A citation-based method for searching scientific literature

Tim R Mercer, Shane Neph, Marcel E Dinger, Joanna Crawford, Martin A Smith, Anne-Marie J Shearwood, Eric Haugen, Cameron P Bracken, Oliver Rackham, John A Stamatoyannopoulos, Aleksandra Filipovska, John S Mattick. Cell 2011
Times Cited: 455







List of co-cited articles
1209 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Sequence and organization of the human mitochondrial genome.
S Anderson, A T Bankier, B G Barrell, M H de Bruijn, A R Coulson, J Drouin, I C Eperon, D P Nierlich, B A Roe, F Sanger,[...]. Nature 1981
22

Long noncoding RNAs are generated from the mitochondrial genome and regulated by nuclear-encoded proteins.
Oliver Rackham, Anne-Marie J Shearwood, Tim R Mercer, Stefan M K Davies, John S Mattick, Aleksandra Filipovska. RNA 2011
158
16

RNase P without RNA: identification and functional reconstitution of the human mitochondrial tRNA processing enzyme.
Johann Holzmann, Peter Frank, Esther Löffler, Keiryn L Bennett, Christopher Gerner, Walter Rossmanith. Cell 2008
363
15

PNPASE regulates RNA import into mitochondria.
Geng Wang, Hsiao-Wen Chen, Yavuz Oktay, Jin Zhang, Eric L Allen, Geoffrey M Smith, Kelly C Fan, Jason S Hong, Samuel W French, J Michael McCaffery,[...]. Cell 2010
216
14

Involvement of human ELAC2 gene product in 3' end processing of mitochondrial tRNAs.
Lien K Brzezniak, Monika Bijata, Roman J Szczesny, Piotr P Stepien. RNA Biol 2011
116
14

MicroRNA directly enhances mitochondrial translation during muscle differentiation.
Xiaorong Zhang, Xinxin Zuo, Bo Yang, Zongran Li, Yuanchao Xue, Yu Zhou, Jie Huang, Xiaolu Zhao, Jie Zhou, Yun Yan,[...]. Cell 2014
255
13

RNA processing in human mitochondria.
Maria I G Lopez Sanchez, Tim R Mercer, Stefan M K Davies, Anne-Marie J Shearwood, Karoline K A Nygård, Tara R Richman, John S Mattick, Oliver Rackham, Aleksandra Filipovska. Cell Cycle 2011
151
12

The mitochondrial genome encodes abundant small noncoding RNAs.
Seungil Ro, Hsiu-Yen Ma, Chanjae Park, Nicole Ortogero, Rui Song, Grant W Hennig, Huili Zheng, Yung-Ming Lin, Loredana Moro, Jer-Tsong Hsieh,[...]. Cell Res 2013
94
12

Non-coding RNAs: the dark side of nuclear-mitochondrial communication.
Roberto Vendramin, Jean-Christophe Marine, Eleonora Leucci. EMBO J 2017
56
21

Human mitochondrial RNA decay mediated by PNPase-hSuv3 complex takes place in distinct foci.
Lukasz S Borowski, Andrzej Dziembowski, Monika S Hejnowicz, Piotr P Stepien, Roman J Szczesny. Nucleic Acids Res 2013
106
10

Maintenance and Expression of Mammalian Mitochondrial DNA.
Claes M Gustafsson, Maria Falkenberg, Nils-Göran Larsson. Annu Rev Biochem 2016
250
9

GRSF1 regulates RNA processing in mitochondrial RNA granules.
Alexis A Jourdain, Mirko Koppen, Mateusz Wydro, Chris D Rodley, Robert N Lightowlers, Zofia M Chrzanowska-Lightowlers, Jean-Claude Martinou. Cell Metab 2013
127
9

Mitochondrial double-stranded RNA triggers antiviral signalling in humans.
Ashish Dhir, Somdutta Dhir, Lukasz S Borowski, Laura Jimenez, Michael Teitell, Agnès Rötig, Yanick J Crow, Gillian I Rice, Darragh Duffy, Christelle Tamby,[...]. Nature 2018
162
9

Nuclear miRNA regulates the mitochondrial genome in the heart.
Samarjit Das, Marcella Ferlito, Oliver A Kent, Karen Fox-Talbot, Richard Wang, Delong Liu, Nalini Raghavachari, Yanqin Yang, Sarah J Wheelan, Elizabeth Murphy,[...]. Circ Res 2012
195
9

Pre-microRNA and mature microRNA in human mitochondria.
Eric Barrey, Gaelle Saint-Auret, Blandine Bonnamy, Dominique Damas, Orane Boyer, Xavier Gidrol. PLoS One 2011
184
9

Nuclear outsourcing of RNA interference components to human mitochondria.
Simonetta Bandiera, Silvia Rüberg, Muriel Girard, Nicolas Cagnard, Sylvain Hanein, Dominique Chrétien, Arnold Munnich, Stanislas Lyonnet, Alexandra Henrion-Caude. PLoS One 2011
157
9

