A citation-based method for searching scientific literature

Manuel A Rivas, Mélissa Beaudoin, Agnes Gardet, Christine Stevens, Yashoda Sharma, Clarence K Zhang, Gabrielle Boucher, Stephan Ripke, David Ellinghaus, Noel Burtt, Tim Fennell, Andrew Kirby, Anna Latiano, Philippe Goyette, Todd Green, Jonas Halfvarson, Talin Haritunians, Joshua M Korn, Finny Kuruvilla, Caroline Lagacé, Benjamin Neale, Ken Sin Lo, Phil Schumm, Leif Törkvist, Marla C Dubinsky, Steven R Brant, Mark S Silverberg, Richard H Duerr, David Altshuler, Stacey Gabriel, Guillaume Lettre, Andre Franke, Mauro D'Amato, Dermot P B McGovern, Judy H Cho, John D Rioux, Ramnik J Xavier, Mark J Daly. Nat Genet 2011
Times Cited: 535







List of co-cited articles
762 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.
Luke Jostins, Stephan Ripke, Rinse K Weersma, Richard H Duerr, Dermot P McGovern, Ken Y Hui, James C Lee, L Philip Schumm, Yashoda Sharma, Carl A Anderson,[...]. Nature 2012
28

Deep resequencing of GWAS loci identifies rare variants in CARD9, IL23R and RNF186 that are associated with ulcerative colitis.
Mélissa Beaudoin, Philippe Goyette, Gabrielle Boucher, Ken Sin Lo, Manuel A Rivas, Christine Stevens, Azadeh Alikashani, Martin Ladouceur, David Ellinghaus, Leif Törkvist,[...]. PLoS Genet 2013
141
20

Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Jimmy Z Liu, Suzanne van Sommeren, Hailiang Huang, Siew C Ng, Rudi Alberts, Atsushi Takahashi, Stephan Ripke, James C Lee, Luke Jostins, Tejas Shah,[...]. Nat Genet 2015
18

Ubiquitin Ligase TRIM62 Regulates CARD9-Mediated Anti-fungal Immunity and Intestinal Inflammation.
Zhifang Cao, Kara L Conway, Robert J Heath, Jason S Rush, Elizaveta S Leshchiner, Zaida G Ramirez-Ortiz, Natalia B Nedelsky, Hailiang Huang, Aylwin Ng, Agnès Gardet,[...]. Immunity 2015
80
21

CARD9 impacts colitis by altering gut microbiota metabolism of tryptophan into aryl hydrocarbon receptor ligands.
Bruno Lamas, Mathias L Richard, Valentin Leducq, Hang-Phuong Pham, Marie-Laure Michel, Gregory Da Costa, Chantal Bridonneau, Sarah Jegou, Thomas W Hoffmann, Jane M Natividad,[...]. Nat Med 2016
654
16

Association of NOD2 leucine-rich repeat variants with susceptibility to Crohn's disease.
J P Hugot, M Chamaillard, H Zouali, S Lesage, J P Cézard, J Belaiche, S Almer, C Tysk, C A O'Morain, M Gassull,[...]. Nature 2001
16

Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.
Andre Franke, Dermot P B McGovern, Jeffrey C Barrett, Kai Wang, Graham L Radford-Smith, Tariq Ahmad, Charlie W Lees, Tobias Balschun, James Lee, Rebecca Roberts,[...]. Nat Genet 2010
15

Fine-mapping inflammatory bowel disease loci to single-variant resolution.
Hailiang Huang, Ming Fang, Luke Jostins, Maša Umićević Mirkov, Gabrielle Boucher, Carl A Anderson, Vibeke Andersen, Isabelle Cleynen, Adrian Cortes, François Crins,[...]. Nature 2017
264
15

A frameshift mutation in NOD2 associated with susceptibility to Crohn's disease.
Y Ogura, D K Bonen, N Inohara, D L Nicolae, F F Chen, R Ramos, H Britton, T Moran, R Karaliuskas, R H Duerr,[...]. Nature 2001
15

A homozygous CARD9 mutation in a family with susceptibility to fungal infections.
Erik-Oliver Glocker, Andre Hennigs, Mohammad Nabavi, Alejandro A Schäffer, Cristina Woellner, Ulrich Salzer, Dietmar Pfeifer, Hendrik Veelken, Klaus Warnatz, Fariba Tahami,[...]. N Engl J Med 2009
541
11

