Driver mutations in histone H3.3 and chromatin remodelling genes in paediatric glioblastoma.
Jeremy Schwartzentruber, Andrey Korshunov, Xiao-Yang Liu, David T W Jones, Elke Pfaff, Karine Jacob, Dominik Sturm, Adam M Fontebasso, Dong-Anh Khuong Quang, Martje Tönjes,[...]. Nature 2012
29

ATRX ADD domain links an atypical histone methylation recognition mechanism to human mental-retardation syndrome.
Shigeki Iwase, Bin Xiang, Sharmistha Ghosh, Ting Ren, Peter W Lewis, Jesse C Cochrane, C David Allis, David J Picketts, Dinshaw J Patel, Haitao Li,[...]. Nat Struct Mol Biol 2011
170
25

The death-associated protein DAXX is a novel histone chaperone involved in the replication-independent deposition of H3.3.
Pascal Drané, Khalid Ouararhni, Arnaud Depaux, Muhammad Shuaib, Ali Hamiche. Genes Dev 2010
418
24

Prevalence of quadruplexes in the human genome.
Julian L Huppert, Shankar Balasubramanian. Nucleic Acids Res 2005
23

ATRX Plays a Key Role in Maintaining Silencing at Interstitial Heterochromatic Loci and Imprinted Genes.
Hsiao P J Voon, Jim R Hughes, Christina Rode, Inti A De La Rosa-Velázquez, Thomas Jenuwein, Robert Feil, Douglas R Higgs, Richard J Gibbons. Cell Rep 2015
86
25

ATRX interacts with H3.3 in maintaining telomere structural integrity in pluripotent embryonic stem cells.
Lee H Wong, James D McGhie, Marcus Sim, Melissa A Anderson, Soyeon Ahn, Ross D Hannan, Amee J George, Kylie A Morgan, Jeffrey R Mann, K H Andy Choo. Genome Res 2010
258
22

High-throughput sequencing of DNA G-quadruplex structures in the human genome.
Vicki S Chambers, Giovanni Marsico, Jonathan M Boutell, Marco Di Antonio, Geoffrey P Smith, Shankar Balasubramanian. Nat Biotechnol 2015
498
22

G-quadruplex structures mark human regulatory chromatin.
Robert Hänsel-Hertsch, Dario Beraldi, Stefanie V Lensing, Giovanni Marsico, Katherine Zyner, Aled Parry, Marco Di Antonio, Jeremy Pike, Hiroshi Kimura, Masashi Narita,[...]. Nat Genet 2016
318
21


Atrx deficiency induces telomere dysfunction, endocrine defects, and reduced life span.
L Ashley Watson, Lauren A Solomon, Jennifer Ruizhe Li, Yan Jiang, Matthew Edwards, Kazuo Shin-ya, Frank Beier, Nathalie G Bérubé. J Clin Invest 2013
56
33

The chromatin remodelling factor ATRX suppresses R-loops in transcribed telomeric repeats.
Diu Tt Nguyen, Hsiao Phin J Voon, Barbara Xella, Caroline Scott, David Clynes, Christian Babbs, Helena Ayyub, Jon Kerry, Jacqueline A Sharpe, Jackie A Sloane-Stanley,[...]. EMBO Rep 2017
44
43

ATRX-mediated chromatin association of histone variant macroH2A1 regulates α-globin expression.
Kajan Ratnakumar, Luis F Duarte, Gary LeRoy, Dan Hasson, Daniel Smeets, Chiara Vardabasso, Clemens Bönisch, Tianying Zeng, Bin Xiang, David Y Zhang,[...]. Genes Dev 2012
83
21

Combinatorial readout of histone H3 modifications specifies localization of ATRX to heterochromatin.
Sebastian Eustermann, Ji-Chun Yang, Martin J Law, Rachel Amos, Lynda M Chapman, Clare Jelinska, David Garrick, David Clynes, Richard J Gibbons, Daniela Rhodes,[...]. Nat Struct Mol Biol 2011
148
18

