A citation-based method for searching scientific literature

An Staes, Francis Impens, Petra Van Damme, Bart Ruttens, Marc Goethals, Hans Demol, Evy Timmerman, Joël Vandekerckhove, Kris Gevaert. Nat Protoc 2011
Times Cited: 127







List of co-cited articles
877 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides.
Kris Gevaert, Marc Goethals, Lennart Martens, Jozef Van Damme, An Staes, Grégoire R Thomas, Joël Vandekerckhove. Nat Biotechnol 2003
445
39

Isotopic labeling of terminal amines in complex samples identifies protein N-termini and protease cleavage products.
Oded Kleifeld, Alain Doucet, Ulrich auf dem Keller, Anna Prudova, Oliver Schilling, Rajesh K Kainthan, Amanda E Starr, Leonard J Foster, Jayachandran N Kizhakkedathu, Christopher M Overall. Nat Biotechnol 2010
366
34

Proteomics analyses reveal the evolutionary conservation and divergence of N-terminal acetyltransferases from yeast and humans.
Thomas Arnesen, Petra Van Damme, Bogdan Polevoda, Kenny Helsens, Rune Evjenth, Niklaas Colaert, Jan Erik Varhaug, Joël Vandekerckhove, Johan R Lillehaug, Fred Sherman,[...]. Proc Natl Acad Sci U S A 2009
357
27

Improved recovery of proteome-informative, protein N-terminal peptides by combined fractional diagonal chromatography (COFRADIC).
An Staes, Petra Van Damme, Kenny Helsens, Hans Demol, Joël Vandekerckhove, Kris Gevaert. Proteomics 2008
122
26

Identifying and quantifying proteolytic events and the natural N terminome by terminal amine isotopic labeling of substrates.
Oded Kleifeld, Alain Doucet, Anna Prudova, Ulrich auf dem Keller, Magda Gioia, Jayachandran N Kizhakkedathu, Christopher M Overall. Nat Protoc 2011
200
23

Global sequencing of proteolytic cleavage sites in apoptosis by specific labeling of protein N termini.
Sami Mahrus, Jonathan C Trinidad, David T Barkan, Andrej Sali, Alma L Burlingame, James A Wells. Cell 2008
333
23

Improved visualization of protein consensus sequences by iceLogo.
Niklaas Colaert, Kenny Helsens, Lennart Martens, Joël Vandekerckhove, Kris Gevaert. Nat Methods 2009
478
22


A review of COFRADIC techniques targeting protein N-terminal acetylation.
Petra Van Damme, Jozef Van Damme, Hans Demol, An Staes, Joël Vandekerckhove, Kris Gevaert. BMC Proc 2009
55
38

NatF contributes to an evolutionary shift in protein N-terminal acetylation and is important for normal chromosome segregation.
Petra Van Damme, Kristine Hole, Ana Pimenta-Marques, Kenny Helsens, Joël Vandekerckhove, Rui G Martinho, Kris Gevaert, Thomas Arnesen. PLoS Genet 2011
122
19

Proteome-wide analysis of protein carboxy termini: C terminomics.
Oliver Schilling, Olivier Barré, Pitter F Huesgen, Christopher M Overall. Nat Methods 2010
113
18

An improved workflow for quantitative N-terminal charge-based fractional diagonal chromatography (ChaFRADIC) to study proteolytic events in Arabidopsis thaliana.
A Saskia Venne, Fiorella A Solari, Frederik Faden, Tomasso Paretti, Nico Dissmeyer, René P Zahedi. Proteomics 2015
56
32

Identification and functional characterization of N-terminally acetylated proteins in Drosophila melanogaster.
Sandra Goetze, Ermir Qeli, Christian Mosimann, An Staes, Bertran Gerrits, Bernd Roschitzki, Sonali Mohanty, Eva M Niederer, Endre Laczko, Evy Timmerman,[...]. PLoS Biol 2009
128
17

