A citation-based method for searching scientific literature

Keisuke Okita, Yasuko Matsumura, Yoshiko Sato, Aki Okada, Asuka Morizane, Satoshi Okamoto, Hyenjong Hong, Masato Nakagawa, Koji Tanabe, Ken-ichi Tezuka, Toshiyuki Shibata, Takahiro Kunisada, Masayo Takahashi, Jun Takahashi, Hiroh Saji, Shinya Yamanaka. Nat Methods 2011
Times Cited: 1213







List of co-cited articles
403 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Induction of pluripotent stem cells from adult human fibroblasts by defined factors.
Kazutoshi Takahashi, Koji Tanabe, Mari Ohnuki, Megumi Narita, Tomoko Ichisaka, Kiichiro Tomoda, Shinya Yamanaka. Cell 2007
38


Induced pluripotent stem cell lines derived from human somatic cells.
Junying Yu, Maxim A Vodyanik, Kim Smuga-Otto, Jessica Antosiewicz-Bourget, Jennifer L Frane, Shulan Tian, Jeff Nie, Gudrun A Jonsdottir, Victor Ruotti, Ron Stewart,[...]. Science 2007
15

Efficient induction of transgene-free human pluripotent stem cells using a vector based on Sendai virus, an RNA virus that does not integrate into the host genome.
Noemi Fusaki, Hiroshi Ban, Akiyo Nishiyama, Koichi Saeki, Mamoru Hasegawa. Proc Jpn Acad Ser B Phys Biol Sci 2009
867
14

Highly efficient reprogramming to pluripotency and directed differentiation of human cells with synthetic modified mRNA.
Luigi Warren, Philip D Manos, Tim Ahfeldt, Yuin-Han Loh, Hu Li, Frank Lau, Wataru Ebina, Pankaj K Mandal, Zachary D Smith, Alexander Meissner,[...]. Cell Stem Cell 2010
12

An efficient nonviral method to generate integration-free human-induced pluripotent stem cells from cord blood and peripheral blood cells.
Keisuke Okita, Tatsuya Yamakawa, Yasuko Matsumura, Yoshiko Sato, Naoki Amano, Akira Watanabe, Naoki Goshima, Shinya Yamanaka. Stem Cells 2013
433
10

Human induced pluripotent stem cells free of vector and transgene sequences.
Junying Yu, Kejin Hu, Kim Smuga-Otto, Shulan Tian, Ron Stewart, Igor I Slukvin, James A Thomson. Science 2009
9

Autologous Induced Stem-Cell-Derived Retinal Cells for Macular Degeneration.
Michiko Mandai, Akira Watanabe, Yasuo Kurimoto, Yasuhiko Hirami, Chikako Morinaga, Takashi Daimon, Masashi Fujihara, Hiroshi Akimaru, Noriko Sakai, Yumiko Shibata,[...]. N Engl J Med 2017
677
9

Embryonic stem cell lines derived from human blastocysts.
J A Thomson, J Itskovitz-Eldor, S S Shapiro, M A Waknitz, J J Swiergiel, V S Marshall, J M Jones. Science 1998
8

A comparison of non-integrating reprogramming methods.
Thorsten M Schlaeger, Laurence Daheron, Thomas R Brickler, Samuel Entwisle, Karrie Chan, Amelia Cianci, Alexander DeVine, Andrew Ettenger, Kelly Fitzgerald, Michelle Godfrey,[...]. Nat Biotechnol 2015
299
8


Highly efficient neural conversion of human ES and iPS cells by dual inhibition of SMAD signaling.
Stuart M Chambers, Christopher A Fasano, Eirini P Papapetrou, Mark Tomishima, Michel Sadelain, Lorenz Studer. Nat Biotechnol 2009
8

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
7

Induced pluripotent stem cells generated without viral integration.
Matthias Stadtfeld, Masaki Nagaya, Jochen Utikal, Gordon Weir, Konrad Hochedlinger. Science 2008
7

Chemically defined conditions for human iPSC derivation and culture.
Guokai Chen, Daniel R Gulbranson, Zhonggang Hou, Jennifer M Bolin, Victor Ruotti, Mitchell D Probasco, Kimberly Smuga-Otto, Sara E Howden, Nicole R Diol, Nicholas E Propson,[...]. Nat Methods 2011
846
6

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
6

Generation of cerebral organoids from human pluripotent stem cells.
Madeline A Lancaster, Juergen A Knoblich. Nat Protoc 2014
624
6

Cerebral organoids model human brain development and microcephaly.
Madeline A Lancaster, Magdalena Renner, Carol-Anne Martin, Daniel Wenzel, Louise S Bicknell, Matthew E Hurles, Tessa Homfray, Josef M Penninger, Andrew P Jackson, Juergen A Knoblich. Nature 2013
6

