A citation-based method for searching scientific literature

Bart G Borghuis, Lin Tian, Ying Xu, Sergei S Nikonov, Noga Vardi, Boris V Zemelman, Loren L Looger. J Neurosci 2011
Times Cited: 62







List of co-cited articles
541 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Imaging neural activity in worms, flies and mice with improved GCaMP calcium indicators.
Lin Tian, S Andrew Hires, Tianyi Mao, Daniel Huber, M Eugenia Chiappe, Sreekanth H Chalasani, Leopoldo Petreanu, Jasper Akerboom, Sean A McKinney, Eric R Schreiter,[...]. Nat Methods 2009
43

Ultrasensitive fluorescent proteins for imaging neuronal activity.
Tsai-Wen Chen, Trevor J Wardill, Yi Sun, Stefan R Pulver, Sabine L Renninger, Amy Baohan, Eric R Schreiter, Rex A Kerr, Michael B Orger, Vivek Jayaraman,[...]. Nature 2013
20

An expanded palette of genetically encoded Ca²⁺ indicators.
Yongxin Zhao, Satoko Araki, Jiahui Wu, Takayuki Teramoto, Yu-Fen Chang, Masahiro Nakano, Ahmed S Abdelfattah, Manabi Fujiwara, Takeshi Ishihara, Takeharu Nagai,[...]. Science 2011
730
17

Functional imaging of hippocampal place cells at cellular resolution during virtual navigation.
Daniel A Dombeck, Christopher D Harvey, Lin Tian, Loren L Looger, David W Tank. Nat Neurosci 2010
391
17


ScanImage: flexible software for operating laser scanning microscopes.
Thomas A Pologruto, Bernardo L Sabatini, Karel Svoboda. Biomed Eng Online 2003
673
17

A robust and high-throughput Cre reporting and characterization system for the whole mouse brain.
Linda Madisen, Theresa A Zwingman, Susan M Sunkin, Seung Wook Oh, Hatim A Zariwala, Hong Gu, Lydia L Ng, Richard D Palmiter, Michael J Hawrylycz, Allan R Jones,[...]. Nat Neurosci 2010
16


Optimization of a GCaMP calcium indicator for neural activity imaging.
Jasper Akerboom, Tsai-Wen Chen, Trevor J Wardill, Lin Tian, Jonathan S Marvin, Sevinç Mutlu, Nicole Carreras Calderón, Federico Esposti, Bart G Borghuis, Xiaonan Richard Sun,[...]. J Neurosci 2012
698
16

Molecular identification of a retinal cell type that responds to upward motion.
In-Jung Kim, Yifeng Zhang, Masahito Yamagata, Markus Meister, Joshua R Sanes. Nature 2008
269
14

Imaging cellular signals in the heart in vivo: Cardiac expression of the high-signal Ca2+ indicator GCaMP2.
Yvonne N Tallini, Masamichi Ohkura, Bum-Rak Choi, Guangju Ji, Keiji Imoto, Robert Doran, Jane Lee, Patricia Plan, Jason Wilson, Hong-Bo Xin,[...]. Proc Natl Acad Sci U S A 2006
311
14

A Cre-dependent GCaMP3 reporter mouse for neuronal imaging in vivo.
Hatim A Zariwala, Bart G Borghuis, Tycho M Hoogland, Linda Madisen, Lin Tian, Chris I De Zeeuw, Hongkui Zeng, Loren L Looger, Karel Svoboda, Tsai-Wen Chen. J Neurosci 2012
236
14


Approach sensitivity in the retina processed by a multifunctional neural circuit.
Thomas A Münch, Rava Azeredo da Silveira, Sandra Siegert, Tim James Viney, Gautam B Awatramani, Botond Roska. Nat Neurosci 2009
186
12

Expanded dynamic range of fluorescent indicators for Ca(2+) by circularly permuted yellow fluorescent proteins.
Takeharu Nagai, Shuichi Yamada, Takashi Tominaga, Michinori Ichikawa, Atsushi Miyawaki. Proc Natl Acad Sci U S A 2004
725
12