DAXX/ATRX, MEN1, and mTOR pathway genes are frequently altered in pancreatic neuroendocrine tumors.
Yuchen Jiao, Chanjuan Shi, Barish H Edil, Roeland F de Wilde, David S Klimstra, Anirban Maitra, Richard D Schulick, Laura H Tang, Christopher L Wolfgang, Michael A Choti,[...]. Science 2011
18

ATRX dysfunction induces replication defects in primary mouse cells.
David Clynes, Clare Jelinska, Barbara Xella, Helena Ayyub, Stephen Taylor, Matthew Mitson, Csanád Z Bachrati, Douglas R Higgs, Richard J Gibbons. PLoS One 2014
51
35

Alpha thalassemia/mental retardation syndrome X-linked gene product ATRX is required for proper replication restart and cellular resistance to replication stress.
Justin Wai-Chung Leung, Gargi Ghosal, Wenqi Wang, Xi Shen, Jiadong Wang, Lei Li, Junjie Chen. J Biol Chem 2013
52
32


Histone H3.3 is required for endogenous retroviral element silencing in embryonic stem cells.
Simon J Elsässer, Kyung-Min Noh, Nichole Diaz, C David Allis, Laura A Banaszynski. Nature 2015
180
16

The ATRX-ADD domain binds to H3 tail peptides and reads the combined methylation state of K4 and K9.
Arunkumar Dhayalan, Raluca Tamas, Ina Bock, Anna Tattermusch, Emilia Dimitrova, Srikanth Kudithipudi, Sergey Ragozin, Albert Jeltsch. Hum Mol Genet 2011
103
16

ATRX directs binding of PRC2 to Xist RNA and Polycomb targets.
Kavitha Sarma, Catherine Cifuentes-Rojas, Ayla Ergun, Amanda Del Rosario, Yesu Jeon, Forest White, Ruslan Sadreyev, Jeannie T Lee. Cell 2014
133
16

Quantitative visualization of DNA G-quadruplex structures in human cells.
Giulia Biffi, David Tannahill, John McCafferty, Shankar Balasubramanian. Nat Chem 2013
16

Mutations in the chromatin-associated protein ATRX.
Richard J Gibbons, Takahito Wada, Christopher A Fisher, Nicola Malik, Matthew J Mitson, David P Steensma, Alan Fryer, David R Goudie, Ian D Krantz, Joanne Traeger-Synodinos. Hum Mutat 2008
103
15

Pif1 family helicases suppress genome instability at G-quadruplex motifs.
Katrin Paeschke, Matthew L Bochman, P Daniela Garcia, Petr Cejka, Katherine L Friedman, Stephen C Kowalczykowski, Virginia A Zakian. Nature 2013
277
15

Atrx promotes heterochromatin formation at retrotransposons.
Dennis Sadic, Katharina Schmidt, Sophia Groh, Ivan Kondofersky, Joachim Ellwart, Christiane Fuchs, Fabian J Theis, Gunnar Schotta. EMBO Rep 2015
64
23

Re-evaluation of G-quadruplex propensity with G4Hunter.
Amina Bedrat, Laurent Lacroix, Jean-Louis Mergny. Nucleic Acids Res 2016
239
15


RTEL1 dismantles T loops and counteracts telomeric G4-DNA to maintain telomere integrity.
Jean-Baptiste Vannier, Visnja Pavicic-Kaltenbrunner, Mark I R Petalcorin, Hao Ding, Simon J Boulton. Cell 2012
290
14

Alternative lengthening of telomeres renders cancer cells hypersensitive to ATR inhibitors.
Rachel Litman Flynn, Kelli E Cox, Maya Jeitany, Hiroaki Wakimoto, Alysia R Bryll, Neil J Ganem, Francesca Bersani, Jose R Pineda, Mario L Suvà, Cyril H Benes,[...]. Science 2015
241
14