A genome-wide association study identifies IL23R as an inflammatory bowel disease gene.
Richard H Duerr, Kent D Taylor, Steven R Brant, John D Rioux, Mark S Silverberg, Mark J Daly, A Hillary Steinhart, Clara Abraham, Miguel Regueiro, Anne Griffiths,[...]. Science 2006
11

Fungal microbiota dysbiosis in IBD.
Harry Sokol, Valentin Leducq, Hugues Aschard, Hang-Phuong Pham, Sarah Jegou, Cecilia Landman, David Cohen, Giuseppina Liguori, Anne Bourrier, Isabelle Nion-Larmurier,[...]. Gut 2017
548
10

Finding the missing heritability of complex diseases.
Teri A Manolio, Francis S Collins, Nancy J Cox, David B Goldstein, Lucia A Hindorff, David J Hunter, Mark I McCarthy, Erin M Ramos, Lon R Cardon, Aravinda Chakravarti,[...]. Nature 2009
10

Card9 mediates intestinal epithelial cell restitution, T-helper 17 responses, and control of bacterial infection in mice.
Harry Sokol, Kara L Conway, Mei Zhang, Myunghwan Choi, Bret Morin, Zhifang Cao, Eduardo J Villablanca, Chun Li, Cisca Wijmenga, Seok Hyun Yun,[...]. Gastroenterology 2013
102
9

Interactions between commensal fungi and the C-type lectin receptor Dectin-1 influence colitis.
Iliyan D Iliev, Vincent A Funari, Kent D Taylor, Quoclinh Nguyen, Christopher N Reyes, Samuel P Strom, Jordan Brown, Courtney A Becker, Phillip R Fleshner, Marla Dubinsky,[...]. Science 2012
646
9

CARD9S12N facilitates the production of IL-5 by alveolar macrophages for the induction of type 2 immune responses.
Xia Xu, Jin-Fu Xu, Guoxing Zheng, Hai-Wen Lu, Jie-Lin Duan, Wei Rui, Jian-Hong Guan, Li-Qing Cheng, Dan-Dan Yang, Ming-Chao Wang,[...]. Nat Immunol 2018
36
25

The adaptor protein CARD9 is required for innate immune responses to intracellular pathogens.
Yen-Michael S Hsu, Yongliang Zhang, Yun You, Donghai Wang, Hongxiu Li, Omar Duramad, Xiao-Feng Qin, Chen Dong, Xin Lin. Nat Immunol 2007
322
9

Genetic analysis of innate immunity in Crohn's disease and ulcerative colitis identifies two susceptibility loci harboring CARD9 and IL18RAP.
Alexandra Zhernakova, Eleanora M Festen, Lude Franke, Gosia Trynka, Cleo C van Diemen, Alienke J Monsuur, Marianna Bevova, Rian M Nijmeijer, Ruben van 't Slot, Roel Heijmans,[...]. Am J Hum Genet 2008
196
9

Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.
Katrina M de Lange, Loukas Moutsianas, James C Lee, Christopher A Lamb, Yang Luo, Nicholas A Kennedy, Luke Jostins, Daniel L Rice, Javier Gutierrez-Achury, Sun-Gou Ji,[...]. Nat Genet 2017
479
9

Genome-wide association study identifies new susceptibility loci for Crohn disease and implicates autophagy in disease pathogenesis.
John D Rioux, Ramnik J Xavier, Kent D Taylor, Mark S Silverberg, Philippe Goyette, Alan Huett, Todd Green, Petric Kuballa, M Michael Barmada, Lisa Wu Datta,[...]. Nat Genet 2007
9

CARD9-Dependent Neutrophil Recruitment Protects against Fungal Invasion of the Central Nervous System.
Rebecca A Drummond, Amanda L Collar, Muthulekha Swamydas, Carlos A Rodriguez, Jean K Lim, Laura M Mendez, Danielle L Fink, Amy P Hsu, Bing Zhai, Hatice Karauzum,[...]. PLoS Pathog 2015
125
8

A genome-wide association scan of nonsynonymous SNPs identifies a susceptibility variant for Crohn disease in ATG16L1.
Jochen Hampe, Andre Franke, Philip Rosenstiel, Andreas Till, Markus Teuber, Klaus Huse, Mario Albrecht, Gabriele Mayr, Francisco M De La Vega, Jason Briggs,[...]. Nat Genet 2007
8


