A citation-based method for searching scientific literature

Eric M Blalock, Heather M Buechel, Jelena Popovic, James W Geddes, Philip W Landfield. J Chem Neuroanat 2011
Times Cited: 116







List of co-cited articles
946 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Incipient Alzheimer's disease: microarray correlation analyses reveal major transcriptional and tumor suppressor responses.
Eric M Blalock, James W Geddes, Kuey Chu Chen, Nada M Porter, William R Markesbery, Philip W Landfield. Proc Natl Acad Sci U S A 2004
691
44

Altered expression of diabetes-related genes in Alzheimer's disease brains: the Hisayama study.
Masaaki Hokama, Sugako Oka, Julio Leon, Toshiharu Ninomiya, Hiroyuki Honda, Kensuke Sasaki, Toru Iwaki, Tomoyuki Ohara, Tomio Sasaki, Frank M LaFerla,[...]. Cereb Cortex 2014
174
31

Genes and pathways underlying regional and cell type changes in Alzheimer's disease.
Jeremy A Miller, Randall L Woltjer, Jeff M Goodenbour, Steve Horvath, Daniel H Geschwind. Genome Med 2013
142
24

Gene expression profiles in anatomically and functionally distinct regions of the normal aged human brain.
Winnie S Liang, Travis Dunckley, Thomas G Beach, Andrew Grover, Diego Mastroeni, Douglas G Walker, Richard J Caselli, Walter A Kukull, Daniel McKeel, John C Morris,[...]. Physiol Genomics 2007
164
24

Synaptic genes are extensively downregulated across multiple brain regions in normal human aging and Alzheimer's disease.
Nicole C Berchtold, Paul D Coleman, David H Cribbs, Joseph Rogers, Daniel L Gillen, Carl W Cotman. Neurobiol Aging 2013
136
23

Gene expression changes in the course of normal brain aging are sexually dimorphic.
Nicole C Berchtold, David H Cribbs, Paul D Coleman, Joseph Rogers, Elizabeth Head, Ronald Kim, Tom Beach, Carol Miller, Juan Troncoso, John Q Trojanowski,[...]. Proc Natl Acad Sci U S A 2008
325
23

Alzheimer's disease is associated with reduced expression of energy metabolism genes in posterior cingulate neurons.
Winnie S Liang, Eric M Reiman, Jon Valla, Travis Dunckley, Thomas G Beach, Andrew Grover, Tracey L Niedzielko, Lonnie E Schneider, Diego Mastroeni, Richard Caselli,[...]. Proc Natl Acad Sci U S A 2008
361
20

Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.
J C Lambert, C A Ibrahim-Verbaas, D Harold, A C Naj, R Sims, C Bellenguez, A L DeStafano, J C Bis, G W Beecham, B Grenier-Boley,[...]. Nat Genet 2013
20

Integrated systems approach identifies genetic nodes and networks in late-onset Alzheimer's disease.
Bin Zhang, Chris Gaiteri, Liviu-Gabriel Bodea, Zhi Wang, Joshua McElwee, Alexei A Podtelezhnikov, Chunsheng Zhang, Tao Xie, Linh Tran, Radu Dobrin,[...]. Cell 2013
899
20

Cytoscape: a software environment for integrated models of biomolecular interaction networks.
Paul Shannon, Andrew Markiel, Owen Ozier, Nitin S Baliga, Jonathan T Wang, Daniel Ramage, Nada Amin, Benno Schwikowski, Trey Ideker. Genome Res 2003
15

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources.
Da Wei Huang, Brad T Sherman, Richard A Lempicki. Nat Protoc 2009
14

NCBI GEO: archive for functional genomics data sets--update.
Tanya Barrett, Stephen E Wilhite, Pierre Ledoux, Carlos Evangelista, Irene F Kim, Maxim Tomashevsky, Kimberly A Marshall, Katherine H Phillippy, Patti M Sherman, Michelle Holko,[...]. Nucleic Acids Res 2013
14

Integrative network analysis of nineteen brain regions identifies molecular signatures and networks underlying selective regional vulnerability to Alzheimer's disease.
Minghui Wang, Panos Roussos, Andrew McKenzie, Xianxiao Zhou, Yuji Kajiwara, Kristen J Brennand, Gabriele C De Luca, John F Crary, Patrizia Casaccia, Joseph D Buxbaum,[...]. Genome Med 2016
118
13

REST and stress resistance in ageing and Alzheimer's disease.
Tao Lu, Liviu Aron, Joseph Zullo, Ying Pan, Haeyoung Kim, Yiwen Chen, Tun-Hsiang Yang, Hyun-Min Kim, Derek Drake, X Shirley Liu,[...]. Nature 2014
396
12

