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Times Cited: 1431
Times Cited: 1431
Times Cited
Times Co-cited
Similarity
Histone H3K27ac separates active from poised enhancers and predicts developmental state.
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Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities.
Sven Heinz, Christopher Benner, Nathanael Spann, Eric Bertolino, Yin C Lin, Peter Laslo, Jason X Cheng, Cornelis Murre, Harinder Singh, Christopher K Glass. Mol Cell 2010
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Master transcription factors and mediator establish super-enhancers at key cell identity genes.
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Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome.
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The Sequence Alignment/Map format and SAMtools.
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Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
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BEDTools: a flexible suite of utilities for comparing genomic features.
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Histone modifications at human enhancers reflect global cell-type-specific gene expression.
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Epigenetic signatures distinguish multiple classes of enhancers with distinct cellular functions.
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Transcription factors: from enhancer binding to developmental control.
François Spitz, Eileen E M Furlong. Nat Rev Genet 2012
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Super-enhancers in the control of cell identity and disease.
Denes Hnisz, Brian J Abraham, Tong Ihn Lee, Ashley Lau, Violaine Saint-André, Alla A Sigova, Heather A Hoke, Richard A Young. Cell 2013
Denes Hnisz, Brian J Abraham, Tong Ihn Lee, Ashley Lau, Violaine Saint-André, Alla A Sigova, Heather A Hoke, Richard A Young. Cell 2013
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ChIP-seq accurately predicts tissue-specific activity of enhancers.
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ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization.
Guangchuang Yu, Li-Gen Wang, Qing-Yu He. Bioinformatics 2015
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Widespread transcription at neuronal activity-regulated enhancers.
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Mapping and analysis of chromatin state dynamics in nine human cell types.
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A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.
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Trimmomatic: a flexible trimmer for Illumina sequence data.
Anthony M Bolger, Marc Lohse, Bjoern Usadel. Bioinformatics 2014
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James T Robinson, Helga Thorvaldsdóttir, Wendy Winckler, Mitchell Guttman, Eric S Lander, Gad Getz, Jill P Mesirov. Nat Biotechnol 2011
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Genome-wide maps of chromatin state in pluripotent and lineage-committed cells.
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Topological domains in mammalian genomes identified by analysis of chromatin interactions.
Jesse R Dixon, Siddarth Selvaraj, Feng Yue, Audrey Kim, Yan Li, Yin Shen, Ming Hu, Jun S Liu, Bing Ren. Nature 2012
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Selective inhibition of tumor oncogenes by disruption of super-enhancers.
Jakob Lovén, Heather A Hoke, Charles Y Lin, Ashley Lau, David A Orlando, Christopher R Vakoc, James E Bradner, Tong Ihn Lee, Richard A Young. Cell 2013
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Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation.
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Disruptions of topological chromatin domains cause pathogenic rewiring of gene-enhancer interactions.
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Fast and accurate short read alignment with Burrows-Wheeler transform.
Heng Li, Richard Durbin. Bioinformatics 2009
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Integrative analysis of 111 reference human epigenomes.
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An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues.
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A bivalent chromatin structure marks key developmental genes in embryonic stem cells.
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Enhancer redundancy provides phenotypic robustness in mammalian development.
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Mediator and cohesin connect gene expression and chromatin architecture.
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Comprehensive mapping of long-range interactions reveals folding principles of the human genome.
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The accessible chromatin landscape of the human genome.
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GREAT improves functional interpretation of cis-regulatory regions.
Cory Y McLean, Dave Bristor, Michael Hiller, Shoa L Clarke, Bruce T Schaar, Craig B Lowe, Aaron M Wenger, Gill Bejerano. Nat Biotechnol 2010
Cory Y McLean, Dave Bristor, Michael Hiller, Shoa L Clarke, Bruce T Schaar, Craig B Lowe, Aaron M Wenger, Gill Bejerano. Nat Biotechnol 2010
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Long-range enhancer-promoter contacts in gene expression control.
Stefan Schoenfelder, Peter Fraser. Nat Rev Genet 2019
Stefan Schoenfelder, Peter Fraser. Nat Rev Genet 2019
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An atlas of active enhancers across human cell types and tissues.
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A Phase Separation Model for Transcriptional Control.
Denes Hnisz, Krishna Shrinivas, Richard A Young, Arup K Chakraborty, Phillip A Sharp. Cell 2017
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Expanded encyclopaedias of DNA elements in the human and mouse genomes.
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deepTools: a flexible platform for exploring deep-sequencing data.
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The ENCODE Blacklist: Identification of Problematic Regions of the Genome.
Haley M Amemiya, Anshul Kundaje, Alan P Boyle. Sci Rep 2019
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Organizational principles of 3D genome architecture.
M Jordan Rowley, Victor G Corces. Nat Rev Genet 2018
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ChromHMM: automating chromatin-state discovery and characterization.
Jason Ernst, Manolis Kellis. Nat Methods 2012
Jason Ernst, Manolis Kellis. Nat Methods 2012
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Polycomb-dependent H3K27me1 and H3K27me2 regulate active transcription and enhancer fidelity.
Karin J Ferrari, Andrea Scelfo, Sriganesh Jammula, Alessandro Cuomo, Iros Barozzi, Alexandra Stützer, Wolfgang Fischle, Tiziana Bonaldi, Diego Pasini. Mol Cell 2014
Karin J Ferrari, Andrea Scelfo, Sriganesh Jammula, Alessandro Cuomo, Iros Barozzi, Alexandra Stützer, Wolfgang Fischle, Tiziana Bonaldi, Diego Pasini. Mol Cell 2014
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Transcriptional enhancers: from properties to genome-wide predictions.
Daria Shlyueva, Gerald Stampfel, Alexander Stark. Nat Rev Genet 2014
Daria Shlyueva, Gerald Stampfel, Alexander Stark. Nat Rev Genet 2014
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Genome-wide quantitative enhancer activity maps identified by STARR-seq.
Cosmas D Arnold, Daniel Gerlach, Christoph Stelzer, Łukasz M Boryń, Martina Rath, Alexander Stark. Science 2013
Cosmas D Arnold, Daniel Gerlach, Christoph Stelzer, Łukasz M Boryń, Martina Rath, Alexander Stark. Science 2013
7
Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.