A citation-based method for searching scientific literature

Catherine A McCarty, Rex L Chisholm, Christopher G Chute, Iftikhar J Kullo, Gail P Jarvik, Eric B Larson, Rongling Li, Daniel R Masys, Marylyn D Ritchie, Dan M Roden, Jeffery P Struewing, Wendy A Wolf. BMC Med Genomics 2011
Times Cited: 449







List of co-cited articles
559 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The Electronic Medical Records and Genomics (eMERGE) Network: past, present, and future.
Omri Gottesman, Helena Kuivaniemi, Gerard Tromp, W Andrew Faucett, Rongling Li, Teri A Manolio, Saskia C Sanderson, Joseph Kannry, Randi Zinberg, Melissa A Basford,[...]. Genet Med 2013
404
38

PheWAS: demonstrating the feasibility of a phenome-wide scan to discover gene-disease associations.
Joshua C Denny, Marylyn D Ritchie, Melissa A Basford, Jill M Pulley, Lisa Bastarache, Kristin Brown-Gentry, Deede Wang, Dan R Masys, Dan M Roden, Dana C Crawford. Bioinformatics 2010
551
18

Systematic comparison of phenome-wide association study of electronic medical record data and genome-wide association study data.
Joshua C Denny, Lisa Bastarache, Marylyn D Ritchie, Robert J Carroll, Raquel Zink, Jonathan D Mosley, Julie R Field, Jill M Pulley, Andrea H Ramirez, Erica Bowton,[...]. Nat Biotechnol 2013
453
13

PLINK: a tool set for whole-genome association and population-based linkage analyses.
Shaun Purcell, Benjamin Neale, Kathe Todd-Brown, Lori Thomas, Manuel A R Ferreira, David Bender, Julian Maller, Pamela Sklar, Paul I W de Bakker, Mark J Daly,[...]. Am J Hum Genet 2007
13

PheKB: a catalog and workflow for creating electronic phenotype algorithms for transportability.
Jacqueline C Kirby, Peter Speltz, Luke V Rasmussen, Melissa Basford, Omri Gottesman, Peggy L Peissig, Jennifer A Pacheco, Gerard Tromp, Jyotishman Pathak, David S Carrell,[...]. J Am Med Inform Assoc 2016
147
13

Second-generation PLINK: rising to the challenge of larger and richer datasets.
Christopher C Chang, Carson C Chow, Laurent Cam Tellier, Shashaank Vattikuti, Shaun M Purcell, James J Lee. Gigascience 2015
12

Validation of electronic medical record-based phenotyping algorithms: results and lessons learned from the eMERGE network.
Katherine M Newton, Peggy L Peissig, Abel Ngo Kho, Suzette J Bielinski, Richard L Berg, Vidhu Choudhary, Melissa Basford, Christopher G Chute, Iftikhar J Kullo, Rongling Li,[...]. J Am Med Inform Assoc 2013
220
12

Next-generation genotype imputation service and methods.
Sayantan Das, Lukas Forer, Sebastian Schönherr, Carlo Sidore, Adam E Locke, Alan Kwong, Scott I Vrieze, Emily Y Chew, Shawn Levy, Matt McGue,[...]. Nat Genet 2016
12

The eMERGE genotype set of 83,717 subjects imputed to ~40 million variants genome wide and association with the herpes zoster medical record phenotype.
Ian B Stanaway, Taryn O Hall, Elisabeth A Rosenthal, Melody Palmer, Vivek Naranbhai, Rachel Knevel, Bahram Namjou-Khales, Robert J Carroll, Krzysztof Kiryluk, Adam S Gordon,[...]. Genet Epidemiol 2019
21
57

A global reference for human genetic variation.
Adam Auton, Lisa D Brooks, Richard M Durbin, Erik P Garrison, Hyun Min Kang, Jan O Korbel, Jonathan L Marchini, Shane McCarthy, Gil A McVean, Gonçalo R Abecasis. Nature 2015
12

Million Veteran Program: A mega-biobank to study genetic influences on health and disease.
John Michael Gaziano, John Concato, Mary Brophy, Louis Fiore, Saiju Pyarajan, James Breeling, Stacey Whitbourne, Jennifer Deen, Colleen Shannon, Donald Humphries,[...]. J Clin Epidemiol 2016
295
11

Principal components analysis corrects for stratification in genome-wide association studies.
Alkes L Price, Nick J Patterson, Robert M Plenge, Michael E Weinblatt, Nancy A Shadick, David Reich. Nat Genet 2006
11

R PheWAS: data analysis and plotting tools for phenome-wide association studies in the R environment.
Robert J Carroll, Lisa Bastarache, Joshua C Denny. Bioinformatics 2014
122
11

Genome-wide polygenic scores for common diseases identify individuals with risk equivalent to monogenic mutations.
Amit V Khera, Mark Chaffin, Krishna G Aragam, Mary E Haas, Carolina Roselli, Seung Hoan Choi, Pradeep Natarajan, Eric S Lander, Steven A Lubitz, Patrick T Ellinor,[...]. Nat Genet 2018
838
11