Malassezia Is Associated with Crohn's Disease and Exacerbates Colitis in Mouse Models.
Jose J Limon, Jie Tang, Dalin Li, Andrea J Wolf, Kathrin S Michelsen, Vince Funari, Matthew Gargus, Christopher Nguyen, Purnima Sharma, Viviana I Maymi,[...]. Cell Host Microbe 2019
144
8

Rare variants of IFIH1, a gene implicated in antiviral responses, protect against type 1 diabetes.
Sergey Nejentsev, Neil Walker, David Riches, Michael Egholm, John A Todd. Science 2009
701
8

Rare-variant association analysis: study designs and statistical tests.
Seunggeung Lee, Gonçalo R Abecasis, Michael Boehnke, Xihong Lin. Am J Hum Genet 2014
552
8

Mechanistic Insights into the Role of C-Type Lectin Receptor/CARD9 Signaling in Human Antifungal Immunity.
Rebecca A Drummond, Michail S Lionakis. Front Cell Infect Microbiol 2016
77
9

Deep dermatophytosis and inherited CARD9 deficiency.
Fanny Lanternier, Saad Pathan, Quentin B Vincent, Luyan Liu, Sophie Cypowyj, Carolina Prando, Mélanie Migaud, Lynda Taibi, Aomar Ammar-Khodja, Omar Boudghene Stambouli,[...]. N Engl J Med 2013
220
7

Inherited CARD9 deficiency in otherwise healthy children and adults with Candida species-induced meningoencephalitis, colitis, or both.
Fanny Lanternier, Seyed Alireza Mahdaviani, Elisa Barbati, Hélène Chaussade, Yatrika Koumar, Romain Levy, Blandine Denis, Anne-Sophie Brunel, Sophie Martin, Michèle Loop,[...]. J Allergy Clin Immunol 2015
121
7

CX3CR1+ mononuclear phagocytes control immunity to intestinal fungi.
Irina Leonardi, Xin Li, Alexa Semon, Dalin Li, Itai Doron, Gregory Putzel, Agnieszka Bar, Daniel Prieto, Maria Rescigno, Dermot P B McGovern,[...]. Science 2018
145
7

Card9 controls a non-TLR signalling pathway for innate anti-fungal immunity.
Olaf Gross, Andreas Gewies, Katrin Finger, Martin Schäfer, Tim Sparwasser, Christian Peschel, Irmgard Förster, Jürgen Ruland. Nature 2006
620
7

Small-molecule inhibitors directly target CARD9 and mimic its protective variant in inflammatory bowel disease.
Elizaveta S Leshchiner, Jason S Rush, Michael A Durney, Zhifang Cao, Vlado Dančík, Benjamin Chittick, Huixian Wu, Adam Petrone, Joshua A Bittker, Andrew Phillips,[...]. Proc Natl Acad Sci U S A 2017
30
23

Interaction between ERAP1 and HLA-B27 in ankylosing spondylitis implicates peptide handling in the mechanism for HLA-B27 in disease susceptibility.
David M Evans, Chris C A Spencer, Jennifer J Pointon, Zhan Su, David Harvey, Grazyna Kochan, Udo Oppermann, Alexander Dilthey, Matti Pirinen, Millicent A Stone,[...]. Nat Genet 2011
614
7

Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.
Krzysztof Kiryluk, Yifu Li, Francesco Scolari, Simone Sanna-Cherchi, Murim Choi, Miguel Verbitsky, David Fasel, Sneh Lata, Sindhuri Prakash, Samantha Shapiro,[...]. Nat Genet 2014
325
7


Genetics and pathogenesis of inflammatory bowel disease.
Bernard Khor, Agnès Gardet, Ramnik J Xavier. Nature 2011
7

Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.
David Ellinghaus, Luke Jostins, Sarah L Spain, Adrian Cortes, Jörn Bethune, Buhm Han, Yu Rang Park, Soumya Raychaudhuri, Jennie G Pouget, Matthias Hübenthal,[...]. Nat Genet 2016
380
7

C1orf106 is a colitis risk gene that regulates stability of epithelial adherens junctions.
Vishnu Mohanan, Toru Nakata, A Nicole Desch, Chloé Lévesque, Angela Boroughs, Gaelen Guzman, Zhifang Cao, Elizabeth Creasey, Junmei Yao, Gabrielle Boucher,[...]. Science 2018
63
11

