A citation-based method for searching scientific literature

Gaëlle Marenne, Benjamín Rodríguez-Santiago, Montserrat García Closas, Luis Pérez-Jurado, Nathaniel Rothman, Daniel Rico, Guillermo Pita, David G Pisano, Manolis Kogevinas, Debra T Silverman, Alfonso Valencia, Francisco X Real, Stephen J Chanock, Emmanuelle Génin, Núria Malats. Hum Mutat 2011
Times Cited: 48







List of co-cited articles
244 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


PennCNV: an integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data.
Kai Wang, Mingyao Li, Dexter Hadley, Rui Liu, Joseph Glessner, Struan F A Grant, Hakon Hakonarson, Maja Bucan. Genome Res 2007
70

Comparing CNV detection methods for SNP arrays.
Laura Winchester, Christopher Yau, Jiannis Ragoussis. Brief Funct Genomic Proteomic 2009
141
50

QuantiSNP: an Objective Bayes Hidden-Markov Model to detect and accurately map copy number variation using SNP genotyping data.
Stefano Colella, Christopher Yau, Jennifer M Taylor, Ghazala Mirza, Helen Butler, Penny Clouston, Anne S Bassett, Anneke Seller, Christopher C Holmes, Jiannis Ragoussis. Nucleic Acids Res 2007
418
45

Global variation in copy number in the human genome.
Richard Redon, Shumpei Ishikawa, Karen R Fitch, Lars Feuk, George H Perry, T Daniel Andrews, Heike Fiegler, Michael H Shapero, Andrew R Carson, Wenwei Chen,[...]. Nature 2006
43

Comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants.
Dalila Pinto, Katayoon Darvishi, Xinghua Shi, Diana Rajan, Diane Rigler, Tom Fitzgerald, Anath C Lionel, Bhooma Thiruvahindrapuram, Jeffrey R Macdonald, Ryan Mills,[...]. Nat Biotechnol 2011
299
33

Adjustment of genomic waves in signal intensities from whole-genome SNP genotyping platforms.
Sharon J Diskin, Mingyao Li, Cuiping Hou, Shuzhang Yang, Joseph Glessner, Hakon Hakonarson, Maja Bucan, John M Maris, Kai Wang. Nucleic Acids Res 2008
231
25

Origins and functional impact of copy number variation in the human genome.
Donald F Conrad, Dalila Pinto, Richard Redon, Lars Feuk, Omer Gokcumen, Yujun Zhang, Jan Aerts, T Daniel Andrews, Chris Barnes, Peter Campbell,[...]. Nature 2010
22

Integrated genotype calling and association analysis of SNPs, common copy number polymorphisms and rare CNVs.
Joshua M Korn, Finny G Kuruvilla, Steven A McCarroll, Alec Wysoker, James Nemesh, Simon Cawley, Earl Hubbell, Jim Veitch, Patrick J Collins, Katayoon Darvishi,[...]. Nat Genet 2008
597
22

Detection of large-scale variation in the human genome.
A John Iafrate, Lars Feuk, Miguel N Rivera, Marc L Listewnik, Patricia K Donahoe, Ying Qi, Stephen W Scherer, Charles Lee. Nat Genet 2004
20

Large-scale copy number polymorphism in the human genome.
Jonathan Sebat, B Lakshmi, Jennifer Troge, Joan Alexander, Janet Young, Pär Lundin, Susanne Månér, Hillary Massa, Megan Walker, Maoyen Chi,[...]. Science 2004
20

Comparative analyses of seven algorithms for copy number variant identification from single nucleotide polymorphism arrays.
Andrew E Dellinger, Seang-Mei Saw, Liang K Goh, Mark Seielstad, Terri L Young, Yi-Ju Li. Nucleic Acids Res 2010
83
20

Relative impact of nucleotide and copy number variation on gene expression phenotypes.
Barbara E Stranger, Matthew S Forrest, Mark Dunning, Catherine E Ingle, Claude Beazley, Natalie Thorne, Richard Redon, Christine P Bird, Anna de Grassi, Charles Lee,[...]. Science 2007
20

Structural variation in the human genome.
Lars Feuk, Andrew R Carson, Stephen W Scherer. Nat Rev Genet 2006
20

PLINK: a tool set for whole-genome association and population-based linkage analyses.
Shaun Purcell, Benjamin Neale, Kathe Todd-Brown, Lori Thomas, Manuel A R Ferreira, David Bender, Julian Maller, Pamela Sklar, Paul I W de Bakker, Mark J Daly,[...]. Am J Hum Genet 2007
18

Copy number variation in human health, disease, and evolution.
Feng Zhang, Wenli Gu, Matthew E Hurles, James R Lupski. Annu Rev Genomics Hum Genet 2009
714
18

