A citation-based method for searching scientific literature

Lilach Moyal, Yaniv Lerenthal, Mali Gana-Weisz, Gilad Mass, Sairei So, Shih-Ya Wang, Berina Eppink, Young Min Chung, Gil Shalev, Efrat Shema, Dganit Shkedy, Nechama I Smorodinsky, Nicole van Vliet, Bernhard Kuster, Matthias Mann, Aaron Ciechanover, Jochen Dahm-Daphi, Roland Kanaar, Mickey C-T Hu, David J Chen, Moshe Oren, Yosef Shiloh. Mol Cell 2011
Times Cited: 275







List of co-cited articles
1450 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Regulation of homologous recombination by RNF20-dependent H2B ubiquitination.
Kyosuke Nakamura, Akihiro Kato, Junya Kobayashi, Hiromi Yanagihara, Shuichi Sakamoto, Douglas V N P Oliveira, Mikio Shimada, Hiroshi Tauchi, Hidekazu Suzuki, Satoshi Tashiro,[...]. Mol Cell 2011
249
57

Histone H2B ubiquitylation disrupts local and higher-order chromatin compaction.
Beat Fierz, Champak Chatterjee, Robert K McGinty, Maya Bar-Dagan, Daniel P Raleigh, Tom W Muir. Nat Chem Biol 2011
297
38

53BP1 is a reader of the DNA-damage-induced H2A Lys 15 ubiquitin mark.
Amélie Fradet-Turcotte, Marella D Canny, Cristina Escribano-Díaz, Alexandre Orthwein, Charles C Y Leung, Hao Huang, Marie-Claude Landry, Julianne Kitevski-LeBlanc, Sylvie M Noordermeer, Frank Sicheri,[...]. Nature 2013
450
28

RNF168 ubiquitinates K13-15 on H2A/H2AX to drive DNA damage signaling.
Francesca Mattiroli, Joseph H A Vissers, Willem J van Dijk, Pauline Ikpa, Elisabetta Citterio, Wim Vermeulen, Jurgen A Marteijn, Titia K Sixma. Cell 2012
420
27

Histone H2B monoubiquitination functions cooperatively with FACT to regulate elongation by RNA polymerase II.
Rushad Pavri, Bing Zhu, Guohong Li, Patrick Trojer, Subhrangsu Mandal, Ali Shilatifard, Danny Reinberg. Cell 2006
520
27

RNF168 binds and amplifies ubiquitin conjugates on damaged chromosomes to allow accumulation of repair proteins.
Carsten Doil, Niels Mailand, Simon Bekker-Jensen, Patrice Menard, Dorthe Helena Larsen, Rainer Pepperkok, Jan Ellenberg, Stephanie Panier, Daniel Durocher, Jiri Bartek,[...]. Cell 2009
668
23

The SAGA Deubiquitination Module Promotes DNA Repair and Class Switch Recombination through ATM and DNAPK-Mediated γH2AX Formation.
Shaliny Ramachandran, Dania Haddad, Conglei Li, Michael X Le, Alexanda K Ling, Clare C So, Rajeev M Nepal, Jennifer L Gommerman, Kefei Yu, Troy Ketela,[...]. Cell Rep 2016
66
34

Histone H1 couples initiation and amplification of ubiquitin signalling after DNA damage.
Tina Thorslund, Anita Ripplinger, Saskia Hoffmann, Thomas Wild, Michael Uckelmann, Bine Villumsen, Takeo Narita, Titia K Sixma, Chunaram Choudhary, Simon Bekker-Jensen,[...]. Nature 2015
242
21

Human BRCA1-BARD1 ubiquitin ligase activity counteracts chromatin barriers to DNA resection.
Ruth M Densham, Alexander J Garvin, Helen R Stone, Joanna Strachan, Robert A Baldock, Manuel Daza-Martin, Alice Fletcher, Sarah Blair-Reid, James Beesley, Balraj Johal,[...]. Nat Struct Mol Biol 2016
161
21