UK biobank: an open access resource for identifying the causes of a wide range of complex diseases of middle and old age.
Cathie Sudlow, John Gallacher, Naomi Allen, Valerie Beral, Paul Burton, John Danesh, Paul Downey, Paul Elliott, Jane Green, Martin Landray,[...]. PLoS Med 2015
10

Development of a large-scale de-identified DNA biobank to enable personalized medicine.
D M Roden, J M Pulley, M A Basford, G R Bernard, E W Clayton, J R Balser, D R Masys. Clin Pharmacol Ther 2008
544
10

The UK Biobank resource with deep phenotyping and genomic data.
Clare Bycroft, Colin Freeman, Desislava Petkova, Gavin Band, Lloyd T Elliott, Kevin Sharp, Allan Motyer, Damjan Vukcevic, Olivier Delaneau, Jared O'Connell,[...]. Nature 2018
10

A reference panel of 64,976 haplotypes for genotype imputation.
Shane McCarthy, Sayantan Das, Warren Kretzschmar, Olivier Delaneau, Andrew R Wood, Alexander Teumer, Hyun Min Kang, Christian Fuchsberger, Petr Danecek, Kevin Sharp,[...]. Nat Genet 2016
9

A new initiative on precision medicine.
Francis S Collins, Harold Varmus. N Engl J Med 2015
9

Mining electronic health records: towards better research applications and clinical care.
Peter B Jensen, Lars J Jensen, Søren Brunak. Nat Rev Genet 2012
540
9

Clinical use of current polygenic risk scores may exacerbate health disparities.
Alicia R Martin, Masahiro Kanai, Yoichiro Kamatani, Yukinori Okada, Benjamin M Neale, Mark J Daly. Nat Genet 2019
481
9

eMERGEing progress in genomics-the first seven years.
Dana C Crawford, David R Crosslin, Gerard Tromp, Iftikhar J Kullo, Helena Kuivaniemi, M Geoffrey Hayes, Joshua C Denny, William S Bush, Jonathan L Haines, Dan M Roden,[...]. Front Genet 2014
59
13

Electronic medical records for genetic research: results of the eMERGE consortium.
Abel N Kho, Jennifer A Pacheco, Peggy L Peissig, Luke Rasmussen, Katherine M Newton, Noah Weston, Paul K Crane, Jyotishman Pathak, Christopher G Chute, Suzette J Bielinski,[...]. Sci Transl Med 2011
227
8

Observational Health Data Sciences and Informatics (OHDSI): Opportunities for Observational Researchers.
George Hripcsak, Jon D Duke, Nigam H Shah, Christian G Reich, Vojtech Huser, Martijn J Schuemie, Marc A Suchard, Rae Woong Park, Ian Chi Kei Wong, Peter R Rijnbeek,[...]. Stud Health Technol Inform 2015
373
8

The "All of Us" Research Program.
Joshua C Denny, Joni L Rutter, David B Goldstein, Anthony Philippakis, Jordan W Smoller, Gwynne Jenkins, Eric Dishman. N Engl J Med 2019
209
8

Pitfalls of merging GWAS data: lessons learned in the eMERGE network and quality control procedures to maintain high data quality.
Rebecca L Zuvich, Loren L Armstrong, Suzette J Bielinski, Yuki Bradford, Christopher S Carlson, Dana C Crawford, Andrew T Crenshaw, Mariza de Andrade, Kimberly F Doheny, Jonathan L Haines,[...]. Genet Epidemiol 2011
51
13

Next-generation phenotyping of electronic health records.
George Hripcsak, David J Albers. J Am Med Inform Assoc 2013
304
7

Use of diverse electronic medical record systems to identify genetic risk for type 2 diabetes within a genome-wide association study.
Abel N Kho, M Geoffrey Hayes, Laura Rasmussen-Torvik, Jennifer A Pacheco, William K Thompson, Loren L Armstrong, Joshua C Denny, Peggy L Peissig, Aaron W Miller, Wei-Qi Wei,[...]. J Am Med Inform Assoc 2012
187
7

Evaluating phecodes, clinical classification software, and ICD-9-CM codes for phenome-wide association studies in the electronic health record.
Wei-Qi Wei, Lisa A Bastarache, Robert J Carroll, Joy E Marlo, Travis J Osterman, Eric R Gamazon, Nancy J Cox, Dan M Roden, Joshua C Denny. PLoS One 2017
84
8


Serving the enterprise and beyond with informatics for integrating biology and the bedside (i2b2).
Shawn N Murphy, Griffin Weber, Michael Mendis, Vivian Gainer, Henry C Chueh, Susanne Churchill, Isaac Kohane. J Am Med Inform Assoc 2010
511
7

Mapping ICD-10 and ICD-10-CM Codes to Phecodes: Workflow Development and Initial Evaluation.
Patrick Wu, Aliya Gifford, Xiangrui Meng, Xue Li, Harry Campbell, Tim Varley, Juan Zhao, Robert Carroll, Lisa Bastarache, Joshua C Denny,[...]. JMIR Med Inform 2019
70
10


