A citation-based method for searching scientific literature

Akira Muto, Masamichi Ohkura, Tomoya Kotani, Shin-ichi Higashijima, Junichi Nakai, Koichi Kawakami. Proc Natl Acad Sci U S A 2011
Times Cited: 122







List of co-cited articles
951 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Optimization of a GCaMP calcium indicator for neural activity imaging.
Jasper Akerboom, Tsai-Wen Chen, Trevor J Wardill, Lin Tian, Jonathan S Marvin, Sevinç Mutlu, Nicole Carreras Calderón, Federico Esposti, Bart G Borghuis, Xiaonan Richard Sun,[...]. J Neurosci 2012
701
40

Imaging neural activity in worms, flies and mice with improved GCaMP calcium indicators.
Lin Tian, S Andrew Hires, Tianyi Mao, Daniel Huber, M Eugenia Chiappe, Sreekanth H Chalasani, Leopoldo Petreanu, Jasper Akerboom, Sean A McKinney, Eric R Schreiter,[...]. Nat Methods 2009
31

Ultrasensitive fluorescent proteins for imaging neuronal activity.
Tsai-Wen Chen, Trevor J Wardill, Yi Sun, Stefan R Pulver, Sabine L Renninger, Amy Baohan, Eric R Schreiter, Rex A Kerr, Michael B Orger, Vivek Jayaraman,[...]. Nature 2013
31

An expanded palette of genetically encoded Ca²⁺ indicators.
Yongxin Zhao, Satoko Araki, Jiahui Wu, Takayuki Teramoto, Yu-Fen Chang, Masahiro Nakano, Ahmed S Abdelfattah, Manabi Fujiwara, Takeshi Ishihara, Takeharu Nagai,[...]. Science 2011
736
28

Fluorescent indicators for Ca2+ based on green fluorescent proteins and calmodulin.
A Miyawaki, J Llopis, R Heim, J M McCaffery, J A Adams, M Ikura, R Y Tsien. Nature 1997
23

Imaging cellular signals in the heart in vivo: Cardiac expression of the high-signal Ca2+ indicator GCaMP2.
Yvonne N Tallini, Masamichi Ohkura, Bum-Rak Choi, Guangju Ji, Keiji Imoto, Robert Doran, Jane Lee, Patricia Plan, Jason Wilson, Hong-Bo Xin,[...]. Proc Natl Acad Sci U S A 2006
311
20

Real-time visualization of neuronal activity during perception.
Akira Muto, Masamichi Ohkura, Gembu Abe, Junichi Nakai, Koichi Kawakami. Curr Biol 2013
131
20

Genetically encoded calcium indicators for multi-color neural activity imaging and combination with optogenetics.
Jasper Akerboom, Nicole Carreras Calderón, Lin Tian, Sebastian Wabnig, Matthias Prigge, Johan Tolö, Andrew Gordus, Michael B Orger, Kristen E Severi, John J Macklin,[...]. Front Mol Neurosci 2013
388
20

Genetic dissection of neural circuits by Tol2 transposon-mediated Gal4 gene and enhancer trapping in zebrafish.
Kazuhide Asakawa, Maximiliano L Suster, Kanta Mizusawa, Saori Nagayoshi, Tomoya Kotani, Akihiro Urasaki, Yasuyuki Kishimoto, Masahiko Hibi, Koichi Kawakami. Proc Natl Acad Sci U S A 2008
344
19

Circular permutation and receptor insertion within green fluorescent proteins.
G S Baird, D A Zacharias, R Y Tsien. Proc Natl Acad Sci U S A 1999
588
18

Filtering of visual information in the tectum by an identified neural circuit.
Filippo Del Bene, Claire Wyart, Estuardo Robles, Amanda Tran, Loren Looger, Ethan K Scott, Ehud Y Isacoff, Herwig Baier. Science 2010
155
17

Genetically encoded green fluorescent Ca2+ indicators with improved detectability for neuronal Ca2+ signals.
Masamichi Ohkura, Takuya Sasaki, Junko Sadakari, Keiko Gengyo-Ando, Yuko Kagawa-Nagamura, Chiaki Kobayashi, Yuji Ikegaya, Junichi Nakai. PLoS One 2012
136
17

Circularly permuted green fluorescent proteins engineered to sense Ca2+.
T Nagai, A Sawano, E S Park, A Miyawaki. Proc Natl Acad Sci U S A 2001
678
16

Brain-wide neuronal dynamics during motor adaptation in zebrafish.
Misha B Ahrens, Jennifer M Li, Michael B Orger, Drew N Robson, Alexander F Schier, Florian Engert, Ruben Portugues. Nature 2012
335
13

