A citation-based method for searching scientific literature

Gary D Wu, Jun Chen, Christian Hoffmann, Kyle Bittinger, Ying-Yu Chen, Sue A Keilbaugh, Meenakshi Bewtra, Dan Knights, William A Walters, Rob Knight, Rohini Sinha, Erin Gilroy, Kernika Gupta, Robert Baldassano, Lisa Nessel, Hongzhe Li, Frederic D Bushman, James D Lewis. Science 2011
Times Cited: 3078







List of co-cited articles
830 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Diet rapidly and reproducibly alters the human gut microbiome.
Lawrence A David, Corinne F Maurice, Rachel N Carmody, David B Gootenberg, Julie E Button, Benjamin E Wolfe, Alisha V Ling, A Sloan Devlin, Yug Varma, Michael A Fischbach,[...]. Nature 2014
34

Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa.
Carlotta De Filippo, Duccio Cavalieri, Monica Di Paola, Matteo Ramazzotti, Jean Baptiste Poullet, Sebastien Massart, Silvia Collini, Giuseppe Pieraccini, Paolo Lionetti. Proc Natl Acad Sci U S A 2010
19

Human gut microbiome viewed across age and geography.
Tanya Yatsunenko, Federico E Rey, Mark J Manary, Indi Trehan, Maria Gloria Dominguez-Bello, Monica Contreras, Magda Magris, Glida Hidalgo, Robert N Baldassano, Andrey P Anokhin,[...]. Nature 2012
19

Influence of diet on the gut microbiome and implications for human health.
Rasnik K Singh, Hsin-Wen Chang, Di Yan, Kristina M Lee, Derya Ucmak, Kirsten Wong, Michael Abrouk, Benjamin Farahnik, Mio Nakamura, Tian Hao Zhu,[...]. J Transl Med 2017
656
15

Enterotypes of the human gut microbiome.
Manimozhiyan Arumugam, Jeroen Raes, Eric Pelletier, Denis Le Paslier, Takuji Yamada, Daniel R Mende, Gabriel R Fernandes, Julien Tap, Thomas Bruls, Jean-Michel Batto,[...]. Nature 2011
14

An obesity-associated gut microbiome with increased capacity for energy harvest.
Peter J Turnbaugh, Ruth E Ley, Michael A Mahowald, Vincent Magrini, Elaine R Mardis, Jeffrey I Gordon. Nature 2006
13

High-level adherence to a Mediterranean diet beneficially impacts the gut microbiota and associated metabolome.
Francesca De Filippis, Nicoletta Pellegrini, Lucia Vannini, Ian B Jeffery, Antonietta La Storia, Luca Laghi, Diana I Serrazanetti, Raffaella Di Cagno, Ilario Ferrocino, Camilla Lazzi,[...]. Gut 2016
527
11

Metabolic endotoxemia initiates obesity and insulin resistance.
Patrice D Cani, Jacques Amar, Miguel Angel Iglesias, Marjorie Poggi, Claude Knauf, Delphine Bastelica, Audrey M Neyrinck, Francesca Fava, Kieran M Tuohy, Chantal Chabo,[...]. Diabetes 2007
11


A human gut microbial gene catalogue established by metagenomic sequencing.
Junjie Qin, Ruiqiang Li, Jeroen Raes, Manimozhiyan Arumugam, Kristoffer Solvsten Burgdorf, Chaysavanh Manichanh, Trine Nielsen, Nicolas Pons, Florence Levenez, Takuji Yamada,[...]. Nature 2010
10

Environment dominates over host genetics in shaping human gut microbiota.
Daphna Rothschild, Omer Weissbrod, Elad Barkan, Alexander Kurilshikov, Tal Korem, David Zeevi, Paul I Costea, Anastasia Godneva, Iris N Kalka, Noam Bar,[...]. Nature 2018
810
10