Gene expression correlates of neurofibrillary tangles in Alzheimer's disease.
Travis Dunckley, Thomas G Beach, Keri E Ramsey, Andrew Grover, Diego Mastroeni, Douglas G Walker, Bonnie J LaFleur, Keith D Coon, Kevin M Brown, Richard Caselli,[...]. Neurobiol Aging 2006
100
11

limma powers differential expression analyses for RNA-sequencing and microarray studies.
Matthew E Ritchie, Belinda Phipson, Di Wu, Yifang Hu, Charity W Law, Wei Shi, Gordon K Smyth. Nucleic Acids Res 2015
11

Joint genome-wide profiling of miRNA and mRNA expression in Alzheimer's disease cortex reveals altered miRNA regulation.
Juan Nunez-Iglesias, Chun-Chi Liu, Todd E Morgan, Caleb E Finch, Xianghong Jasmine Zhou. PLoS One 2010
242
10

Genome wide profiling of altered gene expression in the neocortex of Alzheimer's disease.
Michelle G Tan, Wei-Ting Chua, Margaret M Esiri, A David Smith, Harry V Vinters, Mitchell K Lai. J Neurosci Res 2010
82
12

Transcriptome analysis of synaptoneurosomes identifies neuroplasticity genes overexpressed in incipient Alzheimer's disease.
Celia Williams, Ruty Mehrian Shai, Yongchun Wu, Ya-Hsuan Hsu, Traci Sitzer, Bryan Spann, Carol McCleary, Yi Mo, Carol A Miller. PLoS One 2009
82
10

Altered neuronal gene expression in brain regions differentially affected by Alzheimer's disease: a reference data set.
Winnie S Liang, Travis Dunckley, Thomas G Beach, Andrew Grover, Diego Mastroeni, Keri Ramsey, Richard J Caselli, Walter A Kukull, Daniel McKeel, John C Morris,[...]. Physiol Genomics 2008
190
9

Gene Expression Omnibus: NCBI gene expression and hybridization array data repository.
Ron Edgar, Michael Domrachev, Alex E Lash. Nucleic Acids Res 2002
9

Gene regulation and DNA damage in the ageing human brain.
Tao Lu, Ying Pan, Shyan-Yuan Kao, Cheng Li, Isaac Kohane, Jennifer Chan, Bruce A Yankner. Nature 2004
9

WGCNA: an R package for weighted correlation network analysis.
Peter Langfelder, Steve Horvath. BMC Bioinformatics 2008
9

Common dysregulation network in the human prefrontal cortex underlies two neurodegenerative diseases.
Manikandan Narayanan, Jimmy L Huynh, Kai Wang, Xia Yang, Seungyeul Yoo, Joshua McElwee, Bin Zhang, Chunsheng Zhang, John R Lamb, Tao Xie,[...]. Mol Syst Biol 2014
81
11

Multiscale Analysis of Independent Alzheimer's Cohorts Finds Disruption of Molecular, Genetic, and Clinical Networks by Human Herpesvirus.
Ben Readhead, Jean-Vianney Haure-Mirande, Cory C Funk, Matthew A Richards, Paul Shannon, Vahram Haroutunian, Mary Sano, Winnie S Liang, Noam D Beckmann, Nathan D Price,[...]. Neuron 2018
290
9

Genome-wide association study identifies variants at CLU and PICALM associated with Alzheimer's disease.
Denise Harold, Richard Abraham, Paul Hollingworth, Rebecca Sims, Amy Gerrish, Marian L Hamshere, Jaspreet Singh Pahwa, Valentina Moskvina, Kimberley Dowzell, Amy Williams,[...]. Nat Genet 2009
8

A preliminary study of the whole-genome expression profile of sporadic and monogenic early-onset Alzheimer's disease.
Anna Antonell, Albert Lladó, Jordi Altirriba, Teresa Botta-Orfila, Mircea Balasa, Manel Fernández, Isidre Ferrer, Raquel Sánchez-Valle, José Luis Molinuevo. Neurobiol Aging 2013
52
15

Genetic control of human brain transcript expression in Alzheimer disease.
Jennifer A Webster, J Raphael Gibbs, Jennifer Clarke, Monika Ray, Weixiong Zhang, Peter Holmans, Kristen Rohrer, Alice Zhao, Lauren Marlowe, Mona Kaleem,[...]. Am J Hum Genet 2009
209
8

Alteration of the microRNA network during the progression of Alzheimer's disease.
Pierre Lau, Koen Bossers, Rekin's Janky, Evgenia Salta, Carlo Sala Frigerio, Shahar Barbash, Roy Rothman, Annerieke S R Sierksma, Amantha Thathiah, David Greenberg,[...]. EMBO Mol Med 2013
292
8

Extensive innate immune gene activation accompanies brain aging, increasing vulnerability to cognitive decline and neurodegeneration: a microarray study.
David H Cribbs, Nicole C Berchtold, Victoria Perreau, Paul D Coleman, Joseph Rogers, Andrea J Tenner, Carl W Cotman. J Neuroinflammation 2012
273
8


affy--analysis of Affymetrix GeneChip data at the probe level.
Laurent Gautier, Leslie Cope, Benjamin M Bolstad, Rafael A Irizarry. Bioinformatics 2004
8

