A citation-based method for searching scientific literature

Patrick D Olson, Lisa J Kuechenmeister, Kelsi L Anderson, Sonja Daily, Karen E Beenken, Christelle M Roux, Michelle L Reniere, Tami L Lewis, William J Weiss, Mark Pulse, Phung Nguyen, Jerry W Simecka, John M Morrison, Khalid Sayood, Oluwatoyin A Asojo, Mark S Smeltzer, Eric P Skaar, Paul M Dunman. PLoS Pathog 2011
Times Cited: 47







List of co-cited articles
439 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Characterization of the Staphylococcus aureus heat shock, cold shock, stringent, and SOS responses and their effects on log-phase mRNA turnover.
Kelsi L Anderson, Corbette Roberts, Terrence Disz, Veronika Vonstein, Kaitlyn Hwang, Ross Overbeek, Patrick D Olson, Steven J Projan, Paul M Dunman. J Bacteriol 2006
184
31

Characterization of components of the Staphylococcus aureus mRNA degradosome holoenzyme-like complex.
Christelle M Roux, Jonathon P DeMuth, Paul M Dunman. J Bacteriol 2011
86
31

Staphylococcus aureus RNAIII coordinately represses the synthesis of virulence factors and the transcription regulator Rot by an antisense mechanism.
Sandrine Boisset, Thomas Geissmann, Eric Huntzinger, Pierre Fechter, Nadia Bendridi, Maria Possedko, Clément Chevalier, Anne Catherine Helfer, Yvonne Benito, Alain Jacquier,[...]. Genes Dev 2007
311
25

Novel activities of glycolytic enzymes in Bacillus subtilis: interactions with essential proteins involved in mRNA processing.
Fabian M Commichau, Fabian M Rothe, Christina Herzberg, Eva Wagner, Daniel Hellwig, Martin Lehnik-Habrink, Elke Hammer, Uwe Völker, Jörg Stülke. Mol Cell Proteomics 2009
179
25

The Staphylococcus aureus RNome and its commitment to virulence.
Brice Felden, François Vandenesch, Philippe Bouloc, Pascale Romby. PLoS Pathog 2011
91
21



A search for small noncoding RNAs in Staphylococcus aureus reveals a conserved sequence motif for regulation.
Thomas Geissmann, Clément Chevalier, Marie-Josée Cros, Sandrine Boisset, Pierre Fechter, Céline Noirot, Jacques Schrenzel, Patrice François, François Vandenesch, Christine Gaspin,[...]. Nucleic Acids Res 2009
155
19

Staphylococcus aureus RNAIII and the endoribonuclease III coordinately regulate spa gene expression.
Eric Huntzinger, Sandrine Boisset, Cosmin Saveanu, Yvonne Benito, Thomas Geissmann, Abdelkader Namane, Gérard Lina, Jerome Etienne, Bernard Ehresmann, Chantal Ehresmann,[...]. EMBO J 2005
244
19


RNase Y, a novel endoribonuclease, initiates riboswitch turnover in Bacillus subtilis.
Karen Shahbabian, Ailar Jamalli, Léna Zig, Harald Putzer. EMBO J 2009
173
17

Staphylococcus aureus RNAIII binds to two distant regions of coa mRNA to arrest translation and promote mRNA degradation.
Clément Chevalier, Sandrine Boisset, Cédric Romilly, Benoit Masquida, Pierre Fechter, Thomas Geissmann, François Vandenesch, Pascale Romby. PLoS Pathog 2010
82
17

Characterizing the effects of inorganic acid and alkaline shock on the Staphylococcus aureus transcriptome and messenger RNA turnover.
Kelsi L Anderson, Christelle M Roux, Matthew W Olson, Thanh T Luong, Chia Y Lee, Robert Olson, Paul M Dunman. FEMS Immunol Med Microbiol 2010
41
19

Genome-wide antisense transcription drives mRNA processing in bacteria.
Iñigo Lasa, Alejandro Toledo-Arana, Alexander Dobin, Maite Villanueva, Igor Ruiz de los Mozos, Marta Vergara-Irigaray, Víctor Segura, Delphine Fagegaltier, José R Penadés, Jaione Valle,[...]. Proc Natl Acad Sci U S A 2011
172
17