Genomic characteristics of cattle copy number variations.
Yali Hou, George E Liu, Derek M Bickhart, Maria Francesca Cardone, Kai Wang, Eui-Soo Kim, Lakshmi K Matukumalli, Mario Ventura, Jiuzhou Song, Paul M VanRaden,[...]. BMC Genomics 2011
144
18

Finding the missing heritability of complex diseases.
Teri A Manolio, Francis S Collins, Nancy J Cox, David B Goldstein, Lucia A Hindorff, David J Hunter, Mark I McCarthy, Erin M Ramos, Lon R Cardon, Aravinda Chakravarti,[...]. Nature 2009
16

Mapping copy number variation by population-scale genome sequencing.
Ryan E Mills, Klaudia Walter, Chip Stewart, Robert E Handsaker, Ken Chen, Can Alkan, Alexej Abyzov, Seungtai Chris Yoon, Kai Ye, R Keira Cheetham,[...]. Nature 2011
728
16

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources.
Da Wei Huang, Brad T Sherman, Richard A Lempicki. Nat Protoc 2009
16

Genome-wide detection of copy number variations using high-density SNP genotyping platforms in Holsteins.
Li Jiang, Jicai Jiang, Jie Yang, Xuan Liu, Jiying Wang, Haifei Wang, Xiangdong Ding, Jianfeng Liu, Qin Zhang. BMC Genomics 2013
59
16

Analysis of copy number variations in the sheep genome using 50K SNP BeadChip array.
Jiasen Liu, Li Zhang, Lingyang Xu, Hangxing Ren, Jian Lu, Xiaoning Zhang, Shifang Zhang, Xinlei Zhou, Caihong Wei, Fuping Zhao,[...]. BMC Genomics 2013
57
16

Integrated detection and population-genetic analysis of SNPs and copy number variation.
Steven A McCarroll, Finny G Kuruvilla, Joshua M Korn, Simon Cawley, James Nemesh, Alec Wysoker, Michael H Shapero, Paul I W de Bakker, Julian B Maller, Andrew Kirby,[...]. Nat Genet 2008
695
14

High-resolution genomic profiling of chromosomal aberrations using Infinium whole-genome genotyping.
Daniel A Peiffer, Jennie M Le, Frank J Steemers, Weihua Chang, Tony Jenniges, Francisco Garcia, Kirt Haden, Jiangzhen Li, Chad A Shaw, John Belmont,[...]. Genome Res 2006
375
14

Normalization of Illumina Infinium whole-genome SNP data improves copy number estimates and allelic intensity ratios.
Johan Staaf, Johan Vallon-Christersson, David Lindgren, Gunnar Juliusson, Richard Rosenquist, Mattias Höglund, Ake Borg, Markus Ringnér. BMC Bioinformatics 2008
102
14

The effect of algorithms on copy number variant detection.
Debby W Tsuang, Steven P Millard, Benjamin Ely, Peter Chi, Kenneth Wang, Wendy H Raskind, Sulgi Kim, Zoran Brkanac, Chang-En Yu. PLoS One 2010
24
29

Accuracy of CNV Detection from GWAS Data.
Dandan Zhang, Yudong Qian, Nirmala Akula, Ney Alliey-Rodriguez, Jinsong Tang, Elliot S Gershon, Chunyu Liu. PLoS One 2011
60
14

Copy number variation in the porcine genome inferred from a 60 k SNP BeadChip.
Yuliaxis Ramayo-Caldas, Anna Castelló, Romi N Pena, Estefania Alves, Anna Mercadé, Carla A Souza, Ana I Fernández, Miguel Perez-Enciso, Josep M Folch. BMC Genomics 2010
81
14

Structural variation in the human genome and its role in disease.
Paweł Stankiewicz, James R Lupski. Annu Rev Med 2010
690
14

Identification of copy number variations and common deletion polymorphisms in cattle.
Joon Seol Bae, Hyun Sub Cheong, Lyoung Hyo Kim, Suk NamGung, Tae Joon Park, Ji-Yong Chun, Jason Yongha Kim, Charisse Flerida A Pasaje, Jin Sol Lee, Hyoung Doo Shin. BMC Genomics 2010
99
14

Genome structural variation discovery and genotyping.
Can Alkan, Bradley P Coe, Evan E Eichler. Nat Rev Genet 2011
782
14

A first comparative map of copy number variations in the sheep genome.
L Fontanesi, F Beretti, P L Martelli, M Colombo, S Dall'olio, M Occidente, B Portolano, R Casadio, D Matassino, V Russo. Genomics 2011
69
14

Comparative analysis of algorithms for identifying amplifications and deletions in array CGH data.
Weil R Lai, Mark D Johnson, Raju Kucherlapati, Peter J Park. Bioinformatics 2005
240
12