The role of short-chain fatty acids in the interplay between diet, gut microbiota, and host energy metabolism.
Gijs den Besten, Karen van Eunen, Albert K Groen, Koen Venema, Dirk-Jan Reijngoud, Barbara M Bakker. J Lipid Res 2013
9

Richness of human gut microbiome correlates with metabolic markers.
Emmanuelle Le Chatelier, Trine Nielsen, Junjie Qin, Edi Prifti, Falk Hildebrand, Gwen Falony, Mathieu Almeida, Manimozhiyan Arumugam, Jean-Michel Batto, Sean Kennedy,[...]. Nature 2013
9

Intestinal microbiota metabolism of L-carnitine, a nutrient in red meat, promotes atherosclerosis.
Robert A Koeth, Zeneng Wang, Bruce S Levison, Jennifer A Buffa, Elin Org, Brendan T Sheehy, Earl B Britt, Xiaoming Fu, Yuping Wu, Lin Li,[...]. Nat Med 2013
9

Metagenomic biomarker discovery and explanation.
Nicola Segata, Jacques Izard, Levi Waldron, Dirk Gevers, Larisa Miropolsky, Wendy S Garrett, Curtis Huttenhower. Genome Biol 2011
9

Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity.
Alexandra Zhernakova, Alexander Kurilshikov, Marc Jan Bonder, Ettje F Tigchelaar, Melanie Schirmer, Tommi Vatanen, Zlatan Mujagic, Arnau Vich Vila, Gwen Falony, Sara Vieira-Silva,[...]. Science 2016
726
9

Age-related changes in gut microbiota composition from newborn to centenarian: a cross-sectional study.
Toshitaka Odamaki, Kumiko Kato, Hirosuke Sugahara, Nanami Hashikura, Sachiko Takahashi, Jin-Zhong Xiao, Fumiaki Abe, Ro Osawa. BMC Microbiol 2016
435
8

A metagenome-wide association study of gut microbiota in type 2 diabetes.
Junjie Qin, Yingrui Li, Zhiming Cai, Shenghui Li, Jianfeng Zhu, Fan Zhang, Suisha Liang, Wenwei Zhang, Yuanlin Guan, Dongqian Shen,[...]. Nature 2012
8

The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice.
Peter J Turnbaugh, Vanessa K Ridaura, Jeremiah J Faith, Federico E Rey, Rob Knight, Jeffrey I Gordon. Sci Transl Med 2009
8

DADA2: High-resolution sample inference from Illumina amplicon data.
Benjamin J Callahan, Paul J McMurdie, Michael J Rosen, Andrew W Han, Amy Jo A Johnson, Susan P Holmes. Nat Methods 2016
8

Gut microbiome of the Hadza hunter-gatherers.
Stephanie L Schnorr, Marco Candela, Simone Rampelli, Manuela Centanni, Clarissa Consolandi, Giulia Basaglia, Silvia Turroni, Elena Biagi, Clelia Peano, Marco Severgnini,[...]. Nat Commun 2014
569
8

Diet-induced obesity is linked to marked but reversible alterations in the mouse distal gut microbiome.
Peter J Turnbaugh, Fredrik Bäckhed, Lucinda Fulton, Jeffrey I Gordon. Cell Host Microbe 2008
7

Host-bacterial mutualism in the human intestine.
Fredrik Bäckhed, Ruth E Ley, Justin L Sonnenburg, Daniel A Peterson, Jeffrey I Gordon. Science 2005
7

The human microbiome project.
Peter J Turnbaugh, Ruth E Ley, Micah Hamady, Claire M Fraser-Liggett, Rob Knight, Jeffrey I Gordon. Nature 2007
7

A core gut microbiome in obese and lean twins.
Peter J Turnbaugh, Micah Hamady, Tanya Yatsunenko, Brandi L Cantarel, Alexis Duncan, Ruth E Ley, Mitchell L Sogin, William J Jones, Bruce A Roe, Jason P Affourtit,[...]. Nature 2009
7