Resequencing of positional candidates identifies low frequency IL23R coding variants protecting against inflammatory bowel disease.
Yukihide Momozawa, Myriam Mni, Kayo Nakamura, Wouter Coppieters, Sven Almer, Leila Amininejad, Isabelle Cleynen, Jean-Frédéric Colombel, Peter de Rijk, Olivier Dewit,[...]. Nat Genet 2011
147
7

Exploring the genetic architecture of inflammatory bowel disease by whole-genome sequencing identifies association at ADCY7.
Yang Luo, Katrina M de Lange, Luke Jostins, Loukas Moutsianas, Joshua Randall, Nicholas A Kennedy, Christopher A Lamb, Shane McCarthy, Tariq Ahmad, Cathryn Edwards,[...]. Nat Genet 2017
93
7

Fungal Signature in the Gut Microbiota of Pediatric Patients With Inflammatory Bowel Disease.
Christel Chehoud, Lindsey G Albenberg, Colleen Judge, Christian Hoffmann, Stephanie Grunberg, Kyle Bittinger, Robert N Baldassano, James D Lewis, Frederic D Bushman, Gary D Wu. Inflamm Bowel Dis 2015
141
6

Tryptophan catabolites from microbiota engage aryl hydrocarbon receptor and balance mucosal reactivity via interleukin-22.
Teresa Zelante, Rossana G Iannitti, Cristina Cunha, Antonella De Luca, Gloria Giovannini, Giuseppe Pieraccini, Riccardo Zecchi, Carmen D'Angelo, Cristina Massi-Benedetti, Francesca Fallarino,[...]. Immunity 2013
6

Genome-wide association identifies multiple ulcerative colitis susceptibility loci.
Dermot P B McGovern, Agnès Gardet, Leif Törkvist, Philippe Goyette, Jonah Essers, Kent D Taylor, Benjamin M Neale, Rick T H Ong, Caroline Lagacé, Chun Li,[...]. Nat Genet 2010
472
6

Induction of intestinal Th17 cells by segmented filamentous bacteria.
Ivaylo I Ivanov, Koji Atarashi, Nicolas Manel, Eoin L Brodie, Tatsuichiro Shima, Ulas Karaoz, Dongguang Wei, Katherine C Goldfarb, Clark A Santee, Susan V Lynch,[...]. Cell 2009
6

Deletion polymorphism upstream of IRGM associated with altered IRGM expression and Crohn's disease.
Steven A McCarroll, Alan Huett, Petric Kuballa, Shannon D Chilewski, Aimee Landry, Philippe Goyette, Michael C Zody, Jennifer L Hall, Steven R Brant, Judy H Cho,[...]. Nat Genet 2008
496
6

Three ulcerative colitis susceptibility loci are associated with primary sclerosing cholangitis and indicate a role for IL2, REL, and CARD9.
Marcel Janse, Laetitia E Lamberts, Lude Franke, Soumya Raychaudhuri, Eva Ellinghaus, Kirsten Muri Boberg, Espen Melum, Trine Folseraas, Erik Schrumpf, Annika Bergquist,[...]. Hepatology 2011
90
6

Syk- and CARD9-dependent coupling of innate immunity to the induction of T helper cells that produce interleukin 17.
Salomé LeibundGut-Landmann, Olaf Gross, Matthew J Robinson, Fabiola Osorio, Emma C Slack, S Vicky Tsoni, Edina Schweighoffer, Victor Tybulewicz, Gordon D Brown, Jürgen Ruland,[...]. Nat Immunol 2007
870
6

IBD risk loci are enriched in multigenic regulatory modules encompassing putative causative genes.
Yukihide Momozawa, Julia Dmitrieva, Emilie Théâtre, Valérie Deffontaine, Souad Rahmouni, Benoît Charloteaux, François Crins, Elisa Docampo, Mahmoud Elansary, Ann-Stephan Gori,[...]. Nat Commun 2018
93
6


The support of human genetic evidence for approved drug indications.
Matthew R Nelson, Hannah Tipney, Jeffery L Painter, Judong Shen, Paola Nicoletti, Yufeng Shen, Aris Floratos, Pak Chung Sham, Mulin Jun Li, Junwen Wang,[...]. Nat Genet 2015
641
6


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.