A citation-based method for searching scientific literature

G Konopka, E Wexler, E Rosen, Z Mukamel, G E Osborn, L Chen, D Lu, F Gao, K Gao, J K Lowe, D H Geschwind. Mol Psychiatry 2012
Times Cited: 61







List of co-cited articles
638 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Transcriptomic analysis of autistic brain reveals convergent molecular pathology.
Irina Voineagu, Xinchen Wang, Patrick Johnston, Jennifer K Lowe, Yuan Tian, Steve Horvath, Jonathan Mill, Rita M Cantor, Benjamin J Blencowe, Daniel H Geschwind. Nature 2011
29

Spatio-temporal transcriptome of the human brain.
Hyo Jung Kang, Yuka Imamura Kawasawa, Feng Cheng, Ying Zhu, Xuming Xu, Mingfeng Li, André M M Sousa, Mihovil Pletikos, Kyle A Meyer, Goran Sedmak,[...]. Nature 2011
27

WGCNA: an R package for weighted correlation network analysis.
Peter Langfelder, Steve Horvath. BMC Bioinformatics 2008
21

A quantitative framework to evaluate modeling of cortical development by neural stem cells.
Jason L Stein, Luis de la Torre-Ubieta, Yuan Tian, Neelroop N Parikshak, Israel A Hernández, Maria C Marchetto, Dylan K Baker, Daning Lu, Cassidy R Hinman, Jennifer K Lowe,[...]. Neuron 2014
130
21

A model for neural development and treatment of Rett syndrome using human induced pluripotent stem cells.
Maria C N Marchetto, Cassiano Carromeu, Allan Acab, Diana Yu, Gene W Yeo, Yangling Mu, Gong Chen, Fred H Gage, Alysson R Muotri. Cell 2010
922
19

De novo mutations revealed by whole-exome sequencing are strongly associated with autism.
Stephan J Sanders, Michael T Murtha, Abha R Gupta, John D Murdoch, Melanie J Raubeson, A Jeremy Willsey, A Gulhan Ercan-Sencicek, Nicholas M DiLullo, Neelroop N Parikshak, Jason L Stein,[...]. Nature 2012
19

Human-specific transcriptional regulation of CNS development genes by FOXP2.
Genevieve Konopka, Jamee M Bomar, Kellen Winden, Giovanni Coppola, Zophonias O Jonsson, Fuying Gao, Sophia Peng, Todd M Preuss, James A Wohlschlegel, Daniel H Geschwind. Nature 2009
225
18

Exome sequencing in sporadic autism spectrum disorders identifies severe de novo mutations.
Brian J O'Roak, Pelagia Deriziotis, Choli Lee, Laura Vives, Jerrod J Schwartz, Santhosh Girirajan, Emre Karakoc, Alexandra P Mackenzie, Sarah B Ng, Carl Baker,[...]. Nat Genet 2011
805
18

Integrative functional genomic analyses implicate specific molecular pathways and circuits in autism.
Neelroop N Parikshak, Rui Luo, Alice Zhang, Hyejung Won, Jennifer K Lowe, Vijayendran Chandran, Steve Horvath, Daniel H Geschwind. Cell 2013
632
18

Using iPSC-derived neurons to uncover cellular phenotypes associated with Timothy syndrome.
Sergiu P Paşca, Thomas Portmann, Irina Voineagu, Masayuki Yazawa, Aleksandr Shcheglovitov, Anca M Paşca, Branden Cord, Theo D Palmer, Sachiko Chikahisa, Seiji Nishino,[...]. Nat Med 2011
414
16

A forkhead-domain gene is mutated in a severe speech and language disorder.
C S Lai, S E Fisher, J A Hurst, F Vargha-Khadem, A P Monaco. Nature 2001
14

A functional genetic link between distinct developmental language disorders.
Sonja C Vernes, Dianne F Newbury, Brett S Abrahams, Laura Winchester, Jérôme Nicod, Matthias Groszer, Maricela Alarcón, Peter L Oliver, Kay E Davies, Daniel H Geschwind,[...]. N Engl J Med 2008
406
14

Multiple recurrent de novo CNVs, including duplications of the 7q11.23 Williams syndrome region, are strongly associated with autism.
Stephan J Sanders, A Gulhan Ercan-Sencicek, Vanessa Hus, Rui Luo, Michael T Murtha, Daniel Moreno-De-Luca, Su H Chu, Michael P Moreau, Abha R Gupta, Susanne A Thomson,[...]. Neuron 2011
859
14

Functional impact of global rare copy number variation in autism spectrum disorders.
Dalila Pinto, Alistair T Pagnamenta, Lambertus Klei, Richard Anney, Daniele Merico, Regina Regan, Judith Conroy, Tiago R Magalhaes, Catarina Correia, Brett S Abrahams,[...]. Nature 2010
14

AutDB: a gene reference resource for autism research.
Saumyendra N Basu, Ravi Kollu, Sharmila Banerjee-Basu. Nucleic Acids Res 2009
263
14

