A citation-based method for searching scientific literature

Michael L Pendrak, David D Roberts. RNA 2011
Times Cited: 13







List of co-cited articles
34 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Ribosome biogenesis in the yeast Saccharomyces cerevisiae.
John L Woolford, Susan J Baserga. Genetics 2013
431
30

Ribosome synthesis in Saccharomyces cerevisiae.
J Venema, D Tollervey. Annu Rev Genet 1999
618
30

The economics of ribosome biosynthesis in yeast.
J R Warner. Trends Biochem Sci 1999
23

Mapping the cleavage sites on mammalian pre-rRNAs: where do we stand?
Sahra-Taylor Mullineux, Denis L J Lafontaine. Biochimie 2012
129
23

Pre-18S ribosomal RNA is structurally compacted into the SSU processome prior to being cleaved from nascent transcripts in Saccharomyces cerevisiae.
Yvonne N Osheim, Sarah L French, Kristin M Keck, Erica A Champion, Krasimir Spasov, François Dragon, Susan J Baserga, Ann L Beyer. Mol Cell 2004
194
23

The RNA helicase Mtr4p modulates polyadenylation in the TRAMP complex.
Huijue Jia, Xuying Wang, Fei Liu, Ulf-Peter Guenther, Sukanya Srinivasan, James T Anderson, Eckhard Jankowsky. Cell 2011
70
15

The 5' external transcribed spacer in mouse ribosomal RNA contains two cleavage sites.
Tatyana Kent, Yevgeniya R Lapik, Dimitri G Pestov. RNA 2009
33
15

RNA degradation by the exosome is promoted by a nuclear polyadenylation complex.
John LaCava, Jonathan Houseley, Cosmin Saveanu, Elisabeth Petfalski, Elizabeth Thompson, Alain Jacquier, David Tollervey. Cell 2005
669
15

90S pre-ribosomes include the 35S pre-rRNA, the U3 snoRNP, and 40S subunit processing factors but predominantly lack 60S synthesis factors.
Paola Grandi, Vladimir Rybin, Jochen Bassler, Elisabeth Petfalski, Daniela Strauss, Martina Marzioch, Thorsten Schäfer, Bernhard Kuster, Herbert Tschochner, David Tollervey,[...]. Mol Cell 2002
367
15

MODOMICS: a database of RNA modification pathways--2013 update.
Magdalena A Machnicka, Kaja Milanowska, Okan Osman Oglou, Elzbieta Purta, Malgorzata Kurkowska, Anna Olchowik, Witold Januszewski, Sebastian Kalinowski, Stanislaw Dunin-Horkawicz, Kristian M Rother,[...]. Nucleic Acids Res 2013
686
15

Powering through ribosome assembly.
Bethany S Strunk, Katrin Karbstein. RNA 2009
141
15

Both endonucleolytic and exonucleolytic cleavage mediate ITS1 removal during human ribosomal RNA processing.
Katherine E Sloan, Sandy Mattijssen, Simon Lebaron, David Tollervey, Ger J M Pruijn, Nicholas J Watkins. J Cell Biol 2013
90
15

The 5' end of yeast 5.8S rRNA is generated by exonucleases from an upstream cleavage site.
Y Henry, H Wood, J P Morrissey, E Petfalski, S Kearsey, D Tollervey. EMBO J 1994
259
15

Dynamic conformational model for the role of ITS2 in pre-rRNA processing in yeast.
Colette A Côté, Chris L Greer, Brenda A Peculis. RNA 2002
77
15

Characterization of a crucifer plant pre-rRNA processing complex.
J Sáez-Vasquez, D Caparros-Ruiz, F Barneche, M Echeverría. Biochem Soc Trans 2004
15
15

The complexity of human ribosome biogenesis revealed by systematic nucleolar screening of Pre-rRNA processing factors.
Lionel Tafforeau, Christiane Zorbas, Jean-Louis Langhendries, Sahra-Taylor Mullineux, Vassiliki Stamatopoulou, Romain Mullier, Ludivine Wacheul, Denis L J Lafontaine. Mol Cell 2013
251
15

Arabidopsis thaliana XRN2 is required for primary cleavage in the pre-ribosomal RNA.
Monika Zakrzewska-Placzek, Frederic F Souret, Grzegorz J Sobczyk, Pamela J Green, Joanna Kufel. Nucleic Acids Res 2010
72
15



A common core of secondary structure of the internal transcribed spacer 2 (ITS2) throughout the Eukaryota.
Jörg Schultz, Stefanie Maisel, Daniel Gerlach, Tobias Müller, Matthias Wolf. RNA 2005
181
15

atBRX1-1 and atBRX1-2 are involved in an alternative rRNA processing pathway in Arabidopsis thaliana.
Benjamin L Weis, Denise Palm, Sandra Missbach, Markus T Bohnsack, Enrico Schleiff. RNA 2015
31
15

Processing of preribosomal RNA in Saccharomyces cerevisiae.
Antonio Fernández-Pevida, Dieter Kressler, Jesús de la Cruz. Wiley Interdiscip Rev RNA 2015
57
15

