A citation-based method for searching scientific literature

Bingling Li, Andrew D Ellington, Xi Chen. Nucleic Acids Res 2011
Times Cited: 285







List of co-cited articles
1040 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Programming biomolecular self-assembly pathways.
Peng Yin, Harry M T Choi, Colby R Calvert, Niles A Pierce. Nature 2008
767
55

Triggered amplification by hybridization chain reaction.
Robert M Dirks, Niles A Pierce. Proc Natl Acad Sci U S A 2004
886
43

Engineering entropy-driven reactions and networks catalyzed by DNA.
David Yu Zhang, Andrew J Turberfield, Bernard Yurke, Erik Winfree. Science 2007
530
32

Dynamic DNA nanotechnology using strand-displacement reactions.
David Yu Zhang, Georg Seelig. Nat Chem 2011
802
30

Diagnostic applications of nucleic acid circuits.
Cheulhee Jung, Andrew D Ellington. Acc Chem Res 2014
167
28

Control of DNA strand displacement kinetics using toehold exchange.
David Yu Zhang, Erik Winfree. J Am Chem Soc 2009
622
22

Stacking nonenzymatic circuits for high signal gain.
Xi Chen, Neima Briggs, Jeremy R McLain, Andrew D Ellington. Proc Natl Acad Sci U S A 2013
143
20

Enzyme-free nucleic acid logic circuits.
Georg Seelig, David Soloveichik, David Yu Zhang, Erik Winfree. Science 2006
696
19

Real-time detection of isothermal amplification reactions with thermostable catalytic hairpin assembly.
Yu Sherry Jiang, Bingling Li, John N Milligan, Sanchita Bhadra, Andrew D Ellington. J Am Chem Soc 2013
155
19

A DNA-fuelled molecular machine made of DNA.
B Yurke, A J Turberfield, A P Mills, F C Simmel, J L Neumann. Nature 2000
18


Construction of an enzyme-free concatenated DNA circuit for signal amplification and intracellular imaging.
Huimin Wang, Chunxiao Li, Xiaoqing Liu, Xiang Zhou, Fuan Wang. Chem Sci 2018
77
20

Isothermal Amplification of Nucleic Acids.
Yongxi Zhao, Feng Chen, Qian Li, Lihua Wang, Chunhai Fan. Chem Rev 2015
584
15

NUPACK: Analysis and design of nucleic acid systems.
Joseph N Zadeh, Conrad D Steenberg, Justin S Bois, Brian R Wolfe, Marshall B Pierce, Asif R Khan, Robert M Dirks, Niles A Pierce. J Comput Chem 2011
658
15

Programmable in situ amplification for multiplexed imaging of mRNA expression.
Harry M T Choi, Joann Y Chang, Le A Trinh, Jennifer E Padilla, Scott E Fraser, Niles A Pierce. Nat Biotechnol 2010
346
14

Probing spatial organization of DNA strands using enzyme-free hairpin assembly circuits.
Bingling Li, Yu Jiang, Xi Chen, Andrew D Ellington. J Am Chem Soc 2012
144
14

A stochastic DNA walker that traverses a microparticle surface.
C Jung, P B Allen, A D Ellington. Nat Nanotechnol 2016
166
14

Functional nucleic acid sensors.
Juewen Liu, Zehui Cao, Yi Lu. Chem Rev 2009
13

A Nonenzymatic Hairpin DNA Cascade Reaction Provides High Signal Gain of mRNA Imaging inside Live Cells.
Cuichen Wu, Sena Cansiz, Liqin Zhang, I-Ting Teng, Liping Qiu, Juan Li, Yuan Liu, Cuisong Zhou, Rong Hu, Tao Zhang,[...]. J Am Chem Soc 2015
174
13


Mismatches improve the performance of strand-displacement nucleic Acid circuits.
Yu Sherry Jiang, Sanchita Bhadra, Bingling Li, Andrew D Ellington. Angew Chem Int Ed Engl 2014
81
14

Neural network computation with DNA strand displacement cascades.
Lulu Qian, Erik Winfree, Jehoshua Bruck. Nature 2011
389
12

Rational Engineering of a Dynamic, Entropy-Driven DNA Nanomachine for Intracellular MicroRNA Imaging.
Cheng-Pin Liang, Pei-Qiang Ma, Hui Liu, Xinggang Guo, Bin-Cheng Yin, Bang-Ce Ye. Angew Chem Int Ed Engl 2017
141
12

Genetically Encoded Catalytic Hairpin Assembly for Sensitive RNA Imaging in Live Cells.
Aruni P K K Karunanayake Mudiyanselage, Qikun Yu, Mark A Leon-Duque, Bin Zhao, Rigumula Wu, Mingxu You. J Am Chem Soc 2018
86
12


