A citation-based method for searching scientific literature

Megan L Porter, Joseph R Blasic, Michael J Bok, Evan G Cameron, Thomas Pringle, Thomas W Cronin, Phyllis R Robinson. Proc Biol Sci 2012
Times Cited: 159







List of co-cited articles
1073 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The opsins.
Akihisa Terakita. Genome Biol 2005
323
34

The Last Common Ancestor of Most Bilaterian Animals Possessed at Least Nine Opsins.
M Desmond Ramirez, Autum N Pairett, M Sabrina Pankey, Jeanne M Serb, Daniel I Speiser, Andrew J Swafford, Todd H Oakley. Genome Biol Evol 2016
61
47

Evolution of opsins and phototransduction.
Yoshinori Shichida, Take Matsuyama. Philos Trans R Soc Lond B Biol Sci 2009
212
24

Metazoan opsin evolution reveals a simple route to animal vision.
Roberto Feuda, Sinead C Hamilton, James O McInerney, Davide Pisani. Proc Natl Acad Sci U S A 2012
104
22

Full-length transcriptome assembly from RNA-Seq data without a reference genome.
Manfred G Grabherr, Brian J Haas, Moran Yassour, Joshua Z Levin, Dawn A Thompson, Ido Amit, Xian Adiconis, Lin Fan, Raktima Raychowdhury, Qiandong Zeng,[...]. Nat Biotechnol 2011
18

The Dynamic Evolutionary History of Pancrustacean Eyes and Opsins.
Miriam J Henze, Todd H Oakley. Integr Comp Biol 2015
52
30


Melanopsin: An opsin in melanophores, brain, and eye.
I Provencio, G Jiang, W J De Grip, W P Hayes, M D Rollag. Proc Natl Acad Sci U S A 1998
603
15

Extraordinary diversity of visual opsin genes in dragonflies.
Ryo Futahashi, Ryouka Kawahara-Miki, Michiyo Kinoshita, Kazutoshi Yoshitake, Shunsuke Yajima, Kentaro Arikawa, Takema Fukatsu. Proc Natl Acad Sci U S A 2015
87
16


Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms.
Daniel I Speiser, M Sabrina Pankey, Alexander K Zaharoff, Barbara A Battelle, Heather D Bracken-Grissom, Jesse W Breinholt, Seth M Bybee, Thomas W Cronin, Anders Garm, Annie R Lindgren,[...]. BMC Bioinformatics 2014
42
33

The evolution of color vision in insects.
A D Briscoe, L Chittka. Annu Rev Entomol 2001
566
13

Ciliary photoreceptors with a vertebrate-type opsin in an invertebrate brain.
Detlev Arendt, Kristin Tessmar-Raible, Heidi Snyman, Adriaan W Dorresteijn, Joachim Wittbrodt. Science 2004
236
13


The evolution of irradiance detection: melanopsin and the non-visual opsins.
Stuart N Peirson, Stephanie Halford, Russell G Foster. Philos Trans R Soc Lond B Biol Sci 2009
137
13

Crystal structure of rhodopsin: A G protein-coupled receptor.
K Palczewski, T Kumasaka, T Hori, C A Behnke, H Motoshima, B A Fox, I Le Trong, D C Teller, T Okada, R E Stenkamp,[...]. Science 2000
12

An extended family of novel vertebrate photopigments is widely expressed and displays a diversity of function.
Wayne I L Davies, T Katherine Tamai, Lei Zheng, Josephine K Fu, Jason Rihel, Russell G Foster, David Whitmore, Mark W Hankins. Genome Res 2015
73
16

Molecular characterization of crustacean visual pigments and the evolution of pancrustacean opsins.
Megan L Porter, Thomas W Cronin, David A McClellan, Keith A Crandall. Mol Biol Evol 2007
54
20

Cubozoan genome illuminates functional diversification of opsins and photoreceptor evolution.
Michaela Liegertová, Jiří Pergner, Iryna Kozmiková, Peter Fabian, Antonio R Pombinho, Hynek Strnad, Jan Pačes, Čestmír Vlček, Petr Bartůněk, Zbyněk Kozmik. Sci Rep 2015
22
50

Conservation, Duplication, and Divergence of Five Opsin Genes in Insect Evolution.
Roberto Feuda, Ferdinand Marlétaz, Michael A Bentley, Peter W H Holland. Genome Biol Evol 2016
35
31

Eye evolution and its functional basis.
Dan-E Nilsson. Vis Neurosci 2013
93
11

Trimmomatic: a flexible trimmer for Illumina sequence data.
Anthony M Bolger, Marc Lohse, Bjoern Usadel. Bioinformatics 2014
11


The origins of novel protein interactions during animal opsin evolution.
David C Plachetzki, Bernard M Degnan, Todd H Oakley. PLoS One 2007
75
14



The comb jelly opsins and the origins of animal phototransduction.
Roberto Feuda, Omar Rota-Stabelli, Todd H Oakley, Davide Pisani. Genome Biol Evol 2014
37
27

