Krzysztof Gorgolewski, Christopher D Burns, Cindee Madison, Dav Clark, Yaroslav O Halchenko, Michael L Waskom, Satrajit S Ghosh. Front Neuroinform 2011
Times Cited: 620
Times Cited: 620
Times Cited
Times Co-cited
Similarity
fMRIPrep: a robust preprocessing pipeline for functional MRI.
Oscar Esteban, Christopher J Markiewicz, Ross W Blair, Craig A Moodie, A Ilkay Isik, Asier Erramuzpe, James D Kent, Mathias Goncalves, Elizabeth DuPre, Madeleine Snyder,[...]. Nat Methods 2019
Oscar Esteban, Christopher J Markiewicz, Ross W Blair, Craig A Moodie, A Ilkay Isik, Asier Erramuzpe, James D Kent, Mathias Goncalves, Elizabeth DuPre, Madeleine Snyder,[...]. Nat Methods 2019
59
N4ITK: improved N3 bias correction.
Nicholas J Tustison, Brian B Avants, Philip A Cook, Yuanjie Zheng, Alexander Egan, Paul A Yushkevich, James C Gee. IEEE Trans Med Imaging 2010
Nicholas J Tustison, Brian B Avants, Philip A Cook, Yuanjie Zheng, Alexander Egan, Paul A Yushkevich, James C Gee. IEEE Trans Med Imaging 2010
43
Symmetric diffeomorphic image registration with cross-correlation: evaluating automated labeling of elderly and neurodegenerative brain.
B B Avants, C L Epstein, M Grossman, J C Gee. Med Image Anal 2008
B B Avants, C L Epstein, M Grossman, J C Gee. Med Image Anal 2008
35
Segmentation of brain MR images through a hidden Markov random field model and the expectation-maximization algorithm.
Y Zhang, M Brady, S Smith. IEEE Trans Med Imaging 2001
Y Zhang, M Brady, S Smith. IEEE Trans Med Imaging 2001
34
Accurate and robust brain image alignment using boundary-based registration.
Douglas N Greve, Bruce Fischl. Neuroimage 2009
Douglas N Greve, Bruce Fischl. Neuroimage 2009
34
AFNI: software for analysis and visualization of functional magnetic resonance neuroimages.
R W Cox. Comput Biomed Res 1996
R W Cox. Comput Biomed Res 1996
32
Machine learning for neuroimaging with scikit-learn.
Alexandre Abraham, Fabian Pedregosa, Michael Eickenberg, Philippe Gervais, Andreas Mueller, Jean Kossaifi, Alexandre Gramfort, Bertrand Thirion, Gaël Varoquaux. Front Neuroinform 2014
Alexandre Abraham, Fabian Pedregosa, Michael Eickenberg, Philippe Gervais, Andreas Mueller, Jean Kossaifi, Alexandre Gramfort, Bertrand Thirion, Gaël Varoquaux. Front Neuroinform 2014
26
Methods to detect, characterize, and remove motion artifact in resting state fMRI.
Jonathan D Power, Anish Mitra, Timothy O Laumann, Abraham Z Snyder, Bradley L Schlaggar, Steven E Petersen. Neuroimage 2014
Jonathan D Power, Anish Mitra, Timothy O Laumann, Abraham Z Snyder, Bradley L Schlaggar, Steven E Petersen. Neuroimage 2014
25
FSL.
Mark Jenkinson, Christian F Beckmann, Timothy E J Behrens, Mark W Woolrich, Stephen M Smith. Neuroimage 2012
Mark Jenkinson, Christian F Beckmann, Timothy E J Behrens, Mark W Woolrich, Stephen M Smith. Neuroimage 2012
24
A component based noise correction method (CompCor) for BOLD and perfusion based fMRI.
Yashar Behzadi, Khaled Restom, Joy Liau, Thomas T Liu. Neuroimage 2007
Yashar Behzadi, Khaled Restom, Joy Liau, Thomas T Liu. Neuroimage 2007
23
Improved optimization for the robust and accurate linear registration and motion correction of brain images.