Fluorescent indicators for Ca2+ based on green fluorescent proteins and calmodulin.
A Miyawaki, J Llopis, R Heim, J M McCaffery, J A Adams, M Ikura, R Y Tsien. Nature 1997
12

Genetic visualization with an improved GCaMP calcium indicator reveals spatiotemporal activation of the spinal motor neurons in zebrafish.
Akira Muto, Masamichi Ohkura, Tomoya Kotani, Shin-ichi Higashijima, Junichi Nakai, Koichi Kawakami. Proc Natl Acad Sci U S A 2011
121
12

A genetically encoded calcium indicator for chronic in vivo two-photon imaging.
Marco Mank, Alexandre Ferrão Santos, Stephan Direnberger, Thomas D Mrsic-Flogel, Sonja B Hofer, Valentin Stein, Thomas Hendel, Dierk F Reiff, Christiaan Levelt, Alexander Borst,[...]. Nat Methods 2008
314
12

Adaptive optics scanning laser ophthalmoscopy.
Austin Roorda, Fernando Romero-Borja, William Donnelly Iii, Hope Queener, Thomas Hebert, Melanie Campbell. Opt Express 2002
497
11



Directionally selective calcium signals in dendrites of starburst amacrine cells.
Thomas Euler, Peter B Detwiler, Winfried Denk. Nature 2002
352
11

Functional fluorescent Ca2+ indicator proteins in transgenic mice under TET control.
Mazahir T Hasan, Rainer W Friedrich, Thomas Euler, Matthew E Larkum, Günter Giese, Matthias Both, Jens Duebel, Jack Waters, Hermann Bujard, Oliver Griesbeck,[...]. PLoS Biol 2004
181
11

Characterization and subcellular targeting of GCaMP-type genetically-encoded calcium indicators.
Tianyi Mao, Daniel H O'Connor, Volker Scheuss, Junichi Nakai, Karel Svoboda. PLoS One 2008
106
11

Imaging the response of the retina to electrical stimulation with genetically encoded calcium indicators.
Andrew C Weitz, Matthew R Behrend, Nan Sook Lee, Ronald L Klein, Vince A Chiodo, William W Hauswirth, Mark S Humayun, James D Weiland, Robert H Chow. J Neurophysiol 2013
32
21

An optimized fluorescent probe for visualizing glutamate neurotransmission.
Jonathan S Marvin, Bart G Borghuis, Lin Tian, Joseph Cichon, Mark T Harnett, Jasper Akerboom, Andrew Gordus, Sabine L Renninger, Tsai-Wen Chen, Cornelia I Bargmann,[...]. Nat Methods 2013
436
11

In vivo fluorescence imaging of primate retinal ganglion cells and retinal pigment epithelial cells.
Daniel C Gray, William Merigan, Jessica I Wolfing, Bernard P Gee, Jason Porter, Alfredo Dubra, Ted H Twietmeyer, Kamran Ahamd, Remy Tumbar, Fred Reinholz,[...]. Opt Express 2006
100
9

Physiological features of the S- and M-cone photoreceptors of wild-type mice from single-cell recordings.
Sergei S Nikonov, Roman Kholodenko, Janis Lem, Edward N Pugh. J Gen Physiol 2006
207
9

Disinhibition combines with excitation to extend the operating range of the OFF visual pathway in daylight.
Michael B Manookin, Deborah Langrill Beaudoin, Zachary Raymond Ernst, Leigh J Flagel, Jonathan B Demb. J Neurosci 2008
161
9

Receptive field properties of ON- and OFF-ganglion cells in the mouse retina.
Michiel van Wyk, Heinz Wässle, W Rowland Taylor. Vis Neurosci 2009
108
9

Engineering and characterization of a superfolder green fluorescent protein.
Jean-Denis Pédelacq, Stéphanie Cabantous, Timothy Tran, Thomas C Terwilliger, Geoffrey S Waldo. Nat Biotechnol 2006
9

