A citation-based method for searching scientific literature

Nadya Kondrashov, Aya Pusic, Craig R Stumpf, Kunihiko Shimizu, Andrew C Hsieh, Junko Ishijima, Toshihiko Shiroishi, Maria Barna. Cell 2011
Times Cited: 341







List of co-cited articles
1028 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Heterogeneous Ribosomes Preferentially Translate Distinct Subpools of mRNAs Genome-wide.
Zhen Shi, Kotaro Fujii, Kyle M Kovary, Naomi R Genuth, Hannes L Röst, Mary N Teruel, Maria Barna. Mol Cell 2017
248
48

RNA regulons in Hox 5' UTRs confer ribosome specificity to gene regulation.
Shifeng Xue, Siqi Tian, Kotaro Fujii, Wipapat Kladwang, Rhiju Das, Maria Barna. Nature 2015
179
35


Differential Stoichiometry among Core Ribosomal Proteins.
Nikolai Slavov, Stefan Semrau, Edoardo Airoldi, Bogdan Budnik, Alexander van Oudenaarden. Cell Rep 2015
101
26

Ribosomopathies: There's strength in numbers.
Eric W Mills, Rachel Green. Science 2017
167
23

Functional specificity among ribosomal proteins regulates gene expression.
Suzanne Komili, Natalie G Farny, Frederick P Roth, Pamela A Silver. Cell 2007
241
21

The Mammalian Ribo-interactome Reveals Ribosome Functional Diversity and Heterogeneity.
Deniz Simsek, Gerald C Tiu, Ryan A Flynn, Gun W Byeon, Kathrin Leppek, Adele F Xu, Howard Y Chang, Maria Barna. Cell 2017
180
21



The ribosome filter hypothesis.
Vincent P Mauro, Gerald M Edelman. Proc Natl Acad Sci U S A 2002
176
16

Variant ribosomal RNA alleles are conserved and exhibit tissue-specific expression.
Matthew M Parks, Chad M Kurylo, Randall A Dass, Linda Bojmar, David Lyden, C Theresa Vincent, Scott C Blanchard. Sci Adv 2018
83
19

Structures of the human and Drosophila 80S ribosome.
Andreas M Anger, Jean-Paul Armache, Otto Berninghausen, Michael Habeck, Marion Subklewe, Daniel N Wilson, Roland Beckmann. Nature 2013
317
16

Ribosome Levels Selectively Regulate Translation and Lineage Commitment in Human Hematopoiesis.
Rajiv K Khajuria, Mathias Munschauer, Jacob C Ulirsch, Claudia Fiorini, Leif S Ludwig, Sean K McFarland, Nour J Abdulhay, Harrison Specht, Hasmik Keshishian, D R Mani,[...]. Cell 2018
143
15

Rps26 directs mRNA-specific translation by recognition of Kozak sequence elements.
Max B Ferretti, Homa Ghalei, Ethan A Ward, Elizabeth L Potts, Katrin Karbstein. Nat Struct Mol Biol 2017
52
26




How common are extraribosomal functions of ribosomal proteins?
Jonathan R Warner, Kerri B McIntosh. Mol Cell 2009
447
12

The structure of the eukaryotic ribosome at 3.0 Å resolution.
Adam Ben-Shem, Nicolas Garreau de Loubresse, Sergey Melnikov, Lasse Jenner, Gulnara Yusupova, Marat Yusupov. Science 2011
718
12

Does functional specialization of ribosomes really exist?
Max B Ferretti, Katrin Karbstein. RNA 2019
40
30

Structure of the human 80S ribosome.
Heena Khatter, Alexander G Myasnikov, S Kundhavai Natchiar, Bruno P Klaholz. Nature 2015
228
11


Ribosome Stoichiometry: From Form to Function.
Edward Emmott, Marko Jovanovic, Nikolai Slavov. Trends Biochem Sci 2019
35
31

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
10

Phosphorylation of the Ribosomal Protein RPL12/uL11 Affects Translation during Mitosis.
Koshi Imami, Miha Milek, Boris Bogdanow, Tomoharu Yasuda, Nicolai Kastelic, Henrik Zauber, Yasushi Ishihama, Markus Landthaler, Matthias Selbach. Mol Cell 2018
35
28

Profiling of 2'-O-Me in human rRNA reveals a subset of fractionally modified positions and provides evidence for ribosome heterogeneity.
Nicolai Krogh, Martin D Jansson, Sophia J Häfner, Disa Tehler, Ulf Birkedal, Mikkel Christensen-Dalsgaard, Anders H Lund, Henrik Nielsen. Nucleic Acids Res 2016
124
10

Tuning the ribosome: The influence of rRNA modification on eukaryotic ribosome biogenesis and function.
Katherine E Sloan, Ahmed S Warda, Sunny Sharma, Karl-Dieter Entian, Denis L J Lafontaine, Markus T Bohnsack. RNA Biol 2017
227
10