HuR and GRSF1 modulate the nuclear export and mitochondrial localization of the lncRNA RMRP.
Ji Heon Noh, Kyoung Mi Kim, Kotb Abdelmohsen, Je-Hyun Yoon, Amaresh C Panda, Rachel Munk, Jiyoung Kim, Jessica Curtis, Christopher A Moad, Christina M Wohler,[...]. Genes Dev 2016
89
10

Long noncoding RNAs coordinate functions between mitochondria and the nucleus.
Yaru Dong, Takeshi Yoshitomi, Ji-Fan Hu, Jizhe Cui. Epigenetics Chromatin 2017
51
17

Naturally occurring mitochondrial-derived peptides are age-dependent regulators of apoptosis, insulin sensitivity, and inflammatory markers.
Laura J Cobb, Changhan Lee, Jialin Xiao, Kelvin Yen, Richard G Wong, Hiromi K Nakamura, Hemal H Mehta, Qinglei Gao, Carmel Ashur, Derek M Huffman,[...]. Aging (Albany NY) 2016
107
8

Human mitochondrial tRNAs: biogenesis, function, structural aspects, and diseases.
Tsutomu Suzuki, Asuteka Nagao, Takeo Suzuki. Annu Rev Genet 2011
318
8

MicroRNAs identified in highly purified liver-derived mitochondria may play a role in apoptosis.
Betsy T Kren, Phillip Y-P Wong, Aaron Sarver, Xiaoxiao Zhang, Yan Zeng, Clifford J Steer. RNA Biol 2009
147
8

Nuclear localization of the mitochondrial ncRNAs in normal and cancer cells.
Eduardo Landerer, Jaime Villegas, Veronica A Burzio, Luciana Oliveira, Claudio Villota, Constanza Lopez, Franko Restovic, Ronny Martinez, Octavio Castillo, Luis O Burzio. Cell Oncol (Dordr) 2011
48
16

Systematic analysis of small RNAs associated with human mitochondria by deep sequencing: detailed analysis of mitochondrial associated miRNA.
Lakshmi Sripada, Dhanendra Tomar, Paresh Prajapati, Rochika Singh, Arun Kumar Singh, Rajesh Singh. PLoS One 2012
101
8

Melanoma addiction to the long non-coding RNA SAMMSON.
Eleonora Leucci, Roberto Vendramin, Marco Spinazzi, Patrick Laurette, Mark Fiers, Jasper Wouters, Enrico Radaelli, Sven Eyckerman, Carina Leonelli, Katrien Vanderheyden,[...]. Nature 2016
277
8

Humanin: a harbinger of mitochondrial-derived peptides?
Changhan Lee, Kelvin Yen, Pinchas Cohen. Trends Endocrinol Metab 2013
150
7

The mitochondrial RNA-binding protein GRSF1 localizes to RNA granules and is required for posttranscriptional mitochondrial gene expression.
Hana Antonicka, Florin Sasarman, Tamiko Nishimura, Vincent Paupe, Eric A Shoubridge. Cell Metab 2013
123
7

Hierarchical RNA Processing Is Required for Mitochondrial Ribosome Assembly.
Oliver Rackham, Jakob D Busch, Stanka Matic, Stefan J Siira, Irina Kuznetsova, Ilian Atanassov, Judith A Ermer, Anne-Marie J Shearwood, Tara R Richman, James B Stewart,[...]. Cell Rep 2016
61
11

Human mitochondrial mRNAs--like members of all families, similar but different.
Richard J Temperley, Mateusz Wydro, Robert N Lightowlers, Zofia M Chrzanowska-Lightowlers. Biochim Biophys Acta 2010
116
7

Mammalian mitochondria have the innate ability to import tRNAs by a mechanism distinct from protein import.
Mary Anne T Rubio, Jesse J Rinehart, Bethany Krett, Stéphane Duvezin-Caubet, Andreas S Reichert, Dieter Söll, Juan D Alfonzo. Proc Natl Acad Sci U S A 2008
98
7

Mitochondrial peptides modulate mitochondrial function during cellular senescence.
Su-Jeong Kim, Hemal H Mehta, Junxiang Wan, Chisaka Kuehnemann, Jingcheng Chen, Ji-Fan Hu, Andrew R Hoffman, Pinchas Cohen. Aging (Albany NY) 2018
48
14

The mitochondrial-derived peptide MOTS-c promotes metabolic homeostasis and reduces obesity and insulin resistance.
Changhan Lee, Jennifer Zeng, Brian G Drew, Tamer Sallam, Alejandro Martin-Montalvo, Junxiang Wan, Su-Jeong Kim, Hemal Mehta, Andrea L Hevener, Rafael de Cabo,[...]. Cell Metab 2015
255
7