Targeted Disruption of HLA Genes via CRISPR-Cas9 Generates iPSCs with Enhanced Immune Compatibility.
Huaigeng Xu, Bo Wang, Miyuki Ono, Akihiro Kagita, Kaho Fujii, Noriko Sasakawa, Tatsuki Ueda, Peter Gee, Misato Nishikawa, Masaki Nomura,[...]. Cell Stem Cell 2019
175
6

Pluripotent stem cells induced from mouse somatic cells by small-molecule compounds.
Pingping Hou, Yanqin Li, Xu Zhang, Chun Liu, Jingyang Guan, Honggang Li, Ting Zhao, Junqing Ye, Weifeng Yang, Kang Liu,[...]. Science 2013
823
6

Integrating single-cell transcriptomic data across different conditions, technologies, and species.
Andrew Butler, Paul Hoffman, Peter Smibert, Efthymia Papalexi, Rahul Satija. Nat Biotechnol 2018
6

Induced pluripotent stem cell technology: a decade of progress.
Yanhong Shi, Haruhisa Inoue, Joseph C Wu, Shinya Yamanaka. Nat Rev Drug Discov 2017
605
6

Multiplex genome engineering using CRISPR/Cas systems.
Le Cong, F Ann Ran, David Cox, Shuailiang Lin, Robert Barretto, Naomi Habib, Patrick D Hsu, Xuebing Wu, Wenyan Jiang, Luciano A Marraffini,[...]. Science 2013
5

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.
Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander,[...]. Proc Natl Acad Sci U S A 2005
5

Generation of functional human pancreatic β cells in vitro.
Felicia W Pagliuca, Jeffrey R Millman, Mads Gürtler, Michael Segel, Alana Van Dervort, Jennifer Hyoje Ryu, Quinn P Peterson, Dale Greiner, Douglas A Melton. Cell 2014
5

A novel efficient feeder-free culture system for the derivation of human induced pluripotent stem cells.
Masato Nakagawa, Yukimasa Taniguchi, Sho Senda, Nanako Takizawa, Tomoko Ichisaka, Kanako Asano, Asuka Morizane, Daisuke Doi, Jun Takahashi, Masatoshi Nishizawa,[...]. Sci Rep 2014
334
5

Organoid single-cell genomic atlas uncovers human-specific features of brain development.
Sabina Kanton, Michael James Boyle, Zhisong He, Malgorzata Santel, Anne Weigert, Fátima Sanchís-Calleja, Patricia Guijarro, Leila Sidow, Jonas Simon Fleck, Dingding Han,[...]. Nature 2019
207
5

Cell stress in cortical organoids impairs molecular subtype specification.
Aparna Bhaduri, Madeline G Andrews, Walter Mancia Leon, Diane Jung, David Shin, Denise Allen, Dana Jung, Galina Schmunk, Maximilian Haeussler, Jahan Salma,[...]. Nature 2020
164
5

Generation of human induced pluripotent stem cells by direct delivery of reprogramming proteins.
Dohoon Kim, Chun-Hyung Kim, Jung-Il Moon, Young-Gie Chung, Mi-Yoon Chang, Baek-Soo Han, Sanghyeok Ko, Eungi Yang, Kwang Yul Cha, Robert Lanza,[...]. Cell Stem Cell 2009
5

Passaging and colony expansion of human pluripotent stem cells by enzyme-free dissociation in chemically defined culture conditions.
Jeanette Beers, Daniel R Gulbranson, Nicole George, Lauren I Siniscalchi, Jeffrey Jones, James A Thomson, Guokai Chen. Nat Protoc 2012
219
5

DNA methylation dynamics in human induced pluripotent stem cells over time.
Koichiro Nishino, Masashi Toyoda, Mayu Yamazaki-Inoue, Yoshihiro Fukawatase, Emi Chikazawa, Hironari Sakaguchi, Hidenori Akutsu, Akihiro Umezawa. PLoS Genet 2011
206
4

Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells.
Ryan Lister, Mattia Pelizzola, Yasuyuki S Kida, R David Hawkins, Joseph R Nery, Gary Hon, Jessica Antosiewicz-Bourget, Ronan O'Malley, Rosa Castanon, Sarit Klugman,[...]. Nature 2011
4

Development of defective and persistent Sendai virus vector: a unique gene delivery/expression system ideal for cell reprogramming.
Ken Nishimura, Masayuki Sano, Manami Ohtaka, Birei Furuta, Yoko Umemura, Yoshiro Nakajima, Yuzuru Ikehara, Toshihiro Kobayashi, Hiroaki Segawa, Satoko Takayasu,[...]. J Biol Chem 2011
233
4

A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity.
Martin Jinek, Krzysztof Chylinski, Ines Fonfara, Michael Hauer, Jennifer A Doudna, Emmanuelle Charpentier. Science 2012
4