Daily Sampling Reveals Personalized Diet-Microbiome Associations in Humans.
Abigail J Johnson, Pajau Vangay, Gabriel A Al-Ghalith, Benjamin M Hillmann, Tonya L Ward, Robin R Shields-Cutler, Austin D Kim, Anna Konstantinovna Shmagel, Arzang N Syed, Jens Walter,[...]. Cell Host Microbe 2019
158
7

Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity.
Amandine Everard, Clara Belzer, Lucie Geurts, Janneke P Ouwerkerk, Céline Druart, Laure B Bindels, Yves Guiot, Muriel Derrien, Giulio G Muccioli, Nathalie M Delzenne,[...]. Proc Natl Acad Sci U S A 2013
7

Changes in gut microbiota control metabolic endotoxemia-induced inflammation in high-fat diet-induced obesity and diabetes in mice.
Patrice D Cani, Rodrigo Bibiloni, Claude Knauf, Aurélie Waget, Audrey M Neyrinck, Nathalie M Delzenne, Rémy Burcelin. Diabetes 2008
7

Improvement of Insulin Sensitivity after Lean Donor Feces in Metabolic Syndrome Is Driven by Baseline Intestinal Microbiota Composition.
Ruud S Kootte, Evgeni Levin, Jarkko Salojärvi, Loek P Smits, Annick V Hartstra, Shanti D Udayappan, Gerben Hermes, Kristien E Bouter, Annefleur M Koopen, Jens J Holst,[...]. Cell Metab 2017
327
7

From Dietary Fiber to Host Physiology: Short-Chain Fatty Acids as Key Bacterial Metabolites.
Ara Koh, Filipe De Vadder, Petia Kovatcheva-Datchary, Fredrik Bäckhed. Cell 2016
7

Microbial ecology: human gut microbes associated with obesity.
Ruth E Ley, Peter J Turnbaugh, Samuel Klein, Jeffrey I Gordon. Nature 2006
7

What is the Healthy Gut Microbiota Composition? A Changing Ecosystem across Age, Environment, Diet, and Diseases.
Emanuele Rinninella, Pauline Raoul, Marco Cintoni, Francesco Franceschi, Giacinto Abele Donato Miggiano, Antonio Gasbarrini, Maria Cristina Mele. Microorganisms 2019
460
7

A randomised trial of the effect of omega-3 polyunsaturated fatty acid supplements on the human intestinal microbiota.
Henry Watson, Suparna Mitra, Fiona C Croden, Morag Taylor, Henry M Wood, Sarah L Perry, Jade A Spencer, Phil Quirke, Giles J Toogood, Clare L Lawton,[...]. Gut 2018
140
6


Commensal Bifidobacterium promotes antitumor immunity and facilitates anti-PD-L1 efficacy.
Ayelet Sivan, Leticia Corrales, Nathaniel Hubert, Jason B Williams, Keston Aquino-Michaels, Zachary M Earley, Franco W Benyamin, Yuk Man Lei, Bana Jabri, Maria-Luisa Alegre,[...]. Science 2015
6

Gut microbiome influences efficacy of PD-1-based immunotherapy against epithelial tumors.
Bertrand Routy, Emmanuelle Le Chatelier, Lisa Derosa, Connie P M Duong, Maryam Tidjani Alou, Romain Daillère, Aurélie Fluckiger, Meriem Messaoudene, Conrad Rauber, Maria P Roberti,[...]. Science 2018
6

Short Chain Fatty Acids (SCFAs)-Mediated Gut Epithelial and Immune Regulation and Its Relevance for Inflammatory Bowel Diseases.
Daniela Parada Venegas, Marjorie K De la Fuente, Glauben Landskron, María Julieta González, Rodrigo Quera, Gerard Dijkstra, Hermie J M Harmsen, Klaas Nico Faber, Marcela A Hermoso. Front Immunol 2019
485
6