Crystal structures of the GCaMP calcium sensor reveal the mechanism of fluorescence signal change and aid rational design.
Jasper Akerboom, Jonathan D Vélez Rivera, María M Rodríguez Guilbe, Elisa C Alfaro Malavé, Hector H Hernandez, Lin Tian, S Andrew Hires, Jonathan S Marvin, Loren L Looger, Eric R Schreiter. J Biol Chem 2009
155
13

Targeting neural circuitry in zebrafish using GAL4 enhancer trapping.
Ethan K Scott, Lindsay Mason, Aristides B Arrenberg, Limor Ziv, Nathan J Gosse, Tong Xiao, Neil C Chi, Kazuhide Asakawa, Koichi Kawakami, Herwig Baier. Nat Methods 2007
262
12

Genetically encoded bright Ca2+ probe applicable for dynamic Ca2+ imaging of dendritic spines.
Masamichi Ohkura, Masanori Matsuzaki, Haruo Kasai, Keiji Imoto, Junichi Nakai. Anal Chem 2005
88
13

Imaging neuronal activity during zebrafish behavior with a genetically encoded calcium indicator.
Shin-ichi Higashijima, Mark A Masino, Gail Mandel, Joseph R Fetcho. J Neurophysiol 2003
179
12

Escape behavior elicited by single, channelrhodopsin-2-evoked spikes in zebrafish somatosensory neurons.
Adam D Douglass, Sebastian Kraves, Karl Deisseroth, Alexander F Schier, Florian Engert. Curr Biol 2008
167
12

Expanded dynamic range of fluorescent indicators for Ca(2+) by circularly permuted yellow fluorescent proteins.
Takeharu Nagai, Shuichi Yamada, Takashi Tominaga, Michinori Ichikawa, Atsushi Miyawaki. Proc Natl Acad Sci U S A 2004
728
12

An optimized fluorescent probe for visualizing glutamate neurotransmission.
Jonathan S Marvin, Bart G Borghuis, Lin Tian, Joseph Cichon, Mark T Harnett, Jasper Akerboom, Andrew Gordus, Sabine L Renninger, Tsai-Wen Chen, Cornelia I Bargmann,[...]. Nat Methods 2013
443
12

High-fidelity optical reporting of neuronal electrical activity with an ultrafast fluorescent voltage sensor.
François St-Pierre, Jesse D Marshall, Ying Yang, Yiyang Gong, Mark J Schnitzer, Michael Z Lin. Nat Neurosci 2014
246
12

Optogenetic dissection of a behavioural module in the vertebrate spinal cord.
Claire Wyart, Filippo Del Bene, Erica Warp, Ethan K Scott, Dirk Trauner, Herwig Baier, Ehud Y Isacoff. Nature 2009
261
11

Spontaneous network activity visualized by ultrasensitive Ca(2+) indicators, yellow Cameleon-Nano.
Kazuki Horikawa, Yoshiyuki Yamada, Tomoki Matsuda, Kentarou Kobayashi, Mitsuhiro Hashimoto, Toru Matsu-ura, Atsushi Miyawaki, Takayuki Michikawa, Katsuhiko Mikoshiba, Takeharu Nagai. Nat Methods 2010
231
11

nacre encodes a zebrafish microphthalmia-related protein that regulates neural-crest-derived pigment cell fate.
J A Lister, C P Robertson, T Lepage, S L Johnson, D W Raible. Development 1999
518
11

A genetically encoded calcium indicator for chronic in vivo two-photon imaging.
Marco Mank, Alexandre Ferrão Santos, Stephan Direnberger, Thomas D Mrsic-Flogel, Sonja B Hofer, Valentin Stein, Thomas Hendel, Dierk F Reiff, Christiaan Levelt, Alexander Borst,[...]. Nat Methods 2008
316
11

Fast GCaMPs for improved tracking of neuronal activity.
Xiaonan R Sun, Aleksandra Badura, Diego A Pacheco, Laura A Lynch, Eve R Schneider, Matthew P Taylor, Ian B Hogue, Lynn W Enquist, Mala Murthy, Samuel S-H Wang. Nat Commun 2013
77
14

Targeted gene expression by the Gal4-UAS system in zebrafish.
Kazuhide Asakawa, Koichi Kawakami. Dev Growth Differ 2008
116
10

Millisecond-timescale, genetically targeted optical control of neural activity.
Edward S Boyden, Feng Zhang, Ernst Bamberg, Georg Nagel, Karl Deisseroth. Nat Neurosci 2005
10

zTrap: zebrafish gene trap and enhancer trap database.
Koichi Kawakami, Gembu Abe, Tokuko Asada, Kazuhide Asakawa, Ryuichi Fukuda, Aki Ito, Pradeep Lal, Naoko Mouri, Akira Muto, Maximilliano L Suster,[...]. BMC Dev Biol 2010
99
10