Mark Jenkinson, Peter Bannister, Michael Brady, Stephen Smith. Neuroimage 2002
Mark Jenkinson, Peter Bannister, Michael Brady, Stephen Smith. Neuroimage 2002
23
Cortical surface-based analysis. I. Segmentation and surface reconstruction.
A M Dale, B Fischl, M I Sereno. Neuroimage 1999
A M Dale, B Fischl, M I Sereno. Neuroimage 1999
19
Spurious but systematic correlations in functional connectivity MRI networks arise from subject motion.
Jonathan D Power, Kelly A Barnes, Abraham Z Snyder, Bradley L Schlaggar, Steven E Petersen. Neuroimage 2012
Jonathan D Power, Kelly A Barnes, Abraham Z Snyder, Bradley L Schlaggar, Steven E Petersen. Neuroimage 2012
18
Advances in functional and structural MR image analysis and implementation as FSL.
Stephen M Smith, Mark Jenkinson, Mark W Woolrich, Christian F Beckmann, Timothy E J Behrens, Heidi Johansen-Berg, Peter R Bannister, Marilena De Luca, Ivana Drobnjak, David E Flitney,[...]. Neuroimage 2004
Stephen M Smith, Mark Jenkinson, Mark W Woolrich, Christian F Beckmann, Timothy E J Behrens, Heidi Johansen-Berg, Peter R Bannister, Marilena De Luca, Ivana Drobnjak, David E Flitney,[...]. Neuroimage 2004
17
An improved framework for confound regression and filtering for control of motion artifact in the preprocessing of resting-state functional connectivity data.
Theodore D Satterthwaite, Mark A Elliott, Raphael T Gerraty, Kosha Ruparel, James Loughead, Monica E Calkins, Simon B Eickhoff, Hakon Hakonarson, Ruben C Gur, Raquel E Gur,[...]. Neuroimage 2013
Theodore D Satterthwaite, Mark A Elliott, Raphael T Gerraty, Kosha Ruparel, James Loughead, Monica E Calkins, Simon B Eickhoff, Hakon Hakonarson, Ruben C Gur, Raquel E Gur,[...]. Neuroimage 2013
15
Mindboggling morphometry of human brains.
Arno Klein, Satrajit S Ghosh, Forrest S Bao, Joachim Giard, Yrjö Häme, Eliezer Stavsky, Noah Lee, Brian Rossa, Martin Reuter, Elias Chaibub Neto,[...]. PLoS Comput Biol 2017
Arno Klein, Satrajit S Ghosh, Forrest S Bao, Joachim Giard, Yrjö Häme, Eliezer Stavsky, Noah Lee, Brian Rossa, Martin Reuter, Elias Chaibub Neto,[...]. PLoS Comput Biol 2017
15
The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments.
Krzysztof J Gorgolewski, Tibor Auer, Vince D Calhoun, R Cameron Craddock, Samir Das, Eugene P Duff, Guillaume Flandin, Satrajit S Ghosh, Tristan Glatard, Yaroslav O Halchenko,[...]. Sci Data 2016
Krzysztof J Gorgolewski, Tibor Auer, Vince D Calhoun, R Cameron Craddock, Samir Das, Eugene P Duff, Guillaume Flandin, Satrajit S Ghosh, Tristan Glatard, Yaroslav O Halchenko,[...]. Sci Data 2016
14
The organization of the human cerebral cortex estimated by intrinsic functional connectivity.
B T Thomas Yeo, Fenna M Krienen, Jorge Sepulcre, Mert R Sabuncu, Danial Lashkari, Marisa Hollinshead, Joshua L Roffman, Jordan W Smoller, Lilla Zöllei, Jonathan R Polimeni,[...]. J Neurophysiol 2011
B T Thomas Yeo, Fenna M Krienen, Jorge Sepulcre, Mert R Sabuncu, Danial Lashkari, Marisa Hollinshead, Joshua L Roffman, Jordan W Smoller, Lilla Zöllei, Jonathan R Polimeni,[...]. J Neurophysiol 2011
14
Local-Global Parcellation of the Human Cerebral Cortex from Intrinsic Functional Connectivity MRI.