Functional organization of the transcriptome in human brain.
Michael C Oldham, Genevieve Konopka, Kazuya Iwamoto, Peter Langfelder, Tadafumi Kato, Steve Horvath, Daniel H Geschwind. Nat Neurosci 2008
536
14

Coexpression networks implicate human midfetal deep cortical projection neurons in the pathogenesis of autism.
A Jeremy Willsey, Stephan J Sanders, Mingfeng Li, Shan Dong, Andrew T Tebbenkamp, Rebecca A Muhle, Steven K Reilly, Leon Lin, Sofia Fertuzinhos, Jeremy A Miller,[...]. Cell 2013
558
14

Transcriptional landscape of the prenatal human brain.
Jeremy A Miller, Song-Lin Ding, Susan M Sunkin, Kimberly A Smith, Lydia Ng, Aaron Szafer, Amanda Ebbert, Zackery L Riley, Joshua J Royall, Kaylynn Aiona,[...]. Nature 2014
730
14

Autism genome-wide copy number variation reveals ubiquitin and neuronal genes.
Joseph T Glessner, Kai Wang, Guiqing Cai, Olena Korvatska, Cecilia E Kim, Shawn Wood, Haitao Zhang, Annette Estes, Camille W Brune, Jonathan P Bradfield,[...]. Nature 2009
971
13

Functional and evolutionary insights into human brain development through global transcriptome analysis.
Matthew B Johnson, Yuka Imamura Kawasawa, Christopher E Mason, Zeljka Krsnik, Giovanni Coppola, Darko Bogdanović, Daniel H Geschwind, Shrikant M Mane, Matthew W State, Nenad Sestan. Neuron 2009
417
13

Molecular evolution of FOXP2, a gene involved in speech and language.
Wolfgang Enard, Molly Przeworski, Simon E Fisher, Cecilia S L Lai, Victor Wiebe, Takashi Kitano, Anthony P Monaco, Svante Pääbo. Nature 2002
659
13

Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations.
Brian J O'Roak, Laura Vives, Santhosh Girirajan, Emre Karakoc, Niklas Krumm, Bradley P Coe, Roie Levy, Arthur Ko, Choli Lee, Joshua D Smith,[...]. Nature 2012
13

The contribution of de novo coding mutations to autism spectrum disorder.
Ivan Iossifov, Brian J O'Roak, Stephan J Sanders, Michael Ronemus, Niklas Krumm, Dan Levy, Holly A Stessman, Kali T Witherspoon, Laura Vives, Karynne E Patterson,[...]. Nature 2014
13

Absence of CNTNAP2 leads to epilepsy, neuronal migration abnormalities, and core autism-related deficits.
Olga Peñagarikano, Brett S Abrahams, Edward I Herman, Kellen D Winden, Amos Gdalyahu, Hongmei Dong, Lisa I Sonnenblick, Robin Gruver, Joel Almajano, Anatol Bragin,[...]. Cell 2011
643
11

Strong association of de novo copy number mutations with autism.
Jonathan Sebat, B Lakshmi, Dheeraj Malhotra, Jennifer Troge, Christa Lese-Martin, Tom Walsh, Boris Yamrom, Seungtai Yoon, Alex Krasnitz, Jude Kendall,[...]. Science 2007
11

A general framework for weighted gene co-expression network analysis.
Bin Zhang, Steve Horvath. Stat Appl Genet Mol Biol 2005
11

Modelling schizophrenia using human induced pluripotent stem cells.
Kristen J Brennand, Anthony Simone, Jessica Jou, Chelsea Gelboin-Burkhart, Ngoc Tran, Sarah Sangar, Yan Li, Yangling Mu, Gong Chen, Diana Yu,[...]. Nature 2011
935
11

Induction of pluripotent stem cells from adult human fibroblasts by defined factors.
Kazutoshi Takahashi, Koji Tanabe, Mari Ohnuki, Megumi Narita, Tomoko Ichisaka, Kiichiro Tomoda, Shinya Yamanaka. Cell 2007
11


A humanized version of Foxp2 affects cortico-basal ganglia circuits in mice.
Wolfgang Enard, Sabine Gehre, Kurt Hammerschmidt, Sabine M Hölter, Torsten Blass, Mehmet Somel, Martina K Brückner, Christiane Schreiweis, Christine Winter, Reinhard Sohr,[...]. Cell 2009
296
11

Foxp2 regulates gene networks implicated in neurite outgrowth in the developing brain.
Sonja C Vernes, Peter L Oliver, Elizabeth Spiteri, Helen E Lockstone, Rathi Puliyadi, Jennifer M Taylor, Joses Ho, Cedric Mombereau, Ariel Brewer, Ernesto Lowy,[...]. PLoS Genet 2011
181
11

De novo mutations in FOXP1 in cases with intellectual disability, autism, and language impairment.
Fadi F Hamdan, Hussein Daoud, Daniel Rochefort, Amélie Piton, Julie Gauthier, Mathieu Langlois, Gila Foomani, Sylvia Dobrzeniecka, Marie-Odile Krebs, Ridha Joober,[...]. Am J Hum Genet 2010
152
11


