Tuomas Lönnberg. Chemistry 2011
Times Cited: 5
Times Cited: 5
Times Cited
Times Co-cited
Similarity
Hydrolysis of 2',3'-O-methyleneadenosin-5'-yl bis-5'-O-methyluridin-3'-yl phosphate: the 2'-hydroxy group stabilizes the phosphorane intermediate, not the departing 3'-oxyanion, by hydrogen bonding.
Tuomas Lönnberg, Jonna Korhonen. J Am Chem Soc 2005
Tuomas Lönnberg, Jonna Korhonen. J Am Chem Soc 2005
60
Cleavage of RNA phosphodiester bonds by small molecular entities: a mechanistic insight.
Harri Lönnberg. Org Biomol Chem 2011
Harri Lönnberg. Org Biomol Chem 2011
60
Kinetics and Mechanisms for the Cleavage and Isomerization of the Phosphodiester Bonds of RNA by Brønsted Acids and Bases.
Mikko Oivanen, Satu Kuusela, Harri Lönnberg. Chem Rev 1998
Mikko Oivanen, Satu Kuusela, Harri Lönnberg. Chem Rev 1998
60
Compelling evidence for a stepwise mechanism of the alkaline cyclisation of uridine 3'-phosphate esters.
Harri Lonnberg, Roger Stromberg, Andrew Williams. Org Biomol Chem 2004
Harri Lonnberg, Roger Stromberg, Andrew Williams. Org Biomol Chem 2004
60
A hydrogen-bonding triad stabilizes the chemical transition state of a group I ribozyme.
S A Strobel, L Ortoleva-Donnelly. Chem Biol 1999
S A Strobel, L Ortoleva-Donnelly. Chem Biol 1999
40
Hydrolytic stability of helical RNA: a selective advantage for the natural 3',5'-bond.
D A Usher, A H McHale. Proc Natl Acad Sci U S A 1976
D A Usher, A H McHale. Proc Natl Acad Sci U S A 1976
40
A rearrangement of the guanosine-binding site establishes an extended network of functional interactions in the Tetrahymena group I ribozyme active site.
Marcello Forconi, Raghuvir N Sengupta, Joseph A Piccirilli, Daniel Herschlag. Biochemistry 2010
Marcello Forconi, Raghuvir N Sengupta, Joseph A Piccirilli, Daniel Herschlag. Biochemistry 2010
40
Autocatalytic cyclization of an excised intervening sequence RNA is a cleavage-ligation reaction.
A J Zaug, P J Grabowski, T R Cech. Nature 1983
A J Zaug, P J Grabowski, T R Cech. Nature 1983
40
Thio effects on the departure of the 3'-linked ribonucleoside from diribonucleoside 3',3'-phosphorodithioate diesters and triribonucleoside 3',3',5'-phosphoromonothioate triesters: implications for ribozyme catalysis.
Tuomas Lönnberg, Mikko Ora, Sami Virtanen, Harri Lönnberg. Chemistry 2007
Tuomas Lönnberg, Mikko Ora, Sami Virtanen, Harri Lönnberg. Chemistry 2007
40
The role of the cleavage site 2'-hydroxyl in the Tetrahymena group I ribozyme reaction.
A Yoshida, S o Shan, D Herschlag, J A Piccirilli. Chem Biol 2000
A Yoshida, S o Shan, D Herschlag, J A Piccirilli. Chem Biol 2000
40
The 2'-hydroxyl group of the guanosine nucleophile donates a functionally important hydrogen bond in the tetrahymena ribozyme reaction.
James L Hougland, Raghuvir N Sengupta, Qing Dai, Shirshendu K Deb, Joseph A Piccirilli. Biochemistry 2008
James L Hougland, Raghuvir N Sengupta, Qing Dai, Shirshendu K Deb, Joseph A Piccirilli. Biochemistry 2008
40
Hydrolysis of 2',3'-O-methyleneadenos-5'-yl bis(2',5'-di-O-methylurid-3'-yl) phosphate, a sugar O-alkylated trinucleoside 3',3',5'-monophosphate: implications for the mechanism of large ribozymes.
Tuomas Lönnberg, Satu Mikkola. J Org Chem 2004
Tuomas Lönnberg, Satu Mikkola. J Org Chem 2004
40
Atomic level architecture of group I introns revealed.
Quentin Vicens, Thomas R Cech. Trends Biochem Sci 2006
Quentin Vicens, Thomas R Cech. Trends Biochem Sci 2006
40
Selection of circularization sites in a group I IVS RNA requires multiple alignments of an internal template-like sequence.