Alexander Schaefer, Ru Kong, Evan M Gordon, Timothy O Laumann, Xi-Nian Zuo, Avram J Holmes, Simon B Eickhoff, B T Thomas Yeo. Cereb Cortex 2018
Alexander Schaefer, Ru Kong, Evan M Gordon, Timothy O Laumann, Xi-Nian Zuo, Avram J Holmes, Simon B Eickhoff, B T Thomas Yeo. Cereb Cortex 2018
14
MRIQC: Advancing the automatic prediction of image quality in MRI from unseen sites.
Oscar Esteban, Daniel Birman, Marie Schaer, Oluwasanmi O Koyejo, Russell A Poldrack, Krzysztof J Gorgolewski. PLoS One 2017
Oscar Esteban, Daniel Birman, Marie Schaer, Oluwasanmi O Koyejo, Russell A Poldrack, Krzysztof J Gorgolewski. PLoS One 2017
14
A global optimisation method for robust affine registration of brain images.
M Jenkinson, S Smith. Med Image Anal 2001
M Jenkinson, S Smith. Med Image Anal 2001
13
ICA-AROMA: A robust ICA-based strategy for removing motion artifacts from fMRI data.
Raimon H R Pruim, Maarten Mennes, Daan van Rooij, Alberto Llera, Jan K Buitelaar, Christian F Beckmann. Neuroimage 2015
Raimon H R Pruim, Maarten Mennes, Daan van Rooij, Alberto Llera, Jan K Buitelaar, Christian F Beckmann. Neuroimage 2015
13
An automated labeling system for subdividing the human cerebral cortex on MRI scans into gyral based regions of interest.
Rahul S Desikan, Florent Ségonne, Bruce Fischl, Brian T Quinn, Bradford C Dickerson, Deborah Blacker, Randy L Buckner, Anders M Dale, R Paul Maguire, Bradley T Hyman,[...]. Neuroimage 2006
Rahul S Desikan, Florent Ségonne, Bruce Fischl, Brian T Quinn, Bradford C Dickerson, Deborah Blacker, Randy L Buckner, Anders M Dale, R Paul Maguire, Bradley T Hyman,[...]. Neuroimage 2006
12
The minimal preprocessing pipelines for the Human Connectome Project.
Matthew F Glasser, Stamatios N Sotiropoulos, J Anthony Wilson, Timothy S Coalson, Bruce Fischl, Jesper L Andersson, Junqian Xu, Saad Jbabdi, Matthew Webster, Jonathan R Polimeni,[...]. Neuroimage 2013
Matthew F Glasser, Stamatios N Sotiropoulos, J Anthony Wilson, Timothy S Coalson, Bruce Fischl, Jesper L Andersson, Junqian Xu, Saad Jbabdi, Matthew Webster, Jonathan R Polimeni,[...]. Neuroimage 2013
12
12
Temporal autocorrelation in univariate linear modeling of FMRI data.
M W Woolrich, B D Ripley, M Brady, S M Smith. Neuroimage 2001
M W Woolrich, B D Ripley, M Brady, S M Smith. Neuroimage 2001
11
How to correct susceptibility distortions in spin-echo echo-planar images: application to diffusion tensor imaging.
Jesper L R Andersson, Stefan Skare, John Ashburner. Neuroimage 2003
Jesper L R Andersson, Stefan Skare, John Ashburner. Neuroimage 2003
11
Benchmarking of participant-level confound regression strategies for the control of motion artifact in studies of functional connectivity.
Rastko Ciric, Daniel H Wolf, Jonathan D Power, David R Roalf, Graham L Baum, Kosha Ruparel, Russell T Shinohara, Mark A Elliott, Simon B Eickhoff, Christos Davatzikos,[...]. Neuroimage 2017
Rastko Ciric, Daniel H Wolf, Jonathan D Power, David R Roalf, Graham L Baum, Kosha Ruparel, Russell T Shinohara, Mark A Elliott, Simon B Eickhoff, Christos Davatzikos,[...]. Neuroimage 2017
10
An integrated approach to correction for off-resonance effects and subject movement in diffusion MR imaging.