Monoubiquitinated H2B is associated with the transcribed region of highly expressed genes in human cells.
Neri Minsky, Efrat Shema, Yair Field, Meromit Schuster, Eran Segal, Moshe Oren. Nat Cell Biol 2008
260
21

RAD6-Mediated transcription-coupled H2B ubiquitylation directly stimulates H3K4 methylation in human cells.
Jaehoon Kim, Mohamed Guermah, Robert K McGinty, Jung-Shin Lee, Zhanyun Tang, Thomas A Milne, Ali Shilatifard, Tom W Muir, Robert G Roeder. Cell 2009
348
20

Orchestration of the DNA-damage response by the RNF8 ubiquitin ligase.
Nadine K Kolas, J Ross Chapman, Shinichiro Nakada, Jarkko Ylanko, Richard Chahwan, Frédéric D Sweeney, Stephanie Panier, Megan Mendez, Jan Wildenhain, Timothy M Thomson,[...]. Science 2007
683
19

The RIDDLE syndrome protein mediates a ubiquitin-dependent signaling cascade at sites of DNA damage.
Grant S Stewart, Stephanie Panier, Kelly Townsend, Abdallah K Al-Hakim, Nadine K Kolas, Edward S Miller, Shinichiro Nakada, Jarkko Ylanko, Signe Olivarius, Megan Mendez,[...]. Cell 2009
558
18

DNA double-stranded breaks induce histone H2AX phosphorylation on serine 139.
E P Rogakou, D R Pilch, A H Orr, V S Ivanova, W M Bonner. J Biol Chem 1998
18

The TIP60 Complex Regulates Bivalent Chromatin Recognition by 53BP1 through Direct H4K20me Binding and H2AK15 Acetylation.
Karine Jacquet, Amélie Fradet-Turcotte, Nikita Avvakumov, Jean-Philippe Lambert, Céline Roques, Raj K Pandita, Eric Paquet, Pauline Herst, Anne-Claude Gingras, Tej K Pandita,[...]. Mol Cell 2016
143
18


The DNA damage response: making it safe to play with knives.
Alberto Ciccia, Stephen J Elledge. Mol Cell 2010
17

RNF8 ubiquitylates histones at DNA double-strand breaks and promotes assembly of repair proteins.
Niels Mailand, Simon Bekker-Jensen, Helene Faustrup, Fredrik Melander, Jiri Bartek, Claudia Lukas, Jiri Lukas. Cell 2007
869
17

BRCA1 is a histone-H2A-specific ubiquitin ligase.
Reinhard Kalb, Donna L Mallery, Conor Larkin, Jeffrey T J Huang, Kevin Hiom. Cell Rep 2014
95
17

The DNA-damage response in human biology and disease.
Stephen P Jackson, Jiri Bartek. Nature 2009
17

Monoubiquitination of human histone H2B: the factors involved and their roles in HOX gene regulation.
Bing Zhu, Yong Zheng, Anh-Dung Pham, Subhrangsu S Mandal, Hediye Erdjument-Bromage, Paul Tempst, Danny Reinberg. Mol Cell 2005
347
17

Acetylation limits 53BP1 association with damaged chromatin to promote homologous recombination.
Jiangbo Tang, Nam Woo Cho, Gaofeng Cui, Erica M Manion, Niraj M Shanbhag, Maria Victoria Botuyan, Georges Mer, Roger A Greenberg. Nat Struct Mol Biol 2013
346
17

Comprehensive Mapping of Histone Modifications at DNA Double-Strand Breaks Deciphers Repair Pathway Chromatin Signatures.
Thomas Clouaire, Vincent Rocher, Anahita Lashgari, Coline Arnould, Marion Aguirrebengoa, Anna Biernacka, Magdalena Skrzypczak, François Aymard, Bernard Fongang, Norbert Dojer,[...]. Mol Cell 2018
130
17