M D Been, T R Cech. Cell 1987
M D Been, T R Cech. Cell 1987
40
Hydrolytic stability of 2',3'-O-methyleneadenos-5'-yl 2',5'-di-O-methylurid-3'-yl 5'-O-methylurid-3'(2')-yl phosphate: implications to feasibility of existence of phosphate-branched RNA under physiological conditions.
Tuomas Lönnberg, Johanna Kiiski, Satu Mikkola. Org Biomol Chem 2005
Tuomas Lönnberg, Johanna Kiiski, Satu Mikkola. Org Biomol Chem 2005
40
Impact of steric constraints on the product distribution of phosphate-branched oligonucleotide models of the large ribozymes.
Tuomas Lönnberg, Kirsi-Maria Kero. Org Biomol Chem 2012
Tuomas Lönnberg, Kirsi-Maria Kero. Org Biomol Chem 2012
66
Hydrolytic stability of a phosphate-branched oligonucleotide incorporating a ribonucleoside 3'-phosphotriester unit.
Tuomas Lönnberg. Nucleosides Nucleotides Nucleic Acids 2006
Tuomas Lönnberg. Nucleosides Nucleotides Nucleic Acids 2006
100
Theoretical evaluation of pK(a) in phosphoranes: implications for phosphate ester hydrolysis.
Xabier Lopez, Michael Schaefer, Annick Dejaegere, Martin Karplus. J Am Chem Soc 2002
Xabier Lopez, Michael Schaefer, Annick Dejaegere, Martin Karplus. J Am Chem Soc 2002
40
Transesterification thio effects of phosphate diesters: free energy barriers and kinetic and equilibrium isotope effects from density-functional theory.
Yun Liu, Brent A Gregersen, Alvan Hengge, Darrin M York. Biochemistry 2006
Yun Liu, Brent A Gregersen, Alvan Hengge, Darrin M York. Biochemistry 2006
40
Enzymatic mechanisms of phosphate and sulfate transfer.
W Wallace Cleland, Alvan C Hengge. Chem Rev 2006
W Wallace Cleland, Alvan C Hengge. Chem Rev 2006
40
Ribozyme speed limits.
Gail Mitchell Emilsson, Shingo Nakamura, Adam Roth, Ronald R Breaker. RNA 2003
Gail Mitchell Emilsson, Shingo Nakamura, Adam Roth, Ronald R Breaker. RNA 2003
40
Estimating pKa values for pentaoxyphosphoranes.
J E Davies, N L Doltsinis, A J Kirby, C D Roussev, M Sprik. J Am Chem Soc 2002
J E Davies, N L Doltsinis, A J Kirby, C D Roussev, M Sprik. J Am Chem Soc 2002
40
Why nature really chose phosphate.
Shina C L Kamerlin, Pankaz K Sharma, Ram B Prasad, Arieh Warshel. Q Rev Biophys 2013
Shina C L Kamerlin, Pankaz K Sharma, Ram B Prasad, Arieh Warshel. Q Rev Biophys 2013
40
Kinetic isotope effects for RNA cleavage by 2'-O- transphosphorylation: nucleophilic activation by specific base.
Michael E Harris, Qing Dai, Hong Gu, Daniel L Kellerman, Joseph A Piccirilli, Vernon E Anderson. J Am Chem Soc 2010
Michael E Harris, Qing Dai, Hong Gu, Daniel L Kellerman, Joseph A Piccirilli, Vernon E Anderson. J Am Chem Soc 2010
40
40
Does water relay play an important role in phosphoryl transfer reactions? Insights from theoretical study of a model reaction in water and tert-butanol.
Yang Yang, Qiang Cui. J Phys Chem B 2009
Yang Yang, Qiang Cui. J Phys Chem B 2009
40
Mechanism of general acid-base catalysis in transesterification of an RNA model phosphodiester studied with strongly basic catalysts.
David O Corona-Martínez, Olga Taran, Anatoly K Yatsimirsky. Org Biomol Chem 2010
David O Corona-Martínez, Olga Taran, Anatoly K Yatsimirsky. Org Biomol Chem 2010
40
Characterization of the reaction path and transition states for RNA transphosphorylation models from theory and experiment.
Kin-Yiu Wong, Hong Gu, Shuming Zhang, Joseph A Piccirilli, Michael E Harris, Darrin M York. Angew Chem Int Ed Engl 2012
Kin-Yiu Wong, Hong Gu, Shuming Zhang, Joseph A Piccirilli, Michael E Harris, Darrin M York. Angew Chem Int Ed Engl 2012
40
The mechanism of RNA strand scission: an experimental measure of the Brønsted coefficient, beta nuc.
