A citation-based method for searching scientific literature

Jinkui Yang, Lei Wang, Xinglai Ji, Yun Feng, Xiaomin Li, Chenggang Zou, Jianping Xu, Yan Ren, Qili Mi, Junli Wu, Shuqun Liu, Yu Liu, Xiaowei Huang, Haiyan Wang, Xuemei Niu, Juan Li, Lianming Liang, Yanlu Luo, Kaifang Ji, Wei Zhou, Zefen Yu, Guohong Li, Yajun Liu, Lei Li, Min Qiao, Lu Feng, Ke-Qin Zhang. PLoS Pathog 2011
Times Cited: 131







List of co-cited articles
753 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Genomic mechanisms accounting for the adaptation to parasitism in nematode-trapping fungi.
Tejashwari Meerupati, Karl-Magnus Andersson, Eva Friman, Dharmendra Kumar, Anders Tunlid, Dag Ahrén. PLoS Genet 2013
62
61

Drechslerella stenobrocha genome illustrates the mechanism of constricting rings and the origin of nematode predation in fungi.
Keke Liu, Weiwei Zhang, Yiling Lai, Meichun Xiang, Xiuna Wang, Xinyu Zhang, Xingzhong Liu. BMC Genomics 2014
42
71

Trapping devices of nematode-trapping fungi: formation, evolution, and genomic perspectives.
Hao Su, Yong Zhao, Jing Zhou, Huihua Feng, Dewei Jiang, Ke-Qin Zhang, Jinkui Yang. Biol Rev Camb Philos Soc 2017
34
76

MAP kinase Slt2 orthologs play similar roles in conidiation, trap formation, and pathogenicity in two nematode-trapping fungi.
Zhengyi Zhen, Xinjing Xing, Meihua Xie, Le Yang, Xuewei Yang, Yaqing Zheng, Yuanli Chen, Ni Ma, Qing Li, Ke-Qin Zhang,[...]. Fungal Genet Biol 2018
33
75

Molecular mechanisms of nematode-nematophagous microbe interactions: basis for biological control of plant-parasitic nematodes.
Juan Li, Chenggang Zou, Jianping Xu, Xinglai Ji, Xuemei Niu, Jinkui Yang, Xiaowei Huang, Ke-Qin Zhang. Annu Rev Phytopathol 2015
79
30


A high-throughput gene knockout procedure for Neurospora reveals functions for multiple transcription factors.
Hildur V Colot, Gyungsoon Park, Gloria E Turner, Carol Ringelberg, Christopher M Crew, Liubov Litvinkova, Richard L Weiss, Katherine A Borkovich, Jay C Dunlap. Proc Natl Acad Sci U S A 2006
808
23

Two Rab GTPases play different roles in conidiation, trap formation, stress resistance, and virulence in the nematode-trapping fungus Arthrobotrys oligospora.
Xuewei Yang, Ni Ma, Le Yang, Yaqing Zheng, Zhengyi Zhen, Qing Li, Meihua Xie, Juan Li, Ke-Qin Zhang, Jinkui Yang. Appl Microbiol Biotechnol 2018
29
79

Transformation of the nematode-trapping fungus Arthrobotrys oligospora.
A Tunlid, J Ahman, R P Oliver. FEMS Microbiol Lett 1999
39
56

Nematode-trapping fungi eavesdrop on nematode pheromones.
Yen-Ping Hsueh, Parag Mahanti, Frank C Schroeder, Paul W Sternberg. Curr Biol 2013
67
28

Origin and evolution of carnivorism in the Ascomycota (fungi).
Ence Yang, Lingling Xu, Ying Yang, Xinyu Zhang, Meichun Xiang, Chengshu Wang, Zhiqiang An, Xingzhong Liu. Proc Natl Acad Sci U S A 2012
42
45


Nematicidal enzymes from microorganisms and their applications.
Jinkui Yang, Lianming Liang, Juan Li, Ke-Qin Zhang. Appl Microbiol Biotechnol 2013
46
36

A proposed adhesin AoMad1 helps nematode-trapping fungus Arthrobotrys oligospora recognizing host signals for life-style switching.
Lianming Liang, Renfei Shen, Yuanyuan Mo, Jinkui Yang, Xinglai Ji, Ke-Qin Zhang. Fungal Genet Biol 2015
19
89

AoStuA, an APSES transcription factor, regulates the conidiation, trap formation, stress resistance and pathogenicity of the nematode-trapping fungus Arthrobotrys oligospora.
Meihua Xie, Yunchuan Wang, Liyan Tang, Le Yang, Duanxu Zhou, Qing Li, Xuemei Niu, Ke-Qin Zhang, Jinkui Yang. Environ Microbiol 2019
21
80