Ribosomal proteins: functions beyond the ribosome.
Xiang Zhou, Wen-Juan Liao, Jun-Ming Liao, Peng Liao, Hua Lu. J Mol Cell Biol 2015
289
10

Visualization of chemical modifications in the human 80S ribosome structure.
S Kundhavai Natchiar, Alexander G Myasnikov, Hanna Kratzat, Isabelle Hazemann, Bruno P Klaholz. Nature 2017
130
10


Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling.
Nicholas T Ingolia, Sina Ghaemmaghami, John R S Newman, Jonathan S Weissman. Science 2009
9

Altered translation of GATA1 in Diamond-Blackfan anemia.
Leif S Ludwig, Hanna T Gazda, Jennifer C Eng, Stephen W Eichhorn, Prathapan Thiru, Roxanne Ghazvinian, Tracy I George, Jason R Gotlib, Alan H Beggs, Colin A Sieff,[...]. Nat Med 2014
165
9

The mechanism of eukaryotic translation initiation and principles of its regulation.
Richard J Jackson, Christopher U T Hellen, Tatyana V Pestova. Nat Rev Mol Cell Biol 2010
9

The economics of ribosome biosynthesis in yeast.
J R Warner. Trends Biochem Sci 1999
9

Endogenous rRNA Sequence Variation Can Regulate Stress Response Gene Expression and Phenotype.
Chad M Kurylo, Matthew M Parks, Manuel F Juette, Boris Zinshteyn, Roger B Altman, Jordana K Thibado, C Theresa Vincent, Scott C Blanchard. Cell Rep 2018
40
22

The ribosomal protein genes and Minute loci of Drosophila melanogaster.
Steven J Marygold, John Roote, Gunter Reuter, Andrew Lambertsson, Michael Ashburner, Gillian H Millburn, Paul M Harrison, Zhan Yu, Naoya Kenmochi, Thomas C Kaufman,[...]. Genome Biol 2007
224
9

The gene encoding ribosomal protein S19 is mutated in Diamond-Blackfan anaemia.
N Draptchinskaia, P Gustavsson, B Andersson, M Pettersson, T N Willig, I Dianzani, S Ball, G Tchernia, J Klar, H Matsson,[...]. Nat Genet 1999
601
9

Fragile X mental retardation protein regulates translation by binding directly to the ribosome.
Eileen Chen, Manjuli R Sharma, Xinying Shi, Rajendra K Agrawal, Simpson Joseph. Mol Cell 2014
126
9

5' UTR m(6)A Promotes Cap-Independent Translation.
Kate D Meyer, Deepak P Patil, Jun Zhou, Alexandra Zinoviev, Maxim A Skabkin, Olivier Elemento, Tatyana V Pestova, Shu-Bing Qian, Samie R Jaffrey. Cell 2015
782
8


On protein synthesis.
F H CRICK. Symp Soc Exp Biol 1958
564
8


Ribosome-omics of the human ribosome.
Varun Gupta, Jonathan R Warner. RNA 2014
35
22

Proteomic analysis of rodent ribosomes revealed heterogeneity including ribosomal proteins L10-like, L22-like 1, and L39-like.
Yoshihiko Sugihara, Hiroki Honda, Tomoharu Iida, Takuma Morinaga, Shingo Hino, Tetsuya Okajima, Tsukasa Matsuda, Daita Nadano. J Proteome Res 2010
41
19

How Ribosomes Translate Cancer.
Sergey O Sulima, Isabel J F Hofman, Kim De Keersmaecker, Jonathan D Dinman. Cancer Discov 2017
77
10

Translational control by 5'-untranslated regions of eukaryotic mRNAs.
Alan G Hinnebusch, Ivaylo P Ivanov, Nahum Sonenberg. Science 2016
440
7

Regulated release of L13a from the 60S ribosomal subunit as a mechanism of transcript-specific translational control.
Barsanjit Mazumder, Prabha Sampath, Vasudevan Seshadri, Ratan K Maitra, Paul E DiCorleto, Paul L Fox. Cell 2003
228
7

Identification of Changing Ribosome Protein Compositions using Mass Spectrometry.
Parimal Samir, Christopher M Browne, Rahul, Ming Sun, Bingxin Shen, Wen Li, Joachim Frank, Andrew J Link. Proteomics 2018
16
43


Ribosomal deficiencies in Diamond-Blackfan anemia impair translation of transcripts essential for differentiation of murine and human erythroblasts.
Rastislav Horos, Hanna Ijspeert, Dagmar Pospisilova, Regine Sendtner, Charlotte Andrieu-Soler, Erdogan Taskesen, Andrzej Nieradka, Radek Cmejla, Michael Sendtner, Ivo P Touw,[...]. Blood 2012
106
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.