ATRX represses alternative lengthening of telomeres.
Christine E Napier, Lily I Huschtscha, Adam Harvey, Kylie Bower, Jane R Noble, Eric A Hendrickson, Roger R Reddel. Oncotarget 2015
79
17

ATRX promotes gene expression by facilitating transcriptional elongation through guanine-rich coding regions.
Michael A Levy, Kristin D Kernohan, Yan Jiang, Nathalie G Bérubé. Hum Mol Genet 2015
41
34

The ATRX syndrome protein forms a chromatin-remodeling complex with Daxx and localizes in promyelocytic leukemia nuclear bodies.
Yutong Xue, Richard Gibbons, Zhijiang Yan, Dafeng Yang, Tarra L McDowell, Salvatore Sechi, Jun Qin, Sharleen Zhou, Doug Higgs, Weidong Wang. Proc Natl Acad Sci U S A 2003
257
14

Small-molecule-induced DNA damage identifies alternative DNA structures in human genes.
Raphaël Rodriguez, Kyle M Miller, Josep V Forment, Charles R Bradshaw, Mehran Nikan, Sébastien Britton, Tobias Oelschlaegel, Blerta Xhemalce, Shankar Balasubramanian, Stephen P Jackson. Nat Chem Biol 2012
386
14

Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription.
Adam Siddiqui-Jain, Cory L Grand, David J Bearss, Laurence H Hurley. Proc Natl Acad Sci U S A 2002
14

The chromatin remodeller ATRX: a repeat offender in human disease.
David Clynes, Douglas R Higgs, Richard J Gibbons. Trends Biochem Sci 2013
73
17

ATRX encodes a novel member of the SNF2 family of proteins: mutations point to a common mechanism underlying the ATR-X syndrome.
D J Picketts, D R Higgs, S Bachoo, D J Blake, O W Quarrell, R J Gibbons. Hum Mol Genet 1996
180
13

RNaseH1 regulates TERRA-telomeric DNA hybrids and telomere maintenance in ALT tumour cells.
Rajika Arora, Yongwoo Lee, Harry Wischnewski, Catherine M Brun, Tobias Schwarz, Claus M Azzalin. Nat Commun 2014
196
13

The Daxx/Atrx Complex Protects Tandem Repetitive Elements during DNA Hypomethylation by Promoting H3K9 Trimethylation.
Quanyuan He, Hyeung Kim, Rui Huang, Weisi Lu, Mengfan Tang, Fengtao Shi, Dong Yang, Xiya Zhang, Junjiu Huang, Dan Liu,[...]. Cell Stem Cell 2015
63
20

Loss of Atrx affects trophoblast development and the pattern of X-inactivation in extraembryonic tissues.
David Garrick, Jackie A Sharpe, Ruth Arkell, Lorraine Dobbie, Andrew J H Smith, William G Wood, Douglas R Higgs, Richard J Gibbons. PLoS Genet 2006
102
13

G-quadruplexes and their regulatory roles in biology.
Daniela Rhodes, Hans J Lipps. Nucleic Acids Res 2015
661
13

ATRX and DAXX: Mechanisms and Mutations.
Michael A Dyer, Zulekha A Qadeer, David Valle-Garcia, Emily Bernstein. Cold Spring Harb Perspect Med 2017
57
22


Mammalian telomeres resemble fragile sites and require TRF1 for efficient replication.
Agnel Sfeir, Settapong T Kosiyatrakul, Dirk Hockemeyer, Sheila L MacRae, Jan Karlseder, Carl L Schildkraut, Titia de Lange. Cell 2009
636
12


Histone H3.1 and H3.3 complexes mediate nucleosome assembly pathways dependent or independent of DNA synthesis.
Hideaki Tagami, Dominique Ray-Gallet, Geneviève Almouzni, Yoshihiro Nakatani. Cell 2004
894
12

Highly prevalent putative quadruplex sequence motifs in human DNA.
Alan K Todd, Matthew Johnston, Stephen Neidle. Nucleic Acids Res 2005
656
12


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.