A citation-based method for searching scientific literature

Tim R Mercer, Shane Neph, Marcel E Dinger, Joanna Crawford, Martin A Smith, Anne-Marie J Shearwood, Eric Haugen, Cameron P Bracken, Oliver Rackham, John A Stamatoyannopoulos, Aleksandra Filipovska, John S Mattick. Cell 2011
Times Cited: 431







List of co-cited articles
1104 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Sequence and organization of the human mitochondrial genome.
S Anderson, A T Bankier, B G Barrell, M H de Bruijn, A R Coulson, J Drouin, I C Eperon, D P Nierlich, B A Roe, F Sanger,[...]. Nature 1981
21


PNPASE regulates RNA import into mitochondria.
Geng Wang, Hsiao-Wen Chen, Yavuz Oktay, Jin Zhang, Eric L Allen, Geoffrey M Smith, Kelly C Fan, Jason S Hong, Samuel W French, J Michael McCaffery,[...]. Cell 2010
207
14

Human mitochondrial tRNAs: biogenesis, function, structural aspects, and diseases.
Tsutomu Suzuki, Asuteka Nagao, Takeo Suzuki. Annu Rev Genet 2011
311
14

Long noncoding RNAs are generated from the mitochondrial genome and regulated by nuclear-encoded proteins.
Oliver Rackham, Anne-Marie J Shearwood, Tim R Mercer, Stefan M K Davies, John S Mattick, Aleksandra Filipovska. RNA 2011
148
13

RNA processing in human mitochondria.
Maria I G Lopez Sanchez, Tim R Mercer, Stefan M K Davies, Anne-Marie J Shearwood, Karoline K A Nygård, Tara R Richman, John S Mattick, Oliver Rackham, Aleksandra Filipovska. Cell Cycle 2011
146
12

RNase P without RNA: identification and functional reconstitution of the human mitochondrial tRNA processing enzyme.
Johann Holzmann, Peter Frank, Esther Löffler, Keiryn L Bennett, Christopher Gerner, Walter Rossmanith. Cell 2008
350
12

Involvement of human ELAC2 gene product in 3' end processing of mitochondrial tRNAs.
Lien K Brzezniak, Monika Bijata, Roman J Szczesny, Piotr P Stepien. RNA Biol 2011
109
10

MitoCarta2.0: an updated inventory of mammalian mitochondrial proteins.
Sarah E Calvo, Karl R Clauser, Vamsi K Mootha. Nucleic Acids Res 2016
686
9

Mammalian mitochondria have the innate ability to import tRNAs by a mechanism distinct from protein import.
Mary Anne T Rubio, Jesse J Rinehart, Bethany Krett, Stéphane Duvezin-Caubet, Andreas S Reichert, Dieter Söll, Juan D Alfonzo. Proc Natl Acad Sci U S A 2008
96
9

Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA.
R M Andrews, I Kubacka, P F Chinnery, R N Lightowlers, D M Turnbull, N Howell. Nat Genet 1999
9

Maintenance and Expression of Mammalian Mitochondrial DNA.
Claes M Gustafsson, Maria Falkenberg, Nils-Göran Larsson. Annu Rev Biochem 2016
230
9

Live-cell mapping of organelle-associated RNAs via proximity biotinylation combined with protein-RNA crosslinking.
Pornchai Kaewsapsak, David Michael Shechner, William Mallard, John L Rinn, Alice Y Ting. Elife 2017
69
13

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
8

Pre-microRNA and mature microRNA in human mitochondria.
Eric Barrey, Gaelle Saint-Auret, Blandine Bonnamy, Dominique Damas, Orane Boyer, Xavier Gidrol. PLoS One 2011
177
8

Mitochondrial DNA mutations in human disease.
Robert W Taylor, Doug M Turnbull. Nat Rev Genet 2005
8

Systematic analysis of small RNAs associated with human mitochondria by deep sequencing: detailed analysis of mitochondrial associated miRNA.
Lakshmi Sripada, Dhanendra Tomar, Paresh Prajapati, Rochika Singh, Arun Kumar Singh, Rajesh Singh. PLoS One 2012
97
8