Inhibition of rot translation by RNAIII, a key feature of agr function.
Edward Geisinger, Rajan P Adhikari, Ruzhong Jin, Hope F Ross, Richard P Novick. Mol Microbiol 2006
164
14

Role of the accessory gene regulator (agr) in pathogenesis of staphylococcal osteomyelitis.
A F Gillaspy, S G Hickmon, R A Skinner, J R Thomas, C L Nelson, M S Smeltzer. Infect Immun 1995
289
14

5'-to-3' exoribonuclease activity in bacteria: role of RNase J1 in rRNA maturation and 5' stability of mRNA.
Nathalie Mathy, Lionel Bénard, Olivier Pellegrini, Roula Daou, Tingyi Wen, Ciarán Condon. Cell 2007
253
14

The RNA degradosome in Bacillus subtilis: identification of CshA as the major RNA helicase in the multiprotein complex.
Martin Lehnik-Habrink, Henrike Pförtner, Leonie Rempeters, Nico Pietack, Christina Herzberg, Jörg Stülke. Mol Microbiol 2010
103
14



Synthesis of staphylococcal virulence factors is controlled by a regulatory RNA molecule.
R P Novick, H F Ross, S J Projan, J Kornblum, B Kreiswirth, S Moghazeh. EMBO J 1993
737
14


Experimental discovery of small RNAs in Staphylococcus aureus reveals a riboregulator of central metabolism.
Chantal Bohn, Candice Rigoulay, Svetlana Chabelskaya, Cynthia M Sharma, Antonin Marchais, Patricia Skorski, Elise Borezée-Durant, Romain Barbet, Eric Jacquet, Annick Jacq,[...]. Nucleic Acids Res 2010
122
14

Small-molecule inhibitors of Staphylococcus aureus RnpA-mediated RNA turnover and tRNA processing.
Tess M Eidem, Nicole Lounsbury, John F Emery, Jeffrey Bulger, Andrew Smith, Magid Abou-Gharbia, Wayne Childers, Paul M Dunman. Antimicrob Agents Chemother 2015
14
50

Quorum sensing in staphylococci.
Richard P Novick, Edward Geisinger. Annu Rev Genet 2008
541
12

Bacillus subtilis ribonucleases J1 and J2 form a complex with altered enzyme behaviour.
Nathalie Mathy, Agnès Hébert, Peggy Mervelet, Lionel Bénard, Audrey Dorléans, Inés Li de la Sierra-Gallay, Philippe Noirot, Harald Putzer, Ciarán Condon. Mol Microbiol 2010
84
12

Ribonucleases J1 and J2: two novel endoribonucleases in B.subtilis with functional homology to E.coli RNase E.
Sergine Even, Olivier Pellegrini, Lena Zig, Valerie Labas, Joelle Vinh, Dominique Bréchemmier-Baey, Harald Putzer. Nucleic Acids Res 2005
231
12

A DEAD-box RNA helicase in the Escherichia coli RNA degradosome.
B Py, C F Higgins, H M Krisch, A J Carpousis. Nature 1996
462
12

Characterizing the effect of the Staphylococcus aureus virulence factor regulator, SarA, on log-phase mRNA half-lives.
Corbette Roberts, Kelsi L Anderson, Ellen Murphy, Steven J Projan, William Mounts, Barry Hurlburt, Mark Smeltzer, Ross Overbeek, Terrence Disz, Paul M Dunman. J Bacteriol 2006
76
12

Silkworm pathogenic bacteria infection model for identification of novel virulence genes.
Chikara Kaito, Kenji Kurokawa, Yasuhiko Matsumoto, Yutaka Terao, Shigetada Kawabata, Shigeyuki Hamada, Kazuhisa Sekimizu. Mol Microbiol 2005
126
12

RNase Y in Bacillus subtilis: a Natively disordered protein that is the functional equivalent of RNase E from Escherichia coli.
Martin Lehnik-Habrink, Joseph Newman, Fabian M Rothe, Alexandra S Solovyova, Cecilia Rodrigues, Christina Herzberg, Fabian M Commichau, Richard J Lewis, Jörg Stülke. J Bacteriol 2011
76
12

Hfq and its constellation of RNA.
Jörg Vogel, Ben F Luisi. Nat Rev Microbiol 2011
675
12