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.
Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander,[...]. Proc Natl Acad Sci U S A 2005
7

Cholinergic-associated loss of hnRNP-A/B in Alzheimer's disease impairs cortical splicing and cognitive function in mice.
Amit Berson, Shahar Barbash, Galit Shaltiel, Yael Goll, Geula Hanin, David S Greenberg, Maya Ketzef, Albert J Becker, Alon Friedman, Hermona Soreq. EMBO Mol Med 2012
101
7


Integration of GWAS SNPs and tissue specific expression profiling reveal discrete eQTLs for human traits in blood and brain.
Dena G Hernandez, Mike A Nalls, Matthew Moore, Sean Chong, Allissa Dillman, Daniah Trabzuni, J Raphael Gibbs, Mina Ryten, Sampath Arepalli, Michael E Weale,[...]. Neurobiol Dis 2012
89
7

Systematic meta-analyses of Alzheimer disease genetic association studies: the AlzGene database.
Lars Bertram, Matthew B McQueen, Kristina Mullin, Deborah Blacker, Rudolph E Tanzi. Nat Genet 2007
7

KEGG: kyoto encyclopedia of genes and genomes.
M Kanehisa, S Goto. Nucleic Acids Res 2000
7

Accelerated neurodegeneration through chaperone-mediated oligomerization of tau.
Laura J Blair, Bryce A Nordhues, Shannon E Hill, K Matthew Scaglione, John C O'Leary, Sarah N Fontaine, Leonid Breydo, Bo Zhang, Pengfei Li, Li Wang,[...]. J Clin Invest 2013
149
7

Common mechanisms in neurodegeneration and neuroinflammation: a BrainNet Europe gene expression microarray study.
Pascal F Durrenberger, Francesca S Fernando, Samira N Kashefi, Tim P Bonnert, Danielle Seilhean, Brahim Nait-Oumesmar, Andrea Schmitt, Peter J Gebicke-Haerter, Peter Falkai, Edna Grünblatt,[...]. J Neural Transm (Vienna) 2015
71
9

Spatio-temporal transcriptome of the human brain.
Hyo Jung Kang, Yuka Imamura Kawasawa, Feng Cheng, Ying Zhu, Xuming Xu, Mingfeng Li, André M M Sousa, Mihovil Pletikos, Kyle A Meyer, Goran Sedmak,[...]. Nature 2011
7


Microarray analysis of hippocampal CA1 neurons implicates early endosomal dysfunction during Alzheimer's disease progression.
Stephen D Ginsberg, Melissa J Alldred, Scott E Counts, Anne M Cataldo, Rachael L Neve, Ying Jiang, Joanne Wuu, Moses V Chao, Elliott J Mufson, Ralph A Nixon,[...]. Biol Psychiatry 2010
183
6

Neuronal gene expression in non-demented individuals with intermediate Alzheimer's Disease neuropathology.
Winnie S Liang, Travis Dunckley, Thomas G Beach, Andrew Grover, Diego Mastroeni, Keri Ramsey, Richard J Caselli, Walter A Kukull, Daniel McKeel, John C Morris,[...]. Neurobiol Aging 2010
57
10


TREM2 variants in Alzheimer's disease.
Rita Guerreiro, Aleksandra Wojtas, Jose Bras, Minerva Carrasquillo, Ekaterina Rogaeva, Elisa Majounie, Carlos Cruchaga, Celeste Sassi, John S K Kauwe, Steven Younkin,[...]. N Engl J Med 2013
6

An epigenetic blockade of cognitive functions in the neurodegenerating brain.
Johannes Gräff, Damien Rei, Ji-Song Guan, Wen-Yuan Wang, Jinsoo Seo, Krista M Hennig, Thomas J F Nieland, Daniel M Fass, Patricia F Kao, Martin Kahn,[...]. Nature 2012
499
6

A genomic pathway approach to a complex disease: axon guidance and Parkinson disease.
Timothy G Lesnick, Spiridon Papapetropoulos, Deborah C Mash, Jarlath Ffrench-Mullen, Lina Shehadeh, Mariza de Andrade, John R Henley, Walter A Rocca, J Eric Ahlskog, Demetrius M Maraganore. PLoS Genet 2007
247
6

A general framework for weighted gene co-expression network analysis.
Bin Zhang, Steve Horvath. Stat Appl Genet Mol Biol 2005
6

Alzheimer's disease: early alterations in brain DNA methylation at ANK1, BIN1, RHBDF2 and other loci.
Philip L De Jager, Gyan Srivastava, Katie Lunnon, Jeremy Burgess, Leonard C Schalkwyk, Lei Yu, Matthew L Eaton, Brendan T Keenan, Jason Ernst, Cristin McCabe,[...]. Nat Neurosci 2014
473
6


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.