Naturally occurring mitochondrial-derived peptides are age-dependent regulators of apoptosis, insulin sensitivity, and inflammatory markers.
Laura J Cobb, Changhan Lee, Jialin Xiao, Kelvin Yen, Richard G Wong, Hiromi K Nakamura, Hemal H Mehta, Qinglei Gao, Carmel Ashur, Derek M Huffman,[...]. Aging (Albany NY) 2016
101
8

Humanin: a harbinger of mitochondrial-derived peptides?
Changhan Lee, Kelvin Yen, Pinchas Cohen. Trends Endocrinol Metab 2013
140
8

tRNA biology in mitochondria.
Thalia Salinas-Giegé, Richard Giegé, Philippe Giegé. Int J Mol Sci 2015
80
10

The Mitochondrial Basis of Aging.
Nuo Sun, Richard J Youle, Toren Finkel. Mol Cell 2016
460
8

MicroRNA directly enhances mitochondrial translation during muscle differentiation.
Xiaorong Zhang, Xinxin Zuo, Bo Yang, Zongran Li, Yuanchao Xue, Yu Zhou, Jie Huang, Xiaolu Zhao, Jie Zhou, Yun Yan,[...]. Cell 2014
241
8

HuR and GRSF1 modulate the nuclear export and mitochondrial localization of the lncRNA RMRP.
Ji Heon Noh, Kyoung Mi Kim, Kotb Abdelmohsen, Je-Hyun Yoon, Amaresh C Panda, Rachel Munk, Jiyoung Kim, Jessica Curtis, Christopher A Moad, Christina M Wohler,[...]. Genes Dev 2016
78
10

Long noncoding RNAs coordinate functions between mitochondria and the nucleus.
Yaru Dong, Takeshi Yoshitomi, Ji-Fan Hu, Jizhe Cui. Epigenetics Chromatin 2017
46
17

GRSF1 regulates RNA processing in mitochondrial RNA granules.
Alexis A Jourdain, Mirko Koppen, Mateusz Wydro, Chris D Rodley, Robert N Lightowlers, Zofia M Chrzanowska-Lightowlers, Jean-Claude Martinou. Cell Metab 2013
123
8

Human mitochondrial RNA decay mediated by PNPase-hSuv3 complex takes place in distinct foci.
Lukasz S Borowski, Andrzej Dziembowski, Monika S Hejnowicz, Piotr P Stepien, Roman J Szczesny. Nucleic Acids Res 2013
98
8

Nuclear miRNA regulates the mitochondrial genome in the heart.
Samarjit Das, Marcella Ferlito, Oliver A Kent, Karen Fox-Talbot, Richard Wang, Delong Liu, Nalini Raghavachari, Yanqin Yang, Sarah J Wheelan, Elizabeth Murphy,[...]. Circ Res 2012
187
7

MicroRNAs identified in highly purified liver-derived mitochondria may play a role in apoptosis.
Betsy T Kren, Phillip Y-P Wong, Aaron Sarver, Xiaoxiao Zhang, Yan Zeng, Clifford J Steer. RNA Biol 2009
142
7

Human mitochondrial mRNAs--like members of all families, similar but different.
Richard J Temperley, Mateusz Wydro, Robert N Lightowlers, Zofia M Chrzanowska-Lightowlers. Biochim Biophys Acta 2010
115
7

The mitochondrial-derived peptide MOTS-c promotes metabolic homeostasis and reduces obesity and insulin resistance.
Changhan Lee, Jennifer Zeng, Brian G Drew, Tamer Sallam, Alejandro Martin-Montalvo, Junxiang Wan, Su-Jeong Kim, Hemal Mehta, Andrea L Hevener, Rafael de Cabo,[...]. Cell Metab 2015
238
7

Humanin peptide suppresses apoptosis by interfering with Bax activation.
Bin Guo, Dayong Zhai, Edelmira Cabezas, Kate Welsh, Shahrzad Nouraini, Arnold C Satterthwait, John C Reed. Nature 2003
401
7


Leber's hereditary optic neuropathy (LHON)-associated ND5 12338T > C mutation altered the assembly and function of complex I, apoptosis and mitophagy.
Juanjuan Zhang, Yanchun Ji, Yuanyuan Lu, Runing Fu, Man Xu, Xiaoling Liu, Min-Xin Guan. Hum Mol Genet 2018
27
25