The structure of ribonuclease P protein from Staphylococcus aureus reveals a unique binding site for single-stranded RNA.
C Spitzfaden, N Nicholson, J J Jones, S Guth, R Lehr, C D Prescott, L A Hegg, D S Eggleston. J Mol Biol 2000
78
12

Cartography of methicillin-resistant S. aureus transcripts: detection, orientation and temporal expression during growth phase and stress conditions.
Marie Beaume, David Hernandez, Laurent Farinelli, Cécile Deluen, Patrick Linder, Christine Gaspin, Pascale Romby, Jacques Schrenzel, Patrice Francois. PLoS One 2010
95
12

Inhibition of RNase P RNA cleavage by aminoglycosides.
N E Mikkelsen, M Brännvall, A Virtanen, L A Kirsebom. Proc Natl Acad Sci U S A 1999
92
12

Biofilm dispersal of community-associated methicillin-resistant Staphylococcus aureus on orthopedic implant material.
Katherine J Lauderdale, Cheryl L Malone, Blaise R Boles, Jose Morcuende, Alexander R Horswill. J Orthop Res 2010
122
10

Invasive methicillin-resistant Staphylococcus aureus infections in the United States.
R Monina Klevens, Melissa A Morrison, Joelle Nadle, Susan Petit, Ken Gershman, Susan Ray, Lee H Harrison, Ruth Lynfield, Ghinwa Dumyati, John M Townes,[...]. JAMA 2007
10

Transcription profiling-based identification of Staphylococcus aureus genes regulated by the agr and/or sarA loci.
P M Dunman, E Murphy, S Haney, D Palacios, G Tucker-Kellogg, S Wu, E L Brown, R J Zagursky, D Shlaes, S J Projan. J Bacteriol 2001
433
10

A protein complex mediating mRNA degradation in Escherichia coli.
B Py, H Causton, E A Mudd, C F Higgins. Mol Microbiol 1994
201
10

Comprehensive identification of essential Staphylococcus aureus genes using Transposon-Mediated Differential Hybridisation (TMDH).
Roy R Chaudhuri, Andrew G Allen, Paul J Owen, Gil Shalom, Karl Stone, Marcus Harrison, Timothy A Burgis, Michael Lockyer, Jorge Garcia-Lara, Simon J Foster,[...]. BMC Genomics 2009
179
10

Single-pass classification of all noncoding sequences in a bacterial genome using phylogenetic profiles.
Antonin Marchais, Magali Naville, Chantal Bohn, Philippe Bouloc, Daniel Gautheret. Genome Res 2009
57
10

Regulation of virulence determinants in Staphylococcus aureus: complexity and applications.
Stéphane Bronner, Henri Monteil, Gilles Prévost. FEMS Microbiol Rev 2004
280
10

No detectable effect of RNA-binding protein Hfq absence in Staphylococcus aureus.
Chantal Bohn, Candice Rigoulay, Philippe Bouloc. BMC Microbiol 2007
124
10

Phosphodiesterase activity of CvfA is required for virulence in Staphylococcus aureus.
Makiko Nagata, Chikara Kaito, Kazuhisa Sekimizu. J Biol Chem 2008
50
10

The production of extracellular proteins is regulated by ribonuclease III via two different pathways in Staphylococcus aureus.
Yu Liu, Jie Dong, Na Wu, Yaping Gao, Xin Zhang, Chunhua Mu, Ningsheng Shao, Ming Fan, Guang Yang. PLoS One 2011
12
41

The modulation of Staphylococcus aureus mRNA turnover.
John M Morrison, Paul M Dunman. Future Microbiol 2011
14
35

Global gene expression in Staphylococcus aureus biofilms.
Karen E Beenken, Paul M Dunman, Fionnuala McAleese, Daphne Macapagal, Ellen Murphy, Steven J Projan, Jon S Blevins, Mark S Smeltzer. J Bacteriol 2004
392
10

Regulatory RNAs in bacteria.
Lauren S Waters, Gisela Storz. Cell 2009
10

Bacterial RNase P: a new view of an ancient enzyme.
Alexei V Kazantsev, Norman R Pace. Nat Rev Microbiol 2006
136
10

The group A Streptococcus small regulatory RNA FasX enhances streptokinase activity by increasing the stability of the ska mRNA transcript.
Esmeralda Ramirez-Peña, Jeanette Treviño, Zhuyun Liu, Nataly Perez, Paul Sumby. Mol Microbiol 2010
89
10


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.