Natural diversity in the predatory behavior facilitates the establishment of a robust model strain for nematode-trapping fungi.
Ching-Ting Yang, Guillermo Vidal-Diez de Ulzurrun, A Pedro Gonçalves, Hung-Che Lin, Ching-Wen Chang, Tsung-Yu Huang, Sheng-An Chen, Cheng-Kuo Lai, Isheng J Tsai, Frank C Schroeder,[...]. Proc Natl Acad Sci U S A 2020
27
62

Bacteria can mobilize nematode-trapping fungi to kill nematodes.
Xin Wang, Guo-Hong Li, Cheng-Gang Zou, Xing-Lai Ji, Tong Liu, Pei-Ji Zhao, Lian-Ming Liang, Jian-Ping Xu, Zhi-Qiang An, Xi Zheng,[...]. Nat Commun 2014
38
42

Malate synthase gene AoMls in the nematode-trapping fungus Arthrobotrys oligospora contributes to conidiation, trap formation, and pathogenicity.
Xinying Zhao, Yunchuan Wang, Yong Zhao, Yan Huang, Ke-Qin Zhang, Jinkui Yang. Appl Microbiol Biotechnol 2014
19
78


Comparison of gene expression in trap cells and vegetative hyphae of the nematophagous fungus Monacrosporium haptotylum.
Dag Ahrén, Margareta Tholander, Csaba Fekete, Balaji Rajashekar, Eva Friman, Tomas Johansson, Anders Tunlid. Microbiology (Reading) 2005
36
38


Arthrobotrisins A-C, oligosporons from the nematode-trapping fungus Arthrobotrys oligospora.
Lu-Xia Wei, Hui-Xiang Zhang, Jian-Lin Tan, Yan-Sheng Chu, Nan Li, Hua-Xi Xue, Yan-Li Wang, Xue-Mei Niu, Ying Zhang, Ke-Qin Zhang. J Nat Prod 2011
21
66

Genome sequencing and comparative transcriptomics of the model entomopathogenic fungi Metarhizium anisopliae and M. acridum.
Qiang Gao, Kai Jin, Sheng-Hua Ying, Yongjun Zhang, Guohua Xiao, Yanfang Shang, Zhibing Duan, Xiao Hu, Xue-Qin Xie, Gang Zhou,[...]. PLoS Genet 2011
387
13

Autophagy is required for trap formation in the nematode-trapping fungus Arthrobotrys oligospora.
Yuan-Li Chen, Ying Gao, Ke-Qin Zhang, Cheng-Gang Zou. Environ Microbiol Rep 2013
20
65

Morphology regulatory metabolites from Arthrobotrys oligospora.
Hui-Xiang Zhang, Jian-Lin Tan, Lu-Xia Wei, Yan-Li Wang, Chuan-Ping Zhang, De-Kai Wu, Chun-Yan Zhu, Ying Zhang, Ke-Qin Zhang, Xue-Mei Niu. J Nat Prod 2012
21
61

Nematode-Trapping Fungi.
Xiangzhi Jiang, Meichun Xiang, Xingzhong Liu. Microbiol Spectr 2017
22
59

Characterization of the Hog1 MAPK pathway in the entomopathogenic fungus Beauveria bassiana.
Jing Liu, Zhi-Kang Wang, Huan-Huan Sun, Sheng-Hua Ying, Ming-Guang Feng. Environ Microbiol 2017
49
26

Characterization and functional analysis of calcium/calmodulin-dependent protein kinases (CaMKs) in the nematode-trapping fungus Arthrobotrys oligospora.
Zhengyi Zhen, Guosheng Zhang, Le Yang, Ni Ma, Qing Li, Yuxin Ma, Xuemei Niu, Ke-Qin Zhang, Jinkui Yang. Appl Microbiol Biotechnol 2019
17
76

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.
Sudhir Kumar, Glen Stecher, Koichiro Tamura. Mol Biol Evol 2016
13

The Velvet Proteins VosA and VelB Play Different Roles in Conidiation, Trap Formation, and Pathogenicity in the Nematode-Trapping Fungus Arthrobotrys oligospora.
Guosheng Zhang, Yaqing Zheng, Yuxin Ma, Le Yang, Meihua Xie, Duanxu Zhou, Xuemei Niu, Ke-Qin Zhang, Jinkui Yang. Front Microbiol 2019
15
86

Protein Kinase Ime2 Is Required for Mycelial Growth, Conidiation, Osmoregulation, and Pathogenicity in Nematode-Trapping Fungus Arthrobotrys oligospora.
Meihua Xie, Na Bai, Jiangliu Yang, Kexin Jiang, Duanxu Zhou, Yining Zhao, Dongni Li, Xuemei Niu, Ke-Qin Zhang, Jinkui Yang. Front Microbiol 2020
17
76

Proteomic and transcriptional analyses of Arthrobotrys oligospora cell wall related proteins reveal complexity of fungal virulence against nematodes.
Lianming Liang, Heng Wu, Zhiheng Liu, Renfei Shen, Hong Gao, Jinkui Yang, Keqin Zhang. Appl Microbiol Biotechnol 2013
17
70