Complementary positional proteomics for screening substrates of endo- and exoproteases.
Petra Van Damme, An Staes, Silvia Bronsoms, Kenny Helsens, Niklaas Colaert, Evy Timmerman, Francesc X Aviles, Joël Vandekerckhove, Kris Gevaert. Nat Methods 2010
87
19


N-terminal acetylation of cellular proteins creates specific degradation signals.
Cheol-Sang Hwang, Anna Shemorry, Alexander Varshavsky. Science 2010
425
16

Control of protein quality and stoichiometries by N-terminal acetylation and the N-end rule pathway.
Anna Shemorry, Cheol-Sang Hwang, Alexander Varshavsky. Mol Cell 2013
192
16

Profiling constitutive proteolytic events in vivo.
John C Timmer, Mari Enoksson, Eric Wildfang, Wenhong Zhu, Yoshinobu Igarashi, Jean-Benard Denault, Yuliang Ma, Benjamin Dummitt, Yie-Hwa Chang, Alan E Mast,[...]. Biochem J 2007
119
16

Comparative large scale characterization of plant versus mammal proteins reveals similar and idiosyncratic N-α-acetylation features.
Willy V Bienvenut, David Sumpton, Aude Martinez, Sergio Lilla, Christelle Espagne, Thierry Meinnel, Carmela Giglione. Mol Cell Proteomics 2012
108
15

Multiplex N-terminome analysis of MMP-2 and MMP-9 substrate degradomes by iTRAQ-TAILS quantitative proteomics.
Anna Prudova, Ulrich auf dem Keller, Georgina S Butler, Christopher M Overall. Mol Cell Proteomics 2010
203
15


Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution.
Sooncheol Lee, Botao Liu, Soohyun Lee, Sheng-Xiong Huang, Ben Shen, Shu-Bing Qian. Proc Natl Acad Sci U S A 2012
370
14

Unbiased selective isolation of protein N-terminal peptides from complex proteome samples using phospho tagging (PTAG) and TiO(2)-based depletion.
Geert P M Mommen, Bas van de Waterbeemd, Hugo D Meiring, Gideon Kersten, Albert J R Heck, Ad P J M de Jong. Mol Cell Proteomics 2012
43
32

Positional proteomics reveals differences in N-terminal proteoform stability.
Daria Gawron, Elvis Ndah, Kris Gevaert, Petra Van Damme. Mol Syst Biol 2016
48
29

N-terminal acetylome analyses and functional insights of the N-terminal acetyltransferase NatB.
Petra Van Damme, Marta Lasa, Bogdan Polevoda, Cristina Gazquez, Alberto Elosegui-Artola, Duk Soo Kim, Elena De Juan-Pardo, Kimberly Demeyer, Kristine Hole, Esther Larrea,[...]. Proc Natl Acad Sci U S A 2012
120
13

Caspase-specific and nonspecific in vivo protein processing during Fas-induced apoptosis.
Petra Van Damme, Lennart Martens, Jozef Van Damme, Koen Hugelier, An Staes, Joël Vandekerckhove, Kris Gevaert. Nat Methods 2005
187
13

N-terminomics and proteogenomics, getting off to a good start.
Erica M Hartmann, Jean Armengaud. Proteomics 2014
55
23

Protein Termini and Their Modifications Revealed by Positional Proteomics.
Giada Marino, Ulrich Eckhard, Christopher M Overall. ACS Chem Biol 2015
65
20

Protein N-terminal acetyltransferases: when the start matters.
Kristian K Starheim, Kris Gevaert, Thomas Arnesen. Trends Biochem Sci 2012
194
12

Contemporary positional proteomics strategies to study protein processing.
Kim Plasman, Petra Van Damme, Kris Gevaert. Curr Opin Chem Biol 2013
27
44