Jesper L R Andersson, Stamatios N Sotiropoulos. Neuroimage 2016
Jesper L R Andersson, Stamatios N Sotiropoulos. Neuroimage 2016
9
The assessment and analysis of handedness: the Edinburgh inventory.
R C Oldfield. Neuropsychologia 1971
R C Oldfield. Neuropsychologia 1971
9
Situating the default-mode network along a principal gradient of macroscale cortical organization.
Daniel S Margulies, Satrajit S Ghosh, Alexandros Goulas, Marcel Falkiewicz, Julia M Huntenburg, Georg Langs, Gleb Bezgin, Simon B Eickhoff, F Xavier Castellanos, Michael Petrides,[...]. Proc Natl Acad Sci U S A 2016
Daniel S Margulies, Satrajit S Ghosh, Alexandros Goulas, Marcel Falkiewicz, Julia M Huntenburg, Georg Langs, Gleb Bezgin, Simon B Eickhoff, F Xavier Castellanos, Michael Petrides,[...]. Proc Natl Acad Sci U S A 2016
8
Toward discovery science of human brain function.
Bharat B Biswal, Maarten Mennes, Xi-Nian Zuo, Suril Gohel, Clare Kelly, Steve M Smith, Christian F Beckmann, Jonathan S Adelstein, Randy L Buckner, Stan Colcombe,[...]. Proc Natl Acad Sci U S A 2010
Bharat B Biswal, Maarten Mennes, Xi-Nian Zuo, Suril Gohel, Clare Kelly, Steve M Smith, Christian F Beckmann, Jonathan S Adelstein, Randy L Buckner, Stan Colcombe,[...]. Proc Natl Acad Sci U S A 2010
8
An evaluation of the efficacy, reliability, and sensitivity of motion correction strategies for resting-state functional MRI.
Linden Parkes, Ben Fulcher, Murat Yücel, Alex Fornito. Neuroimage 2018
Linden Parkes, Ben Fulcher, Murat Yücel, Alex Fornito. Neuroimage 2018
8
Functional connectome fingerprinting: identifying individuals using patterns of brain connectivity.
Emily S Finn, Xilin Shen, Dustin Scheinost, Monica D Rosenberg, Jessica Huang, Marvin M Chun, Xenophon Papademetris, R Todd Constable. Nat Neurosci 2015
Emily S Finn, Xilin Shen, Dustin Scheinost, Monica D Rosenberg, Jessica Huang, Marvin M Chun, Xenophon Papademetris, R Todd Constable. Nat Neurosci 2015
7
Dipy, a library for the analysis of diffusion MRI data.
Eleftherios Garyfallidis, Matthew Brett, Bagrat Amirbekian, Ariel Rokem, Stefan van der Walt, Maxime Descoteaux, Ian Nimmo-Smith. Front Neuroinform 2014
Eleftherios Garyfallidis, Matthew Brett, Bagrat Amirbekian, Ariel Rokem, Stefan van der Walt, Maxime Descoteaux, Ian Nimmo-Smith. Front Neuroinform 2014
7
A multi-modal parcellation of human cerebral cortex.
Matthew F Glasser, Timothy S Coalson, Emma C Robinson, Carl D Hacker, John Harwell, Essa Yacoub, Kamil Ugurbil, Jesper Andersson, Christian F Beckmann, Mark Jenkinson,[...]. Nature 2016
Matthew F Glasser, Timothy S Coalson, Emma C Robinson, Carl D Hacker, John Harwell, Essa Yacoub, Kamil Ugurbil, Jesper Andersson, Christian F Beckmann, Mark Jenkinson,[...]. Nature 2016
7
Cluster failure: Why fMRI inferences for spatial extent have inflated false-positive rates.
Anders Eklund, Thomas E Nichols, Hans Knutsson. Proc Natl Acad Sci U S A 2016
Anders Eklund, Thomas E Nichols, Hans Knutsson. Proc Natl Acad Sci U S A 2016
7
Multiplexed echo planar imaging for sub-second whole brain FMRI and fast diffusion imaging.