Transcriptionally active chromatin recruits homologous recombination at DNA double-strand breaks.
François Aymard, Beatrix Bugler, Christine K Schmidt, Emmanuelle Guillou, Pierre Caron, Sébastien Briois, Jason S Iacovoni, Virginie Daburon, Kyle M Miller, Stephen P Jackson,[...]. Nat Struct Mol Biol 2014
389
16

H2B ubiquitylation plays a role in nucleosome dynamics during transcription elongation.
Alastair B Fleming, Cheng-Fu Kao, Cory Hillyer, Michael Pikaart, Mary Ann Osley. Mol Cell 2008
239
16

ATM-dependent chromatin changes silence transcription in cis to DNA double-strand breaks.
Niraj M Shanbhag, Ilona U Rafalska-Metcalf, Carlo Balane-Bolivar, Susan M Janicki, Roger A Greenberg. Cell 2010
506
15

ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage.
Shuhei Matsuoka, Bryan A Ballif, Agata Smogorzewska, E Robert McDonald, Kristen E Hurov, Ji Luo, Corey E Bakalarski, Zhenming Zhao, Nicole Solimini, Yaniv Lerenthal,[...]. Science 2007
15

The histone H2B-specific ubiquitin ligase RNF20/hBRE1 acts as a putative tumor suppressor through selective regulation of gene expression.
Efrat Shema, Itay Tirosh, Yael Aylon, Jing Huang, Chaoyang Ye, Neta Moskovits, Nina Raver-Shapira, Neri Minsky, Judith Pirngruber, Gabi Tarcic,[...]. Genes Dev 2008
197
15

Structural basis for the methylation state-specific recognition of histone H4-K20 by 53BP1 and Crb2 in DNA repair.
Maria Victoria Botuyan, Joseph Lee, Irene M Ward, Ja-Eun Kim, James R Thompson, Junjie Chen, Georges Mer. Cell 2006
723
15

USP3 counteracts RNF168 via deubiquitinating H2A and γH2AX at lysine 13 and 15.
Nidhi Sharma, Qianzheng Zhu, Gulzar Wani, Jingshan He, Qi-en Wang, Altaf A Wani. Cell Cycle 2014
77
18

The H2B deubiquitinase Usp22 promotes antibody class switch recombination by facilitating non-homologous end joining.
Conglei Li, Thergiory Irrazabal, Clare C So, Maribel Berru, Likun Du, Evelyn Lam, Alexanda K Ling, Jennifer L Gommerman, Qiang Pan-Hammarström, Alberto Martin. Nat Commun 2018
32
43

USP51 deubiquitylates H2AK13,15ub and regulates DNA damage response.
Zhiquan Wang, Honglian Zhang, Ji Liu, Abigael Cheruiyot, Jeong-Heon Lee, Tamas Ordog, Zhenkun Lou, Zhongsheng You, Zhiguo Zhang. Genes Dev 2016
54
25


RNF8 transduces the DNA-damage signal via histone ubiquitylation and checkpoint protein assembly.
Michael S Y Huen, Robert Grant, Isaac Manke, Kay Minn, Xiaochun Yu, Michael B Yaffe, Junjie Chen. Cell 2007
788
13

Bre1, an E3 ubiquitin ligase required for recruitment and substrate selection of Rad6 at a promoter.
Adam Wood, Nevan J Krogan, Jim Dover, Jessica Schneider, Jonathan Heidt, Marry Ann Boateng, Kimberly Dean, Ashkan Golshani, Yi Zhang, Jack F Greenblatt,[...]. Mol Cell 2003
387
13

The putative cancer stem cell marker USP22 is a subunit of the human SAGA complex required for activated transcription and cell-cycle progression.
Xiao-Yong Zhang, Maya Varthi, Stephen M Sykes, Charles Phillips, Claude Warzecha, Wenting Zhu, Anastasia Wyce, Alan W Thorne, Shelley L Berger, Steven B McMahon. Mol Cell 2008
308
13