Global analysis of the mitochondrial N-proteome identifies a processing peptidase critical for protein stability.
F-Nora Vögtle, Stefanie Wortelkamp, René P Zahedi, Dorothea Becker, Claudia Leidhold, Kris Gevaert, Josef Kellermann, Wolfgang Voos, Albert Sickmann, Nikolaus Pfanner,[...]. Cell 2009
331
12

Proteoform: a single term describing protein complexity.
Lloyd M Smith, Neil L Kelleher. Nat Methods 2013
763
12

ProteomeXchange provides globally coordinated proteomics data submission and dissemination.
Juan A Vizcaíno, Eric W Deutsch, Rui Wang, Attila Csordas, Florian Reisinger, Daniel Ríos, José A Dianes, Zhi Sun, Terry Farrah, Nuno Bandeira,[...]. Nat Biotechnol 2014
12

Proteome TopFIND 3.0 with TopFINDer and PathFINDer: database and analysis tools for the association of protein termini to pre- and post-translational events.
Nikolaus Fortelny, Sharon Yang, Paul Pavlidis, Philipp F Lange, Christopher M Overall. Nucleic Acids Res 2015
74
16

ms_lims, a simple yet powerful open source laboratory information management system for MS-driven proteomics.
Kenny Helsens, Niklaas Colaert, Harald Barsnes, Thilo Muth, Kristian Flikka, An Staes, Evy Timmerman, Steffi Wortelkamp, Albert Sickmann, Joël Vandekerckhove,[...]. Proteomics 2010
64
17



N-terminal protein processing: a comparative proteogenomic analysis.
Stefano Bonissone, Nitin Gupta, Margaret Romine, Ralph A Bradshaw, Pavel A Pevzner. Mol Cell Proteomics 2013
67
16

Protein alpha-N-acetylation studied by N-terminomics.
Petra Van Damme, Thomas Arnesen, Kris Gevaert. FEBS J 2011
64
17

Positional proteomics: selective recovery and analysis of N-terminal proteolytic peptides.
Lucy McDonald, Duncan H L Robertson, Jane L Hurst, Robert J Beynon. Nat Methods 2005
128
11

Proteolytic post-translational modification of proteins: proteomic tools and methodology.
Lindsay D Rogers, Christopher M Overall. Mol Cell Proteomics 2013
86
12

The proteomics of N-terminal methionine cleavage.
Frédéric Frottin, Aude Martinez, Philippe Peynot, Sanghamitra Mitra, Richard C Holz, Carmela Giglione, Thierry Meinnel. Mol Cell Proteomics 2006
260
11

On the size of the active site in proteases. I. Papain.
I Schechter, A Berger. Biochem Biophys Res Commun 1967
10

Proteome-derived peptide libraries allow detailed analysis of the substrate specificities of N(alpha)-acetyltransferases and point to hNaa10p as the post-translational actin N(alpha)-acetyltransferase.
Petra Van Damme, Rune Evjenth, Håvard Foyn, Kimberly Demeyer, Pieter-Jan De Bock, Johan R Lillehaug, Joël Vandekerckhove, Thomas Arnesen, Kris Gevaert. Mol Cell Proteomics 2011
109
10

N-terminal acetylation acts as an avidity enhancer within an interconnected multiprotein complex.
Daniel C Scott, Julie K Monda, Eric J Bennett, J Wade Harper, Brenda A Schulman. Science 2011
189
10


The Arabidopsis metacaspase9 degradome.
Liana Tsiatsiani, Evy Timmerman, Pieter-Jan De Bock, Dominique Vercammen, Simon Stael, Brigitte van de Cotte, An Staes, Marc Goethals, Tine Beunens, Petra Van Damme,[...]. Plant Cell 2013
75
13

Global mapping of the topography and magnitude of proteolytic events in apoptosis.
Melissa M Dix, Gabriel M Simon, Benjamin F Cravatt. Cell 2008
272
10


Probability-based protein identification by searching sequence databases using mass spectrometry data.
D N Perkins, D J Pappin, D M Creasy, J S Cottrell. Electrophoresis 1999
10


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.