DNA as a universal substrate for chemical kinetics.
David Soloveichik, Georg Seelig, Erik Winfree. Proc Natl Acad Sci U S A 2010
215
10

MicroRNA: function, detection, and bioanalysis.
Haifeng Dong, Jianping Lei, Lin Ding, Yongqiang Wen, Huangxian Ju, Xueji Zhang. Chem Rev 2013
596
10

Applications of Catalytic Hairpin Assembly Reaction in Biosensing.
Jumei Liu, Ye Zhang, Huabin Xie, Li Zhao, Lei Zheng, Huiming Ye. Small 2019
48
20

Amplified analysis of DNA by the autonomous assembly of polymers consisting of DNAzyme wires.
Fuan Wang, Johann Elbaz, Ron Orbach, Nimrod Magen, Itamar Willner. J Am Chem Soc 2011
228
9

A logic-gated nanorobot for targeted transport of molecular payloads.
Shawn M Douglas, Ido Bachelet, George M Church. Science 2012
9


Pyrene-excimer probes based on the hybridization chain reaction for the detection of nucleic acids in complex biological fluids.
Jin Huang, Yanrong Wu, Yan Chen, Zhi Zhu, Xiaohai Yang, Chaoyong James Yang, Kemin Wang, Weihong Tan. Angew Chem Int Ed Engl 2011
328
9

MicroRNAs: small RNAs with a big role in gene regulation.
Lin He, Gregory J Hannon. Nat Rev Genet 2004
9

DNA nanotechnology from the test tube to the cell.
Yuan-Jyue Chen, Benjamin Groves, Richard A Muscat, Georg Seelig. Nat Nanotechnol 2015
277
9


Computing in mammalian cells with nucleic acid strand exchange.
Benjamin Groves, Yuan-Jyue Chen, Chiara Zurla, Sergii Pochekailov, Jonathan L Kirschman, Philip J Santangelo, Georg Seelig. Nat Nanotechnol 2016
108
8



Structure-switching signaling aptamers.
Razvan Nutiu, Yingfu Li. J Am Chem Soc 2003
578
8

Molecular robots guided by prescriptive landscapes.
Kyle Lund, Anthony J Manzo, Nadine Dabby, Nicole Michelotti, Alexander Johnson-Buck, Jeanette Nangreave, Steven Taylor, Renjun Pei, Milan N Stojanovic, Nils G Walter,[...]. Nature 2010
467
8

Metal Sensing by DNA.
Wenhu Zhou, Runjhun Saran, Juewen Liu. Chem Rev 2017
325
8


Remote toehold: a mechanism for flexible control of DNA hybridization kinetics.
Anthony J Genot, David Yu Zhang, Jonathan Bath, Andrew J Turberfield. J Am Chem Soc 2011
144
8

Imaging Endogenous Metal Ions in Living Cells Using a DNAzyme-Catalytic Hairpin Assembly Probe.
Zhenkun Wu, Huanhuan Fan, Nitya Sai Reddy Satyavolu, WenJing Wang, Ryan Lake, Jian-Hui Jiang, Yi Lu. Angew Chem Int Ed Engl 2017
90
8

On the biophysics and kinetics of toehold-mediated DNA strand displacement.
Niranjan Srinivas, Thomas E Ouldridge, Petr Sulc, Joseph M Schaeffer, Bernard Yurke, Ard A Louis, Jonathan P K Doye, Erik Winfree. Nucleic Acids Res 2013
210
8


DNAzyme-Mediated Assays for Amplified Detection of Nucleic Acids and Proteins.
Hanyong Peng, Ashley M Newbigging, Zhixin Wang, Jeffrey Tao, Wenchan Deng, X Chris Le, Hongquan Zhang. Anal Chem 2018
83
9

A DNA nanowire based localized catalytic hairpin assembly reaction for microRNA imaging in live cells.
Qiaomei Wei, Jin Huang, Jing Li, Jiaoli Wang, Xiaohai Yang, Jianbo Liu, Kemin Wang. Chem Sci 2018
58
13

Enzyme-free colorimetric detection of DNA by using gold nanoparticles and hybridization chain reaction amplification.
Pei Liu, Xiaohai Yang, Shan Sun, Qing Wang, Kemin Wang, Jin Huang, Jianbo Liu, Leiliang He. Anal Chem 2013
190
8

Principles and Applications of Nucleic Acid Strand Displacement Reactions.
Friedrich C Simmel, Bernard Yurke, Hari R Singh. Chem Rev 2019
121
8


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.