Methylation of histone H3 by COMPASS requires ubiquitination of histone H2B by Rad6.
Jim Dover, Jessica Schneider, Mary Anne Tawiah-Boateng, Adam Wood, Kimberly Dean, Mark Johnston, Ali Shilatifard. J Biol Chem 2002
398
13

Transcriptional activation via sequential histone H2B ubiquitylation and deubiquitylation, mediated by SAGA-associated Ubp8.
Karl W Henry, Anastasia Wyce, Wan-Sheng Lo, Laura J Duggan, N C Tolga Emre, Cheng-Fu Kao, Lorraine Pillus, Ali Shilatifard, Mary Ann Osley, Shelley L Berger. Genes Dev 2003
522
13

Genome-wide function of H2B ubiquitylation in promoter and genic regions.
Kiran Batta, Zhenhai Zhang, Kuangyu Yen, David B Goffman, B Franklin Pugh. Genes Dev 2011
139
13

A macrohistone variant links dynamic chromatin compaction to BRCA1-dependent genome maintenance.
Simran Khurana, Michael J Kruhlak, Jeongkyu Kim, Andy D Tran, Jinping Liu, Katherine Nyswaner, Lei Shi, Parthav Jailwala, Myong-Hee Sung, Ofir Hakim,[...]. Cell Rep 2014
146
13

Histone H2A.Z controls a critical chromatin remodeling step required for DNA double-strand break repair.
Ye Xu, Marina K Ayrapetov, Chang Xu, Ozge Gursoy-Yuzugullu, Yiduo Hu, Brendan D Price. Mol Cell 2012
210
13

MMSET regulates histone H4K20 methylation and 53BP1 accumulation at DNA damage sites.
Huadong Pei, Lindsey Zhang, Kuntian Luo, Yuxin Qin, Marta Chesi, Frances Fei, P Leif Bergsagel, Liewei Wang, Zhongsheng You, Zhenkun Lou. Nature 2011
308
13


USP48 restrains resection by site-specific cleavage of the BRCA1 ubiquitin mark from H2A.
Michael Uckelmann, Ruth M Densham, Roy Baas, Herrie H K Winterwerp, Alexander Fish, Titia K Sixma, Joanna R Morris. Nat Commun 2018
52
25

BMI1 is recruited to DNA breaks and contributes to DNA damage-induced H2A ubiquitination and repair.
Vasudeva Ginjala, Karim Nacerddine, Atul Kulkarni, Jay Oza, Sarah J Hill, Ming Yao, Elisabetta Citterio, Maarten van Lohuizen, Shridar Ganesan. Mol Cell Biol 2011
187
13

RAP80 targets BRCA1 to specific ubiquitin structures at DNA damage sites.
Bijan Sobhian, Genze Shao, Dana R Lilli, Aedín C Culhane, Lisa A Moreau, Bing Xia, David M Livingston, Roger A Greenberg. Science 2007
527
12

MDC1 directly binds phosphorylated histone H2AX to regulate cellular responses to DNA double-strand breaks.
Manuel Stucki, Julie A Clapperton, Duaa Mohammad, Michael B Yaffe, Stephen J Smerdon, Stephen P Jackson. Cell 2005
772
12

A chromatin localization screen reveals poly (ADP ribose)-regulated recruitment of the repressive polycomb and NuRD complexes to sites of DNA damage.
Danny M Chou, Britt Adamson, Noah E Dephoure, Xu Tan, Amanda C Nottke, Kristen E Hurov, Steven P Gygi, Monica P Colaiácovo, Stephen J Elledge. Proc Natl Acad Sci U S A 2010
393
12

53BP1 inhibits homologous recombination in Brca1-deficient cells by blocking resection of DNA breaks.
Samuel F Bunting, Elsa Callén, Nancy Wong, Hua-Tang Chen, Federica Polato, Amanda Gunn, Anne Bothmer, Niklas Feldhahn, Oscar Fernandez-Capetillo, Liu Cao,[...]. Cell 2010
12


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.