Genetics of autism spectrum disorders.
Daniel H Geschwind. Trends Cogn Sci 2011
349
11

Patterns and rates of exonic de novo mutations in autism spectrum disorders.
Benjamin M Neale, Yan Kou, Li Liu, Avi Ma'ayan, Kaitlin E Samocha, Aniko Sabo, Chiao-Feng Lin, Christine Stevens, Li-San Wang, Vladimir Makarov,[...]. Nature 2012
11

Structural variation of chromosomes in autism spectrum disorder.
Christian R Marshall, Abdul Noor, John B Vincent, Anath C Lionel, Lars Feuk, Jennifer Skaug, Mary Shago, Rainald Moessner, Dalila Pinto, Yan Ren,[...]. Am J Hum Genet 2008
9

Recessive symptomatic focal epilepsy and mutant contactin-associated protein-like 2.
Kevin A Strauss, Erik G Puffenberger, Matthew J Huentelman, Steven Gottlieb, Seth E Dobrin, Jennifer M Parod, Dietrich A Stephan, D Holmes Morton. N Engl J Med 2006
441
9

Association between microdeletion and microduplication at 16p11.2 and autism.
Lauren A Weiss, Yiping Shen, Joshua M Korn, Dan E Arking, David T Miller, Ragnheidur Fossdal, Evald Saemundsen, Hreinn Stefansson, Manuel A R Ferreira, Todd Green,[...]. N Engl J Med 2008
9

Regulation of MET by FOXP2, genes implicated in higher cognitive dysfunction and autism risk.
Zohar Mukamel, Genevieve Konopka, Eric Wexler, Gregory E Osborn, Hongmei Dong, Mica Y Bergman, Pat Levitt, Daniel H Geschwind. J Neurosci 2011
71
9

Functional genomic analyses identify pathways dysregulated by progranulin deficiency, implicating Wnt signaling.
Ezra Y Rosen, Eric M Wexler, Revital Versano, Giovanni Coppola, Fuying Gao, Kellen D Winden, Michael C Oldham, Lauren Herl Martens, Ping Zhou, Robert V Farese,[...]. Neuron 2011
98
9

Common genetic variants on 5p14.1 associate with autism spectrum disorders.
Kai Wang, Haitao Zhang, Deqiong Ma, Maja Bucan, Joseph T Glessner, Brett S Abrahams, Daria Salyakina, Marcin Imielinski, Jonathan P Bradfield, Patrick M A Sleiman,[...]. Nature 2009
689
9

Altered ultrasonic vocalization in mice with a disruption in the Foxp2 gene.
Weiguo Shu, Julie Y Cho, Yuhui Jiang, Minhua Zhang, Donald Weisz, Gregory A Elder, James Schmeidler, Rita De Gasperi, Miguel A Gama Sosa, Donald Rabidou,[...]. Proc Natl Acad Sci U S A 2005
263
9

Is my network module preserved and reproducible?
Peter Langfelder, Rui Luo, Michael C Oldham, Steve Horvath. PLoS Comput Biol 2011
535
9

Identification of the transcriptional targets of FOXP2, a gene linked to speech and language, in developing human brain.
Elizabeth Spiteri, Genevieve Konopka, Giovanni Coppola, Jamee Bomar, Michael Oldham, Jing Ou, Sonja C Vernes, Simon E Fisher, Bing Ren, Daniel H Geschwind. Am J Hum Genet 2007
180
9

Extension of cortical synaptic development distinguishes humans from chimpanzees and macaques.
Xiling Liu, Mehmet Somel, Lin Tang, Zheng Yan, Xi Jiang, Song Guo, Yuan Yuan, Liu He, Anna Oleksiak, Yan Zhang,[...]. Genome Res 2012
134
9

De novo gene disruptions in children on the autistic spectrum.
Ivan Iossifov, Michael Ronemus, Dan Levy, Zihua Wang, Inessa Hakker, Julie Rosenbaum, Boris Yamrom, Yoon-Ha Lee, Giuseppe Narzisi, Anthony Leotta,[...]. Neuron 2012
980
9

Human-specific transcriptional networks in the brain.
Genevieve Konopka, Tara Friedrich, Jeremy Davis-Turak, Kellen Winden, Michael C Oldham, Fuying Gao, Leslie Chen, Guang-Zhong Wang, Rui Luo, Todd M Preuss,[...]. Neuron 2012
159
9

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
9

Advances in autism genetics: on the threshold of a new neurobiology.
Brett S Abrahams, Daniel H Geschwind. Nat Rev Genet 2008
8

Parallel FoxP1 and FoxP2 expression in songbird and human brain predicts functional interaction.
Ikuko Teramitsu, Lili C Kudo, Sarah E London, Daniel H Geschwind, Stephanie A White. J Neurosci 2004
229
8


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.