Genome-wide study of resistant hypertension identified from electronic health records.
Logan Dumitrescu, Marylyn D Ritchie, Joshua C Denny, Nihal M El Rouby, Caitrin W McDonough, Yuki Bradford, Andrea H Ramirez, Suzette J Bielinski, Melissa A Basford, High Seng Chai,[...]. PLoS One 2017
21
28

Imputation and quality control steps for combining multiple genome-wide datasets.
Shefali S Verma, Mariza de Andrade, Gerard Tromp, Helena Kuivaniemi, Elizabeth Pugh, Bahram Namjou-Khales, Shubhabrata Mukherjee, Gail P Jarvik, Leah C Kottyan, Amber Burt,[...]. Front Genet 2014
78
7

Variants near FOXE1 are associated with hypothyroidism and other thyroid conditions: using electronic medical records for genome- and phenome-wide studies.
Joshua C Denny, Dana C Crawford, Marylyn D Ritchie, Suzette J Bielinski, Melissa A Basford, Yuki Bradford, High Seng Chai, Lisa Bastarache, Rebecca Zuvich, Peggy Peissig,[...]. Am J Hum Genet 2011
180
6

Distribution and clinical impact of functional variants in 50,726 whole-exome sequences from the DiscovEHR study.
Frederick E Dewey, Michael F Murray, John D Overton, Lukas Habegger, Joseph B Leader, Samantha N Fetterolf, Colm O'Dushlaine, Cristopher V Van Hout, Jeffrey Staples, Claudia Gonzaga-Jauregui,[...]. Science 2016
281
6


Development of phenotype algorithms using electronic medical records and incorporating natural language processing.
Katherine P Liao, Tianxi Cai, Guergana K Savova, Shawn N Murphy, Elizabeth W Karlson, Ashwin N Ananthakrishnan, Vivian S Gainer, Stanley Y Shaw, Zongqi Xia, Peter Szolovits,[...]. BMJ 2015
126
6

The Geisinger MyCode community health initiative: an electronic health record-linked biobank for precision medicine research.
David J Carey, Samantha N Fetterolf, F Daniel Davis, William A Faucett, H Lester Kirchner, Uyenlinh Mirshahi, Michael F Murray, Diane T Smelser, Glenn S Gerhard, David H Ledbetter. Genet Med 2016
162
6

The NHGRI-EBI GWAS Catalog of published genome-wide association studies, targeted arrays and summary statistics 2019.
Annalisa Buniello, Jacqueline A L MacArthur, Maria Cerezo, Laura W Harris, James Hayhurst, Cinzia Malangone, Aoife McMahon, Joannella Morales, Edward Mountjoy, Elliot Sollis,[...]. Nucleic Acids Res 2019
984
6


METAL: fast and efficient meta-analysis of genomewide association scans.
Cristen J Willer, Yun Li, Gonçalo R Abecasis. Bioinformatics 2010
6

Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.
Derek Klarin, Scott M Damrauer, Kelly Cho, Yan V Sun, Tanya M Teslovich, Jacqueline Honerlaw, David R Gagnon, Scott L DuVall, Jin Li, Gina M Peloso,[...]. Nat Genet 2018
202
6

Validation of a common data model for active safety surveillance research.
J Marc Overhage, Patrick B Ryan, Christian G Reich, Abraham G Hartzema, Paul E Stang. J Am Med Inform Assoc 2012
197
6

eMERGE Phenome-Wide Association Study (PheWAS) identifies clinical associations and pleiotropy for stop-gain variants.
Anurag Verma, Shefali S Verma, Sarah A Pendergrass, Dana C Crawford, David R Crosslin, Helena Kuivaniemi, William S Bush, Yuki Bradford, Iftikhar Kullo, Suzette J Bielinski,[...]. BMC Med Genomics 2016
20
25

PheWAS and Beyond: The Landscape of Associations with Medical Diagnoses and Clinical Measures across 38,662 Individuals from Geisinger.
Anurag Verma, Anastasia Lucas, Shefali S Verma, Yu Zhang, Navya Josyula, Anqa Khan, Dustin N Hartzel, Daniel R Lavage, Joseph Leader, Marylyn D Ritchie,[...]. Am J Hum Genet 2018
32
15

Finding the missing heritability of complex diseases.
Teri A Manolio, Francis S Collins, Nancy J Cox, David B Goldstein, Lucia A Hindorff, David J Hunter, Mark I McCarthy, Erin M Ramos, Lon R Cardon, Aravinda Chakravarti,[...]. Nature 2009
5

Genetic identification of familial hypercholesterolemia within a single U.S. health care system.
Noura S Abul-Husn, Kandamurugu Manickam, Laney K Jones, Eric A Wright, Dustin N Hartzel, Claudia Gonzaga-Jauregui, Colm O'Dushlaine, Joseph B Leader, H Lester Kirchner, D'Andra M Lindbuchler,[...]. Science 2016
209
5

The new NHGRI-EBI Catalog of published genome-wide association studies (GWAS Catalog).
Jacqueline MacArthur, Emily Bowler, Maria Cerezo, Laurent Gil, Peggy Hall, Emma Hastings, Heather Junkins, Aoife McMahon, Annalisa Milano, Joannella Morales,[...]. Nucleic Acids Res 2017
5


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.