R-Gada: a fast and flexible pipeline for copy number analysis in association studies.
Roger Pique-Regi, Alejandro Cáceres, Juan R González. BMC Bioinformatics 2010
43
13

Software comparison for evaluating genomic copy number variation for Affymetrix 6.0 SNP array platform.
Jeanette E Eckel-Passow, Elizabeth J Atkinson, Sooraj Maharjan, Sharon L R Kardia, Mariza de Andrade. BMC Bioinformatics 2011
42
14

Copy number variation in intron 1 of SOX5 causes the Pea-comb phenotype in chickens.
Dominic Wright, Henrik Boije, Jennifer R S Meadows, Bertrand Bed'hom, David Gourichon, Agathe Vieaud, Michèle Tixier-Boichard, Carl-Johan Rubin, Freyja Imsland, Finn Hallböök,[...]. PLoS Genet 2009
142
12

The genomic architecture of segmental duplications and associated copy number variants in dogs.
Thomas J Nicholas, Ze Cheng, Mario Ventura, Katrina Mealey, Evan E Eichler, Joshua M Akey. Genome Res 2009
116
12

Mapping DNA structural variation in dogs.
Wei-Kang Chen, Joshua D Swartz, Laura J Rush, Carlos E Alvarez. Genome Res 2009
102
12

Analysis of copy number variants by three detection algorithms and their association with body size in horses.
Julia Metzger, Ute Philipp, Maria Susana Lopes, Artur da Camara Machado, Michela Felicetti, Maurizio Silvestrelli, Ottmar Distl. BMC Genomics 2013
38
15

Genotype, haplotype and copy-number variation in worldwide human populations.
Mattias Jakobsson, Sonja W Scholz, Paul Scheet, J Raphael Gibbs, Jenna M VanLiere, Hon-Chung Fung, Zachary A Szpiech, James H Degnan, Kai Wang, Rita Guerreiro,[...]. Nature 2008
600
10

Assessment of algorithms for high throughput detection of genomic copy number variation in oligonucleotide microarray data.
Agnes Baross, Allen D Delaney, H Irene Li, Tarun Nayar, Stephane Flibotte, Hong Qian, Susanna Y Chan, Jennifer Asano, Adrian Ally, Manqiu Cao,[...]. BMC Bioinformatics 2007
48
10

Copy number variation at 1q21.1 associated with neuroblastoma.
Sharon J Diskin, Cuiping Hou, Joseph T Glessner, Edward F Attiyeh, Marci Laudenslager, Kristopher Bosse, Kristina Cole, Yaël P Mossé, Andrew Wood, Jill E Lynch,[...]. Nature 2009
269
10

A snapshot of CNVs in the pig genome.
João Fadista, Marianne Nygaard, Lars-Erik Holm, Bo Thomsen, Christian Bendixen. PLoS One 2008
89
10

Copy number variation and missense mutations of the agouti signaling protein (ASIP) gene in goat breeds with different coat colors.
L Fontanesi, F Beretti, V Riggio, E Gómez González, S Dall'Olio, R Davoli, V Russo, B Portolano. Cytogenet Genome Res 2009
86
10


Distribution and functional impact of DNA copy number variation in the rat.
Victor Guryev, Kathrin Saar, Tatjana Adamovic, Mark Verheul, Sebastiaan A A C van Heesch, Stuart Cook, Michal Pravenec, Timothy Aitman, Howard Jacob, James D Shull,[...]. Nat Genet 2008
154
10

Copy number variation of individual cattle genomes using next-generation sequencing.
Derek M Bickhart, Yali Hou, Steven G Schroeder, Can Alkan, Maria Francesca Cardone, Lakshmi K Matukumalli, Jiuzhou Song, Robert D Schnabel, Mario Ventura, Jeremy F Taylor,[...]. Genome Res 2012
185
10

A genome-wide detection of copy number variations using SNP genotyping arrays in swine.
Jiying Wang, Jicai Jiang, Weixuan Fu, Li Jiang, Xiangdong Ding, Jian-Feng Liu, Qin Zhang. BMC Genomics 2012
71
10

Copy number variation in the genomes of domestic animals.
A Clop, O Vidal, M Amills. Anim Genet 2012
80
10

KEGG for representation and analysis of molecular networks involving diseases and drugs.
Minoru Kanehisa, Susumu Goto, Miho Furumichi, Mao Tanabe, Mika Hirakawa. Nucleic Acids Res 2010
10

Fine mapping of copy number variations on two cattle genome assemblies using high density SNP array.
Yali Hou, Derek M Bickhart, Miranda L Hvinden, Congjun Li, Jiuzhou Song, Didier A Boichard, Sébastien Fritz, André Eggen, Sue DeNise, George R Wiggans,[...]. BMC Genomics 2012
60
10


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.