Gut microbiota functions: metabolism of nutrients and other food components.
Ian Rowland, Glenn Gibson, Almut Heinken, Karen Scott, Jonathan Swann, Ines Thiele, Kieran Tuohy. Eur J Nutr 2018
576
6

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools.
Christian Quast, Elmar Pruesse, Pelin Yilmaz, Jan Gerken, Timmy Schweer, Pablo Yarza, Jörg Peplies, Frank Oliver Glöckner. Nucleic Acids Res 2013
6

Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease.
Zeneng Wang, Elizabeth Klipfell, Brian J Bennett, Robert Koeth, Bruce S Levison, Brandon Dugar, Ariel E Feldstein, Earl B Britt, Xiaoming Fu, Yoon-Mi Chung,[...]. Nature 2011
6

Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells.
Yukihiro Furusawa, Yuuki Obata, Shinji Fukuda, Takaho A Endo, Gaku Nakato, Daisuke Takahashi, Yumiko Nakanishi, Chikako Uetake, Keiko Kato, Tamotsu Kato,[...]. Nature 2013
6

American Gut: an Open Platform for Citizen Science Microbiome Research.
Daniel McDonald, Embriette Hyde, Justine W Debelius, James T Morton, Antonio Gonzalez, Gail Ackermann, Alexander A Aksenov, Bahar Behsaz, Caitriona Brennan, Yingfeng Chen,[...]. mSystems 2018
245
6

Personalized Nutrition by Prediction of Glycemic Responses.
David Zeevi, Tal Korem, Niv Zmora, David Israeli, Daphna Rothschild, Adina Weinberger, Orly Ben-Yacov, Dar Lador, Tali Avnit-Sagi, Maya Lotan-Pompan,[...]. Cell 2015
884
6

Changes in gut microbiota control inflammation in obese mice through a mechanism involving GLP-2-driven improvement of gut permeability.
P D Cani, S Possemiers, T Van de Wiele, Y Guiot, A Everard, O Rottier, L Geurts, D Naslain, A Neyrinck, D M Lambert,[...]. Gut 2009
6

Dynamics of Human Gut Microbiota and Short-Chain Fatty Acids in Response to Dietary Interventions with Three Fermentable Fibers.
Nielson T Baxter, Alexander W Schmidt, Arvind Venkataraman, Kwi S Kim, Clive Waldron, Thomas M Schmidt. mBio 2019
205
6

Transfer of intestinal microbiota from lean donors increases insulin sensitivity in individuals with metabolic syndrome.
Anne Vrieze, Els Van Nood, Frits Holleman, Jarkko Salojärvi, Ruud S Kootte, Joep F W M Bartelsman, Geesje M Dallinga-Thie, Mariette T Ackermans, Mireille J Serlie, Raish Oozeer,[...]. Gastroenterology 2012
6

Dominant and diet-responsive groups of bacteria within the human colonic microbiota.
Alan W Walker, Jennifer Ince, Sylvia H Duncan, Lucy M Webster, Grietje Holtrop, Xiaolei Ze, David Brown, Mark D Stares, Paul Scott, Aurore Bergerat,[...]. ISME J 2011
860
6

Akkermansia muciniphila gen. nov., sp. nov., a human intestinal mucin-degrading bacterium.
Muriel Derrien, Elaine E Vaughan, Caroline M Plugge, Willem M de Vos. Int J Syst Evol Microbiol 2004
834
6

The long-term stability of the human gut microbiota.
Jeremiah J Faith, Janaki L Guruge, Mark Charbonneau, Sathish Subramanian, Henning Seedorf, Andrew L Goodman, Jose C Clemente, Rob Knight, Andrew C Heath, Rudolph L Leibel,[...]. Science 2013
940
6

Diversity of the human intestinal microbial flora.
Paul B Eckburg, Elisabeth M Bik, Charles N Bernstein, Elizabeth Purdom, Les Dethlefsen, Michael Sargent, Steven R Gill, Karen E Nelson, David A Relman. Science 2005
6


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.