An improved genetically encoded red fluorescent Ca2+ indicator for detecting optically evoked action potentials.
Masamichi Ohkura, Takuya Sasaki, Chiaki Kobayashi, Yuji Ikegaya, Junichi Nakai. PLoS One 2012
86
11

Emergence of patterned activity in the developing zebrafish spinal cord.
Erica Warp, Gautam Agarwal, Claire Wyart, Drew Friedmann, Claire S Oldfield, Alden Conner, Filippo Del Bene, Aristides B Arrenberg, Herwig Baier, Ehud Y Isacoff. Curr Biol 2012
74
13

Optimized ratiometric calcium sensors for functional in vivo imaging of neurons and T lymphocytes.
Thomas Thestrup, Julia Litzlbauer, Ingo Bartholomäus, Marsilius Mues, Luigi Russo, Hod Dana, Yuri Kovalchuk, Yajie Liang, Georgios Kalamakis, Yvonne Laukat,[...]. Nat Methods 2014
181
10

A genetically encoded reporter of synaptic activity in vivo.
Elena Dreosti, Benjamin Odermatt, Mario M Dorostkar, Leon Lagnado. Nat Methods 2009
143
9

Dynamic and quantitative Ca2+ measurements using improved cameleons.
A Miyawaki, O Griesbeck, R Heim, R Y Tsien. Proc Natl Acad Sci U S A 1999
604
9

Optical control of zebrafish behavior with halorhodopsin.
Aristides B Arrenberg, Filippo Del Bene, Herwig Baier. Proc Natl Acad Sci U S A 2009
159
9

Improved orange and red Ca²± indicators and photophysical considerations for optogenetic applications.
Jiahui Wu, Lin Liu, Tomoki Matsuda, Yongxin Zhao, Aleksander Rebane, Mikhail Drobizhev, Yu-Fen Chang, Satoko Araki, Yoshiyuki Arai, Kelsey March,[...]. ACS Chem Neurosci 2013
123
9

Transparent adult zebrafish as a tool for in vivo transplantation analysis.
Richard Mark White, Anna Sessa, Christopher Burke, Teresa Bowman, Jocelyn LeBlanc, Craig Ceol, Caitlin Bourque, Michael Dovey, Wolfram Goessling, Caroline Erter Burns,[...]. Cell Stem Cell 2008
691
9

Whole-brain functional imaging at cellular resolution using light-sheet microscopy.
Misha B Ahrens, Michael B Orger, Drew N Robson, Jennifer M Li, Philipp J Keller. Nat Methods 2013
591
9

Single action potentials and subthreshold electrical events imaged in neurons with a fluorescent protein voltage probe.
Lei Jin, Zhou Han, Jelena Platisa, Julian R A Wooltorton, Lawrence B Cohen, Vincent A Pieribone. Neuron 2012
272
9

Rational design of a high-affinity, fast, red calcium indicator R-CaMP2.
Masatoshi Inoue, Atsuya Takeuchi, Shin-ichiro Horigane, Masamichi Ohkura, Keiko Gengyo-Ando, Hajime Fujii, Satoshi Kamijo, Sayaka Takemoto-Kimura, Masanobu Kano, Junichi Nakai,[...]. Nat Methods 2015
142
9

Sensitive red protein calcium indicators for imaging neural activity.
Hod Dana, Boaz Mohar, Yi Sun, Sujatha Narayan, Andrew Gordus, Jeremy P Hasseman, Getahun Tsegaye, Graham T Holt, Amy Hu, Deepika Walpita,[...]. Elife 2016
359
9

A topographic map of recruitment in spinal cord.
David L McLean, Jingyi Fan, Shin-ichi Higashijima, Melina E Hale, Joseph R Fetcho. Nature 2007
228
8

Transactivation from Gal4-VP16 transgenic insertions for tissue-specific cell labeling and ablation in zebrafish.
Jon M Davison, Courtney M Akitake, Mary G Goll, Jerry M Rhee, Nathan Gosse, Herwig Baier, Marnie E Halpern, Steven D Leach, Michael J Parsons. Dev Biol 2007
237
8

Reducing the environmental sensitivity of yellow fluorescent protein. Mechanism and applications.
O Griesbeck, G S Baird, R E Campbell, D A Zacharias, R Y Tsien. J Biol Chem 2001
740
8

A FRET-based calcium biosensor with fast signal kinetics and high fluorescence change.
Marco Mank, Dierk F Reiff, Nicola Heim, Michael W Friedrich, Alexander Borst, Oliver Griesbeck. Biophys J 2006
204
8


Structural basis for calcium sensing by GCaMP2.
Qi Wang, Bo Shui, Michael I Kotlikoff, Holger Sondermann. Structure 2008
110
8

Imaging calcium in neurons.
Christine Grienberger, Arthur Konnerth. Neuron 2012
565
8


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.