A hierarchical model for assembly of eukaryotic 60S ribosomal subunit domains.
Michael Gamalinda, Uli Ohmayer, Jelena Jakovljevic, Beril Kumcuoglu, Joshua Woolford, Bertrade Mbom, Lawrence Lin, John L Woolford. Genes Dev 2014
77
15

Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae.
M S Longtine, A McKenzie, D J Demarini, N G Shah, A Wach, A Brachat, P Philippsen, J R Pringle. Yeast 1998
15

Analysis of the in vivo assembly pathway of eukaryotic 40S ribosomal proteins.
Sébastien Ferreira-Cerca, Gisela Pöll, Holger Kühn, Andreas Neueder, Steffen Jakob, Herbert Tschochner, Philipp Milkereit. Mol Cell 2007
106
15


Assembly factors Rpf2 and Rrs1 recruit 5S rRNA and ribosomal proteins rpL5 and rpL11 into nascent ribosomes.
Jingyu Zhang, Piyanun Harnpicharnchai, Jelena Jakovljevic, Lan Tang, Yurong Guo, Marlene Oeffinger, Michael P Rout, Shawna L Hiley, Timothy Hughes, John L Woolford. Genes Dev 2007
138
15

Structure of the pre-60S ribosomal subunit with nuclear export factor Arx1 bound at the exit tunnel.
Bettina Bradatsch, Christoph Leidig, Sander Granneman, Marén Gnädig, David Tollervey, Bettina Böttcher, Roland Beckmann, Ed Hurt. Nat Struct Mol Biol 2012
85
15

Rrp5p, Noc1p and Noc2p form a protein module which is part of early large ribosomal subunit precursors in S. cerevisiae.
Thomas Hierlmeier, Juliane Merl, Martina Sauert, Jorge Perez-Fernandez, Patrick Schultz, Astrid Bruckmann, Stephan Hamperl, Uli Ohmayer, Reinhard Rachel, Anja Jacob,[...]. Nucleic Acids Res 2013
40
15

Inside the 40S ribosome assembly machinery.
Katrin Karbstein. Curr Opin Chem Biol 2011
46
15

Diverse roles of assembly factors revealed by structures of late nuclear pre-60S ribosomes.
Shan Wu, Beril Tutuncuoglu, Kaige Yan, Hailey Brown, Yixiao Zhang, Dan Tan, Michael Gamalinda, Yi Yuan, Zhifei Li, Jelena Jakovljevic,[...]. Nature 2016
112
15


High-resolution structure of the eukaryotic 80S ribosome.
Gulnara Yusupova, Marat Yusupov. Annu Rev Biochem 2014
78
15


LIN28 alters cell fate succession and acts independently of the let-7 microRNA during neurogliogenesis in vitro.
Erica Balzer, Christian Heine, Qiang Jiang, Vivian M Lee, Eric G Moss. Development 2010
142
7

Galaxy: a web-based genome analysis tool for experimentalists.
Daniel Blankenberg, Gregory Von Kuster, Nathaniel Coraor, Guruprasad Ananda, Ross Lazarus, Mary Mangan, Anton Nekrutenko, James Taylor. Curr Protoc Mol Biol 2010
935
7

The 3' end formation in small RNAs.
Karthika Perumal, Ram Reddy. Gene Expr 2002
34
7

Identification and characterization of nuclear non-canonical poly(A) polymerases from Trypanosoma brucei.
Ronald D Etheridge, Daniel M Clemens, Paul D Gershon, Ruslan Aphasizhev. Mol Biochem Parasitol 2009
24
7


A paired-end sequencing strategy to map the complex landscape of transcription initiation.
Ting Ni, David L Corcoran, Elizabeth A Rach, Shen Song, Eric P Spana, Yuan Gao, Uwe Ohler, Jun Zhu. Nat Methods 2010
110
7

F-Seq: a feature density estimator for high-throughput sequence tags.
Alan P Boyle, Justin Guinney, Gregory E Crawford, Terrence S Furey. Bioinformatics 2008
241
7

Decoding the non-coding RNAs in Alzheimer's disease.
Nicole Schonrock, Jürgen Götz. Cell Mol Life Sci 2012
51
7

Mechanisms and consequences of alternative polyadenylation.
Dafne Campigli Di Giammartino, Kensei Nishida, James L Manley. Mol Cell 2011
428
7

Introduction: RNA and the treatment of human cancer.
Oystein Bruserud. Curr Pharm Biotechnol 2007
10
10

Trypanosome MTR4 is involved in rRNA processing.
Marina Cristodero, Christine E Clayton. Nucleic Acids Res 2007
32
7


Comparison of the yeast and human nuclear exosome complexes.
Katherine E Sloan, Claudia Schneider, Nicholas J Watkins. Biochem Soc Trans 2012
30
7

Interaction profiling identifies the human nuclear exosome targeting complex.
Michal Lubas, Marianne S Christensen, Maiken S Kristiansen, Michal Domanski, Lasse G Falkenby, Søren Lykke-Andersen, Jens S Andersen, Andrzej Dziembowski, Torben Heick Jensen. Mol Cell 2011
260
7

Systematic gene regulation involving miRNAs during neuronal differentiation of mouse P19 embryonic carcinoma cell.
Akiko Eda, Yoshiko Tamura, Mariko Yoshida, Hirohiko Hohjoh. Biochem Biophys Res Commun 2009
22
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.