Crystal structures of the GCaMP calcium sensor reveal the mechanism of fluorescence signal change and aid rational design.
Jasper Akerboom, Jonathan D Vélez Rivera, María M Rodríguez Guilbe, Elisa C Alfaro Malavé, Hector H Hernandez, Lin Tian, S Andrew Hires, Jonathan S Marvin, Loren L Looger, Eric R Schreiter. J Biol Chem 2009
154
9

Ca2+ indicators based on computationally redesigned calmodulin-peptide pairs.
Amy E Palmer, Marta Giacomello, Tanja Kortemme, S Andrew Hires, Varda Lev-Ram, David Baker, Roger Y Tsien. Chem Biol 2006
344
9

Neural activity in barrel cortex underlying vibrissa-based object localization in mice.
Daniel H O'Connor, Simon P Peron, Daniel Huber, Karel Svoboda. Neuron 2010
283
9

New rabies virus variants for monitoring and manipulating activity and gene expression in defined neural circuits.
Fumitaka Osakada, Takuma Mori, Ali H Cetin, James H Marshel, Beatriz Virgen, Edward M Callaway. Neuron 2011
189
9

Fluorescence changes of genetic calcium indicators and OGB-1 correlated with neural activity and calcium in vivo and in vitro.
Thomas Hendel, Marco Mank, Bettina Schnell, Oliver Griesbeck, Alexander Borst, Dierk F Reiff. J Neurosci 2008
119
9

Monitoring neural activity and [Ca2+] with genetically encoded Ca2+ indicators.
Thomas A Pologruto, Ryohei Yasuda, Karel Svoboda. J Neurosci 2004
163
9

Genetically encoded calcium indicators.
Marco Mank, Oliver Griesbeck. Chem Rev 2008
170
9

In vivo evidence that retinal bipolar cells generate spikes modulated by light.
Elena Dreosti, Federico Esposti, Tom Baden, Leon Lagnado. Nat Neurosci 2011
43
13

Adaptive optics retinal imaging in the living mouse eye.
Ying Geng, Alfredo Dubra, Lu Yin, William H Merigan, Robin Sharma, Richard T Libby, David R Williams. Biomed Opt Express 2012
75
9

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
9

A resource of Cre driver lines for genetic targeting of GABAergic neurons in cerebral cortex.
Hiroki Taniguchi, Miao He, Priscilla Wu, Sangyong Kim, Raehum Paik, Ken Sugino, Duda Kvitsiani, Yu Fu, Jiangteng Lu, Ying Lin,[...]. Neuron 2011
952
9

Production and characterization of adeno-associated viral vectors.
Joshua C Grieger, Vivian W Choi, R Jude Samulski. Nat Protoc 2006
337
9

The functional diversity of retinal ganglion cells in the mouse.
Tom Baden, Philipp Berens, Katrin Franke, Miroslav Román Rosón, Matthias Bethge, Thomas Euler. Nature 2016
369
9

Architecture and activity-mediated refinement of axonal projections from a mosaic of genetically identified retinal ganglion cells.
Andrew D Huberman, Mihai Manu, Selina M Koch, Michael W Susman, Amanda Brosius Lutz, Erik M Ullian, Stephen A Baccus, Ben A Barres. Neuron 2008
194
8

Unique topographic separation of two spectral classes of cones in the mouse retina.
A Szél, P Röhlich, A R Caffé, B Juliusson, G Aguirre, T Van Veen. J Comp Neurol 1992
200
8

Development of asymmetric inhibition underlying direction selectivity in the retina.
Wei Wei, Aaron M Hamby, Kaili Zhou, Marla B Feller. Nature 2011
110
8

Dark light, rod saturation, and the absolute and incremental sensitivity of mouse cone vision.
Frank Naarendorp, Tricia M Esdaille, Serenity M Banden, John Andrews-Labenski, Owen P Gross, Edward N Pugh. J Neurosci 2010
95
8




Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.