Jing-Dong Ye, Nan-Sheng Li, Qing Dai, Joseph A Piccirilli. Angew Chem Int Ed Engl 2007
Jing-Dong Ye, Nan-Sheng Li, Qing Dai, Joseph A Piccirilli. Angew Chem Int Ed Engl 2007
40
Pseudorotation of natural and chemically modified biological phosphoranes: implications for RNA catalysis.
Carlos Silva López, Olalla Nieto Faza, Brent A Gregersen, Xabier Lopez, Angel R de Lera, Darrin M York. Chemphyschem 2004
Carlos Silva López, Olalla Nieto Faza, Brent A Gregersen, Xabier Lopez, Angel R de Lera, Darrin M York. Chemphyschem 2004
40
Intramolecular participation of amino groups in the cleavage and isomerization of ribonucleoside 3'-phosphodiesters: the role in stabilization of the phosphorane intermediate.
Luigi Lain, Harri Lönnberg, Tuomas Lönnberg. Chemistry 2013
Luigi Lain, Harri Lönnberg, Tuomas Lönnberg. Chemistry 2013
40
Adenylate oligomers in single- and double-strand conformation.
J Brahms, A M Michelson, K E Van Holde. J Mol Biol 1966
J Brahms, A M Michelson, K E Van Holde. J Mol Biol 1966
20
Conformation and thermodynamic properties of oligocytidylic acids.
J Brahms, J C Maurizot, A M Michelson. J Mol Biol 1967
J Brahms, J C Maurizot, A M Michelson. J Mol Biol 1967
20
Metal-substrate interactions facilitate the catalytic activity of the bacterial phosphotriesterase.
S B Hong, F M Raushel. Biochemistry 1996
S B Hong, F M Raushel. Biochemistry 1996
20
CD of homopolymer DNA-RNA hybrid duplexes and triplexes containing A-T or A-U base pairs.
H T Steely, D M Gray, R L Ratliff. Nucleic Acids Res 1986
H T Steely, D M Gray, R L Ratliff. Nucleic Acids Res 1986
20
Two competing pathways for self-splicing by group II introns: a quantitative analysis of in vitro reaction rates and products.
D L Daniels, W J Michels, A M Pyle. J Mol Biol 1996
D L Daniels, W J Michels, A M Pyle. J Mol Biol 1996
20
Kinetics and activation parameter analyses of hydrolysis and interconversion of 2',5'- and 3',5'-linked dinucleoside monophosphate at extremely high temperatures.
Kunio Kawamura. Biochim Biophys Acta 2003
Kunio Kawamura. Biochim Biophys Acta 2003
20
Effects of alkylation of phosphodiesters and of bases of infectivity and stability of tobacco mosaic virus RNA.
B Singer, L Sun, H Fraenkel-Conrat. Proc Natl Acad Sci U S A 1975
B Singer, L Sun, H Fraenkel-Conrat. Proc Natl Acad Sci U S A 1975
20
Protein-free spliceosomal snRNAs catalyze a reaction that resembles the first step of splicing.
Saba Valadkhan, Afshin Mohammadi, Chaim Wachtel, James L Manley. RNA 2007
Saba Valadkhan, Afshin Mohammadi, Chaim Wachtel, James L Manley. RNA 2007
20
Large-scale proteomic analysis of the human spliceosome.
Juri Rappsilber, Ursula Ryder, Angus I Lamond, Matthias Mann. Genome Res 2002
Juri Rappsilber, Ursula Ryder, Angus I Lamond, Matthias Mann. Genome Res 2002
20
Self-splicing of group II introns in vitro: mapping of the branch point and mutational inhibition of lariat formation.
C Schmelzer, R J Schweyen. Cell 1986
C Schmelzer, R J Schweyen. Cell 1986
20
Metal ion catalysis during the exon-ligation step of nuclear pre-mRNA splicing: extending the parallels between the spliceosome and group II introns.
P M Gordon, E J Sontheimer, J A Piccirilli. RNA 2000
P M Gordon, E J Sontheimer, J A Piccirilli. RNA 2000
20
Structural basis for exon recognition by a group II intron.
Navtej Toor, Kanagalaghatta Rajashankar, Kevin S Keating, Anna Marie Pyle. Nat Struct Mol Biol 2008
Navtej Toor, Kanagalaghatta Rajashankar, Kevin S Keating, Anna Marie Pyle. Nat Struct Mol Biol 2008
20
RNA conformational classes.
Bohdan Schneider, Zdenek Morávek, Helen M Berman. Nucleic Acids Res 2004
Bohdan Schneider, Zdenek Morávek, Helen M Berman. Nucleic Acids Res 2004
20
Characterization of the catalytic activity of U2 and U6 snRNAs.
Saba Valadkhan, James L Manley. RNA 2003
Saba Valadkhan, James L Manley. RNA 2003
20
Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.