Evolution of eyes and photoreceptor cell types.
Detlev Arendt. Int J Dev Biol 2003
223
10

Characterisation and localisation of the opsin protein repertoire in the brain and retinas of a spider and an onychophoran.
Bo Joakim Eriksson, David Fredman, Gerhard Steiner, Axel Schmid. BMC Evol Biol 2013
34
29

UV-sensitive photoreceptor protein OPN5 in humans and mice.
Daisuke Kojima, Suguru Mori, Masaki Torii, Akimori Wada, Rika Morishita, Yoshitaka Fukada. PLoS One 2011
101
10

Whole-Genome Comparative Analysis of Two Carbapenem-Resistant ST-258 Klebsiella pneumoniae Strains Isolated during a North-Eastern Ohio Outbreak: Differences within the High Heterogeneity Zones.
María Soledad Ramirez, Gang Xie, German M Traglia, Shannon L Johnson, Karen W Davenport, David van Duin, Azam Ramazani, Federico Perez, Michael R Jacobs, David J Sherratt,[...]. Genome Biol Evol 2016
20
50

Identification and characterization of a protostome homologue of peropsin from a jumping spider.
Takashi Nagata, Mitsumasa Koyanagi, Hisao Tsukamoto, Akihisa Terakita. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2010
32
28

IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.
Lam-Tung Nguyen, Heiko A Schmidt, Arndt von Haeseler, Bui Quang Minh. Mol Biol Evol 2015
9

Crystal structure of squid rhodopsin.
Midori Murakami, Tsutomu Kouyama. Nature 2008
366
9

Homologs of vertebrate Opn3 potentially serve as a light sensor in nonphotoreceptive tissue.
Mitsumasa Koyanagi, Eiichiro Takada, Takashi Nagata, Hisao Tsukamoto, Akihisa Terakita. Proc Natl Acad Sci U S A 2013
84
10

Evolution and functional diversity of jellyfish opsins.
Hiroshi Suga, Volker Schmid, Walter J Gehring. Curr Biol 2008
83
10

Visual phototransduction components in cephalopod chromatophores suggest dermal photoreception.
Alexandra C N Kingston, Alan M Kuzirian, Roger T Hanlon, Thomas W Cronin. J Exp Biol 2015
36
25

The evolution of eyes and visually guided behaviour.
Dan-Eric Nilsson. Philos Trans R Soc Lond B Biol Sci 2009
101
9

Parietal-eye phototransduction components and their potential evolutionary implications.
Chih-Ying Su, Dong-Gen Luo, Akihisa Terakita, Yoshinori Shichida, Hsi-Wen Liao, Manija A Kazmi, Thomas P Sakmar, King-Wai Yau. Science 2006
75
12


Diversity of animal opsin-based pigments and their optogenetic potential.
Mitsumasa Koyanagi, Akihisa Terakita. Biochim Biophys Acta 2014
65
13

Opsin transcripts of predatory diving beetles: a comparison of surface and subterranean photic niches.
Simon M Tierney, Steven J B Cooper, Kathleen M Saint, Terry Bertozzi, Josephine Hyde, William F Humphreys, Andrew D Austin. R Soc Open Sci 2015
21
38

BLAST+: architecture and applications.
Christiam Camacho, George Coulouris, Vahram Avagyan, Ning Ma, Jason Papadopoulos, Kevin Bealer, Thomas L Madden. BMC Bioinformatics 2009
8

Opsin co-expression in Limulus photoreceptors: differential regulation by light and a circadian clock.
C Katti, K Kempler, M L Porter, A Legg, R Gonzalez, E Garcia-Rivera, D Dugger, B-A Battelle. J Exp Biol 2010
32
25

A cure for the blues: opsin duplication and subfunctionalization for short-wavelength sensitivity in jewel beetles (Coleoptera: Buprestidae).
Nathan P Lord, Rebecca L Plimpton, Camilla R Sharkey, Anton Suvorov, Jonathan P Lelito, Barry M Willardson, Seth M Bybee. BMC Evol Biol 2016
22
36

A novel human opsin in the inner retina.
I Provencio, I R Rodriguez, G Jiang, W P Hayes, E F Moreira, M D Rollag. J Neurosci 2000
684
8

Cephalochordate melanopsin: evolutionary linkage between invertebrate visual cells and vertebrate photosensitive retinal ganglion cells.
Mitsumasa Koyanagi, Kaoru Kubokawa, Hisao Tsukamoto, Yoshinori Shichida, Akihisa Terakita. Curr Biol 2005
159
8

Opn5 is a UV-sensitive bistable pigment that couples with Gi subtype of G protein.
Takahiro Yamashita, Hideyo Ohuchi, Sayuri Tomonari, Keiko Ikeda, Kazumi Sakai, Yoshinori Shichida. Proc Natl Acad Sci U S A 2010
113
8

Pinopsin is a chicken pineal photoreceptive molecule.
T Okano, T Yoshizawa, Y Fukada. Nature 1994
258
8

Phototransduction motifs and variations.
King-Wai Yau, Roger C Hardie. Cell 2009
249
8


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.