Extracellular enzymes and the pathogenesis of nematophagous fungi.
Jinkui Yang, Baoyu Tian, Lianming Liang, Ke-Qin Zhang. Appl Microbiol Biotechnol 2007
68
17


The Arf-GAP AoGlo3 regulates conidiation, endocytosis, and pathogenicity in the nematode-trapping fungus Arthrobotrys oligospora.
Yuxin Ma, Xuewei Yang, Meihua Xie, Guosheng Zhang, Le Yang, Na Bai, Yining Zhao, Dongni Li, Ke-Qin Zhang, Jinkui Yang. Fungal Genet Biol 2020
16
75

Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita.
Pierre Abad, Jérôme Gouzy, Jean-Marc Aury, Philippe Castagnone-Sereno, Etienne G J Danchin, Emeline Deleury, Laetitia Perfus-Barbeoch, Véronique Anthouard, François Artiguenave, Vivian C Blok,[...]. Nat Biotechnol 2008
567
11

Comparative genomics and transcriptomics analyses reveal divergent lifestyle features of nematode endoparasitic fungus Hirsutella minnesotensis.
Yiling Lai, Keke Liu, Xinyu Zhang, Xiaoling Zhang, Kuan Li, Niuniu Wang, Chi Shu, Yunpeng Wu, Chengshu Wang, Kathryn E Bushley,[...]. Genome Biol Evol 2014
32
34


High-throughput production of gene replacement mutants in Neurospora crassa.
Gyungsoon Park, Hildur V Colot, Patrick D Collopy, Svetlana Krystofova, Christopher Crew, Carol Ringelberg, Liubov Litvinkova, Lorena Altamirano, Liande Li, Susan Curilla,[...]. Methods Mol Biol 2011
36
30

Genomic perspectives on the evolution of fungal entomopathogenicity in Beauveria bassiana.
Guohua Xiao, Sheng-Hua Ying, Peng Zheng, Zheng-Liang Wang, Siwei Zhang, Xue-Qin Xie, Yanfang Shang, Raymond J St Leger, Guo-Ping Zhao, Chengshu Wang,[...]. Sci Rep 2012
355
10

Surface polymers of the nematode-trapping fungus Arthrobotrys oligospora.
A Tunlid, T Johansson, B Nordbring-Hertz. J Gen Microbiol 1991
26
38

Sequencing and functional analysis of the genome of a nematode egg-parasitic fungus, Pochonia chlamydosporia.
Eduardo Larriba, María D L A Jaime, José Carbonell-Caballero, Ana Conesa, Joaquín Dopazo, Corey Nislow, José Martín-Nieto, Luis Vicente Lopez-Llorca. Fungal Genet Biol 2014
56
17

Multifunctional yeast high-copy-number shuttle vectors.
T W Christianson, R S Sikorski, M Dante, J H Shero, P Hieter. Gene 1992
10

The nitrate assimilation pathway is involved in the trap formation of Arthrobotrys oligospora, a nematode-trapping fungus.
Lianming Liang, Zhiheng Liu, Lu Liu, Jinzhou Li, Hong Gao, Jinkui Yang, Ke-Qin Zhang. Fungal Genet Biol 2016
12
83

Characterization and functional analyses of the chitinase-encoding genes in the nematode-trapping fungus Arthrobotrys oligospora.
Jinkui Yang, Yan Yu, Juan Li, Wei Zhu, Zongyi Geng, Dewei Jiang, Yunchuan Wang, Ke-Qin Zhang. Arch Microbiol 2013
16
62

Nematophagous fungus Arthrobotrys oligospora mimics olfactory cues of sex and food to lure its nematode prey.
Yen-Ping Hsueh, Matthew R Gronquist, Erich M Schwarz, Ravi David Nath, Ching-Han Lee, Shalha Gharib, Frank C Schroeder, Paul W Sternberg. Elife 2017
33
30

Phylogenetics and evolution of nematode-trapping fungi (Orbiliales) estimated from nuclear and protein coding genes.
Yan Li, Kevin D Hyde, Rajesh Jeewon, Lei Cai, Dhanasekaran Vijaykrishna, Keqin Zhang. Mycologia 2005
41
21


The genome sequence of the filamentous fungus Neurospora crassa.
James E Galagan, Sarah E Calvo, Katherine A Borkovich, Eric U Selker, Nick D Read, David Jaffe, William FitzHugh, Li-Jun Ma, Serge Smirnov, Seth Purcell,[...]. Nature 2003
9

Interspecific and host-related gene expression patterns in nematode-trapping fungi.
Karl-Magnus Andersson, Dharmendra Kumar, Johan Bentzer, Eva Friman, Dag Ahrén, Anders Tunlid. BMC Genomics 2014
16
56


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.