David A Feinberg, Steen Moeller, Stephen M Smith, Edward Auerbach, Sudhir Ramanna, Matthias Gunther, Matt F Glasser, Karla L Miller, Kamil Ugurbil, Essa Yacoub. PLoS One 2010
David A Feinberg, Steen Moeller, Stephen M Smith, Edward Auerbach, Sudhir Ramanna, Matthias Gunther, Matt F Glasser, Karla L Miller, Kamil Ugurbil, Essa Yacoub. PLoS One 2010
7
Conn: a functional connectivity toolbox for correlated and anticorrelated brain networks.
Susan Whitfield-Gabrieli, Alfonso Nieto-Castanon. Brain Connect 2012
Susan Whitfield-Gabrieli, Alfonso Nieto-Castanon. Brain Connect 2012
7
The first step for neuroimaging data analysis: DICOM to NIfTI conversion.
Xiangrui Li, Paul S Morgan, John Ashburner, Jolinda Smith, Christopher Rorden. J Neurosci Methods 2016
Xiangrui Li, Paul S Morgan, John Ashburner, Jolinda Smith, Christopher Rorden. J Neurosci Methods 2016
6
Functional connectivity in the motor cortex of resting human brain using echo-planar MRI.
B Biswal, F Z Yetkin, V M Haughton, J S Hyde. Magn Reson Med 1995
B Biswal, F Z Yetkin, V M Haughton, J S Hyde. Magn Reson Med 1995
6
The nuisance of nuisance regression: spectral misspecification in a common approach to resting-state fMRI preprocessing reintroduces noise and obscures functional connectivity.
Michael N Hallquist, Kai Hwang, Beatriz Luna. Neuroimage 2013
Michael N Hallquist, Kai Hwang, Beatriz Luna. Neuroimage 2013
6
A reproducible evaluation of ANTs similarity metric performance in brain image registration.
Brian B Avants, Nicholas J Tustison, Gang Song, Philip A Cook, Arno Klein, James C Gee. Neuroimage 2011
Brian B Avants, Nicholas J Tustison, Gang Song, Philip A Cook, Arno Klein, James C Gee. Neuroimage 2011
6
Correspondence of the brain's functional architecture during activation and rest.
Stephen M Smith, Peter T Fox, Karla L Miller, David C Glahn, P Mickle Fox, Clare E Mackay, Nicola Filippini, Kate E Watkins, Roberto Toro, Angela R Laird,[...]. Proc Natl Acad Sci U S A 2009
Stephen M Smith, Peter T Fox, Karla L Miller, David C Glahn, P Mickle Fox, Clare E Mackay, Nicola Filippini, Kate E Watkins, Roberto Toro, Angela R Laird,[...]. Proc Natl Acad Sci U S A 2009
6
"Mini-mental state". A practical method for grading the cognitive state of patients for the clinician.
M F Folstein, S E Folstein, P R McHugh. J Psychiatr Res 1975
M F Folstein, S E Folstein, P R McHugh. J Psychiatr Res 1975
6
A new SPM toolbox for combining probabilistic cytoarchitectonic maps and functional imaging data.
Simon B Eickhoff, Klaas E Stephan, Hartmut Mohlberg, Christian Grefkes, Gereon R Fink, Katrin Amunts, Karl Zilles. Neuroimage 2005
Simon B Eickhoff, Klaas E Stephan, Hartmut Mohlberg, Christian Grefkes, Gereon R Fink, Katrin Amunts, Karl Zilles. Neuroimage 2005
6
Singularity: Scientific containers for mobility of compute.
Gregory M Kurtzer, Vanessa Sochat, Michael W Bauer. PLoS One 2017
Gregory M Kurtzer, Vanessa Sochat, Michael W Bauer. PLoS One 2017
6
Permutation inference for the general linear model.
Anderson M Winkler, Gerard R Ridgway, Matthew A Webster, Stephen M Smith, Thomas E Nichols. Neuroimage 2014
Anderson M Winkler, Gerard R Ridgway, Matthew A Webster, Stephen M Smith, Thomas E Nichols. Neuroimage 2014
6
Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.