A Hypertension-Associated tRNAAla Mutation Alters tRNA Metabolism and Mitochondrial Function.
Pingping Jiang, Meng Wang, Ling Xue, Yun Xiao, Jialing Yu, Hui Wang, Juan Yao, Hao Liu, Yanyan Peng, Hanqing Liu,[...]. Mol Cell Biol 2016
36
19

A deafness-associated tRNAHis mutation alters the mitochondrial function, ROS production and membrane potential.
Shasha Gong, Yanyan Peng, Pingping Jiang, Meng Wang, Mingjie Fan, Xinjian Wang, Hong Zhou, Huawei Li, Qingfeng Yan, Taosheng Huang,[...]. Nucleic Acids Res 2014
71
9

The hallmarks of aging.
Carlos López-Otín, Maria A Blasco, Linda Partridge, Manuel Serrano, Guido Kroemer. Cell 2013
7

Ribosome. The complete structure of the 55S mammalian mitochondrial ribosome.
Basil J Greber, Philipp Bieri, Marc Leibundgut, Alexander Leitner, Ruedi Aebersold, Daniel Boehringer, Nenad Ban. Science 2015
226
7

A coronary artery disease-associated tRNAThr mutation altered mitochondrial function, apoptosis and angiogenesis.
Zidong Jia, Ye Zhang, Qiang Li, Zhenzhen Ye, Yuqi Liu, Changzhu Fu, Xiaohui Cang, Meng Wang, Min-Xin Guan. Nucleic Acids Res 2019
27
25

The mitochondrial genome encodes abundant small noncoding RNAs.
Seungil Ro, Hsiu-Yen Ma, Chanjae Park, Nicole Ortogero, Rui Song, Grant W Hennig, Huili Zheng, Yung-Ming Lin, Loredana Moro, Jer-Tsong Hsieh,[...]. Cell Res 2013
87
8

Atlas of Subcellular RNA Localization Revealed by APEX-Seq.
Furqan M Fazal, Shuo Han, Kevin R Parker, Pornchai Kaewsapsak, Jin Xu, Alistair N Boettiger, Howard Y Chang, Alice Y Ting. Cell 2019
116
7

Importing mitochondrial proteins: machineries and mechanisms.
Agnieszka Chacinska, Carla M Koehler, Dusanka Milenkovic, Trevor Lithgow, Nikolaus Pfanner. Cell 2009
846
6

Mitochondrial enzyme rhodanese is essential for 5 S ribosomal RNA import into human mitochondria.
Alexandre Smirnov, Caroline Comte, Anne-Marie Mager-Heckel, Vanessa Addis, Igor A Krasheninnikov, Robert P Martin, Nina Entelis, Ivan Tarassov. J Biol Chem 2010
55
10


Mitochondrial stress engages E2F1 apoptotic signaling to cause deafness.
Nuno Raimundo, Lei Song, Timothy E Shutt, Sharen E McKay, Justin Cotney, Min-Xin Guan, Thomas C Gilliland, David Hohuan, Joseph Santos-Sacchi, Gerald S Shadel. Cell 2012
130
6

A hypertension-associated mitochondrial DNA mutation introduces an m1G37 modification into tRNAMet, altering its structure and function.
Mi Zhou, Ling Xue, Yaru Chen, Haiying Li, Qiufen He, Bibin Wang, Feilong Meng, Meng Wang, Min-Xin Guan. J Biol Chem 2018
32
18


A deafness-associated tRNAAsp mutation alters the m1G37 modification, aminoacylation and stability of tRNAAsp and mitochondrial function.
Meng Wang, Yanyan Peng, Jing Zheng, Binjiao Zheng, Xiaofen Jin, Hao Liu, Yong Wang, Xiaowen Tang, Taosheng Huang, Pingping Jiang,[...]. Nucleic Acids Res 2016
21
28

A Deafness- and Diabetes-associated tRNA Mutation Causes Deficient Pseudouridinylation at Position 55 in tRNAGlu and Mitochondrial Dysfunction.
Meng Wang, Hao Liu, Jing Zheng, Bobei Chen, Mi Zhou, Wenlu Fan, Hen Wang, Xiaoyang Liang, Xiaolong Zhou, Gilbert Eriani,[...]. J Biol Chem 2016
34
17


ROS function in redox signaling and oxidative stress.
Michael Schieber, Navdeep S Chandel. Curr Biol 2014
6


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.