Allogeneic transplantation of iPS cell-derived cardiomyocytes regenerates primate hearts.
Yuji Shiba, Toshihito Gomibuchi, Tatsuichiro Seto, Yuko Wada, Hajime Ichimura, Yuki Tanaka, Tatsuki Ogasawara, Kenji Okada, Naoko Shiba, Kengo Sakamoto,[...]. Nature 2016
386
4

Negligible immunogenicity of terminally differentiated cells derived from induced pluripotent or embryonic stem cells.
Ryoko Araki, Masahiro Uda, Yuko Hoki, Misato Sunayama, Miki Nakamura, Shunsuke Ando, Mayumi Sugiura, Hisashi Ideno, Akemi Shimada, Akira Nifuji,[...]. Nature 2013
336
4

Generating an iPSC bank for HLA-matched tissue transplantation based on known donor and recipient HLA types.
Craig J Taylor, Sarah Peacock, Afzal N Chaudhry, J Andrew Bradley, Eleanor M Bolton. Cell Stem Cell 2012
241
4

Genome engineering using the CRISPR-Cas9 system.
F Ann Ran, Patrick D Hsu, Jason Wright, Vineeta Agarwala, David A Scott, Feng Zhang. Nat Protoc 2013
4

Cell diversity and network dynamics in photosensitive human brain organoids.
Giorgia Quadrato, Tuan Nguyen, Evan Z Macosko, John L Sherwood, Sung Min Yang, Daniel R Berger, Natalie Maria, Jorg Scholvin, Melissa Goldman, Justin P Kinney,[...]. Nature 2017
543
4

HLA-E-expressing pluripotent stem cells escape allogeneic responses and lysis by NK cells.
Germán G Gornalusse, Roli K Hirata, Sarah E Funk, Laura Riolobos, Vanda S Lopes, Gabriel Manske, Donna Prunkard, Aric G Colunga, Laïla-Aïcha Hanafi, Dennis O Clegg,[...]. Nat Biotechnol 2017
232
4

A bioinformatic assay for pluripotency in human cells.
Franz-Josef Müller, Bernhard M Schuldt, Roy Williams, Dylan Mason, Gulsah Altun, Eirini P Papapetrou, Sandra Danner, Johanna E Goldmann, Arne Herbst, Nils O Schmidt,[...]. Nat Methods 2011
308
4

Immunogenicity of induced pluripotent stem cells.
Tongbiao Zhao, Zhen-Ning Zhang, Zhili Rong, Yang Xu. Nature 2011
951
4

Efficient generation of transgene-free human induced pluripotent stem cells (iPSCs) by temperature-sensitive Sendai virus vectors.
Hiroshi Ban, Naoki Nishishita, Noemi Fusaki, Toshiaki Tabata, Koichi Saeki, Masayuki Shikamura, Nozomi Takada, Makoto Inoue, Mamoru Hasegawa, Shin Kawamata,[...]. Proc Natl Acad Sci U S A 2011
359
4

piggyBac transposition reprograms fibroblasts to induced pluripotent stem cells.
Knut Woltjen, Iacovos P Michael, Paria Mohseni, Ridham Desai, Maria Mileikovsky, Riikka Hämäläinen, Rebecca Cowling, Wei Wang, Pentao Liu, Marina Gertsenstein,[...]. Nature 2009
4

Virus-free induction of pluripotency and subsequent excision of reprogramming factors.
Keisuke Kaji, Katherine Norrby, Agnieszka Paca, Maria Mileikovsky, Paria Mohseni, Knut Woltjen. Nature 2009
854
4

HTSeq--a Python framework to work with high-throughput sequencing data.
Simon Anders, Paul Theodor Pyl, Wolfgang Huber. Bioinformatics 2015
4

Reversal of diabetes with insulin-producing cells derived in vitro from human pluripotent stem cells.
Alireza Rezania, Jennifer E Bruin, Payal Arora, Allison Rubin, Irina Batushansky, Ali Asadi, Shannon O'Dwyer, Nina Quiskamp, Majid Mojibian, Tobias Albrecht,[...]. Nat Biotechnol 2014
826
4

Maturation of human embryonic stem cell-derived pancreatic progenitors into functional islets capable of treating pre-existing diabetes in mice.
Alireza Rezania, Jennifer E Bruin, Michael J Riedel, Majid Mojibian, Ali Asadi, Jean Xu, Rebecca Gauvin, Kavitha Narayan, Francis Karanu, John J O'Neil,[...]. Diabetes 2012
349
4

Advances in Pluripotent Stem Cells: History, Mechanisms, Technologies, and Applications.
Gele Liu, Brian T David, Matthew Trawczynski, Richard G Fessler. Stem Cell Rev Rep 2020
116
4


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.