A rescue factor abolishing neuronal cell death by a wide spectrum of familial Alzheimer's disease genes and Abeta.
Y Hashimoto, T Niikura, H Tajima, T Yasukawa, H Sudo, Y Ito, Y Kita, M Kawasumi, K Kouyama, M Doyu,[...]. Proc Natl Acad Sci U S A 2001
401
7

Two novel lncRNAs discovered in human mitochondrial DNA using PacBio full-length transcriptome data.
Shan Gao, Xiaoxuan Tian, Hong Chang, Yu Sun, Zhenfeng Wu, Zhi Cheng, Pengzhi Dong, Qiang Zhao, Jishou Ruan, Wenjun Bu. Mitochondrion 2018
36
19


Translational Regulation of the Mitochondrial Genome Following Redistribution of Mitochondrial MicroRNA in the Diabetic Heart.
Rajaganapathi Jagannathan, Dharendra Thapa, Cody E Nichols, Danielle L Shepherd, Janelle C Stricker, Tara L Croston, Walter A Baseler, Sara E Lewis, Ivan Martinez, John M Hollander. Circ Cardiovasc Genet 2015
59
11

Expression of a family of noncoding mitochondrial RNAs distinguishes normal from cancer cells.
Verónica A Burzio, Claudio Villota, Jaime Villegas, Eduardo Landerer, Enrique Boccardo, Luisa L Villa, Ronny Martínez, Constanza Lopez, Fancy Gaete, Viviana Toro,[...]. Proc Natl Acad Sci U S A 2009
71
9


Atlas of Subcellular RNA Localization Revealed by APEX-Seq.
Furqan M Fazal, Shuo Han, Kevin R Parker, Pornchai Kaewsapsak, Jin Xu, Alistair N Boettiger, Howard Y Chang, Alice Y Ting. Cell 2019
133
7

SAMMSON fosters cancer cell fitness by concertedly enhancing mitochondrial and cytosolic translation.
Roberto Vendramin, Yvessa Verheyden, Hideaki Ishikawa, Lucas Goedert, Emilien Nicolas, Kritika Saraf, Alexandros Armaos, Riccardo Delli Ponti, Keichi Izumikawa, Pieter Mestdagh,[...]. Nat Struct Mol Biol 2018
43
16

Live-cell mapping of organelle-associated RNAs via proximity biotinylation combined with protein-RNA crosslinking.
Pornchai Kaewsapsak, David Michael Shechner, William Mallard, John L Rinn, Alice Y Ting. Elife 2017
75
9

Mitochondria and cancer.
Douglas C Wallace. Nat Rev Cancer 2012
6

The Mitochondrial-Derived Peptide Humanin Protects RPE Cells From Oxidative Stress, Senescence, and Mitochondrial Dysfunction.
Parameswaran G Sreekumar, Keijiro Ishikawa, Chris Spee, Hemal H Mehta, Junxiang Wan, Kelvin Yen, Pinchas Cohen, Ram Kannan, David R Hinton. Invest Ophthalmol Vis Sci 2016
86
6

Humanin: a novel central regulator of peripheral insulin action.
Radhika H Muzumdar, Derek M Huffman, Gil Atzmon, Christoph Buettner, Laura J Cobb, Sigal Fishman, Temuri Budagov, Lingguang Cui, Francine H Einstein, Aruna Poduval,[...]. PLoS One 2009
144
6

Identification of a novel human nuclear-encoded mitochondrial poly(A) polymerase.
Rafal Tomecki, Aleksandra Dmochowska, Kamil Gewartowski, Andrzej Dziembowski, Piotr P Stepien. Nucleic Acids Res 2004
123
6

Animal mitochondrial genomes.
J L Boore. Nucleic Acids Res 1999
6

Concerted regulation of mitochondrial and nuclear non-coding RNAs by a dual-targeted RNase Z.
Stefan J Siira, Giulia Rossetti, Tara R Richman, Kara Perks, Judith A Ermer, Irina Kuznetsova, Laetitia Hughes, Anne-Marie J Shearwood, Helena M Viola, Livia C Hool,[...]. EMBO Rep 2018
26
23

The post-transcriptional life of mammalian mitochondrial RNA.
Joanna Rorbach, Michal Minczuk. Biochem J 2012
85
7

A coronary artery disease-associated tRNAThr mutation altered mitochondrial function, apoptosis and angiogenesis.
Zidong Jia, Ye Zhang, Qiang Li, Zhenzhen Ye, Yuqi Liu, Changzhu Fu, Xiaohui Cang, Meng Wang, Min-Xin Guan. Nucleic Acids Res 2019
31
19

The Mitochondrial Basis of Aging.
Nuo Sun, Richard J Youle, Toren Finkel. Mol Cell 2016
500
6


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.