A citation-based method for searching scientific literature

Aleksey S Komissarov, Ekaterina V Gavrilova, Sergey Ju Demin, Alexander M Ishov, Olga I Podgornaya. BMC Genomics 2011
Times Cited: 36







List of co-cited articles
334 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Mouse centric and pericentric satellite repeats form distinct functional heterochromatin.
Mounia Guenatri, Delphine Bailly, Christèle Maison, Geneviève Almouzni. J Cell Biol 2004
341
30

Initial sequencing and comparative analysis of the mouse genome.
Robert H Waterston, Kerstin Lindblad-Toh, Ewan Birney, Jane Rogers, Josep F Abril, Pankaj Agarwal, Richa Agarwala, Rachel Ainscough, Marina Alexandersson, Peter An,[...]. Nature 2002
27

A strand-specific burst in transcription of pericentric satellites is required for chromocenter formation and early mouse development.
Aline V Probst, Ikuhiro Okamoto, Miguel Casanova, Fatima El Marjou, Patricia Le Baccon, Geneviève Almouzni. Dev Cell 2010
203
27

High-resolution organization of mouse centromeric and pericentromeric DNA.
I Kuznetsova, O Podgornaya, M A Ferguson-Smith. Cytogenet Genome Res 2006
33
30

Aberrant overexpression of satellite repeats in pancreatic and other epithelial cancers.
David T Ting, Doron Lipson, Suchismita Paul, Brian W Brannigan, Sara Akhavanfard, Erik J Coffman, Gianmarco Contino, Vikram Deshpande, A John Iafrate, Stan Letovsky,[...]. Science 2011
321
22

Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution.
Daniël P Melters, Keith R Bradnam, Hugh A Young, Natalie Telis, Michael R May, J Graham Ruby, Robert Sebra, Paul Peluso, John Eid, David Rank,[...]. Genome Biol 2013
225
22



Genome-wide characterization of centromeric satellites from multiple mammalian genomes.
Can Alkan, Maria Francesca Cardone, Claudia Rita Catacchio, Francesca Antonacci, Stephen J O'Brien, Oliver A Ryder, Stefania Purgato, Monica Zoli, Giuliano Della Valle, Evan E Eichler,[...]. Genome Res 2011
58
19


Mouse telocentric sequences reveal a high rate of homogenization and possible role in Robertsonian translocation.
Paul Kalitsis, Belinda Griffiths, K H Andy Choo. Proc Natl Acad Sci U S A 2006
44
16

Structure-specific DNA-binding proteins as the foundation for three-dimensional chromatin organization.
O I Podgornaya, A P Voronin, N I Enukashvily, I V Matveev, I B Lobov. Int Rev Cytol 2003
26
23

Rapid evolution of mouse Y centromere repeat DNA belies recent sequence stability.
Mark D Pertile, Alison N Graham, K H Andy Choo, Paul Kalitsis. Genome Res 2009
39
16


Evidence for the existence of satellite DNA-containing connection between metaphase chromosomes.
I S Kuznetsova, N I Enukashvily, E M Noniashvili, A N Shatrova, N D Aksenov, V V Zenin, A P Dyban, O I Podgornaya. J Cell Biochem 2007
21
28

Suv39h-mediated histone H3 lysine 9 methylation directs DNA methylation to major satellite repeats at pericentric heterochromatin.
Bernhard Lehnertz, Yoshihide Ueda, Alwin A H A Derijck, Ulrich Braunschweig, Laura Perez-Burgos, Stefan Kubicek, Taiping Chen, En Li, Thomas Jenuwein, Antoine H F M Peters. Curr Biol 2003
873
16

CENP-B binds a novel centromeric sequence in the Asian mouse Mus caroli.
D Kipling, A R Mitchell, H Masumoto, H E Wilson, L Nicol, H J Cooke. Mol Cell Biol 1995
87
16

Nuclear architecture of rod photoreceptor cells adapts to vision in mammalian evolution.
Irina Solovei, Moritz Kreysing, Christian Lanctôt, Süleyman Kösem, Leo Peichl, Thomas Cremer, Jochen Guck, Boris Joffe. Cell 2009
471
16

Transcription of Satellite III non-coding RNAs is a general stress response in human cells.
Rut Valgardsdottir, Ilaria Chiodi, Manuela Giordano, Antonio Rossi, Silvia Bazzini, Claudia Ghigna, Silvano Riva, Giuseppe Biamonti. Nucleic Acids Res 2008
137
13


Analysis of the largest tandemly repeated DNA families in the human genome.
Peter E Warburton, Dan Hasson, Flavia Guillem, Chloe Lescale, Xiaoping Jin, Gyorgy Abrusan. BMC Genomics 2008
96
13

Genomic and genetic definition of a functional human centromere.
M G Schueler, A W Higgins, M K Rudd, K Gustashaw, H F Willard. Science 2001
342
13


New types of mouse centromeric satellite DNAs.
Inna S Kuznetsova, Andrey N Prusov, Natella I Enukashvily, Olga I Podgornaya. Chromosome Res 2005
26
19

BRCA1 tumour suppression occurs via heterochromatin-mediated silencing.
Quan Zhu, Gerald M Pao, Alexis M Huynh, Hoonkyo Suh, Nina Tonnu, Petra M Nederlof, Fred H Gage, Inder M Verma. Nature 2011
311
13


A new class of retroviral and satellite encoded small RNAs emanates from mammalian centromeres.
Dawn M Carone, Mark S Longo, Gianni C Ferreri, Laura Hall, Melissa Harris, Nicole Shook, Kira V Bulazel, Benjamin R Carone, Craig Obergfell, Michael J O'Neill,[...]. Chromosoma 2009
105
13

Mammalian satellite DNA: a speaking dumb.
Natella I Enukashvily, Nikita V Ponomartsev. Adv Protein Chem Struct Biol 2013
33
15

Basic local alignment search tool.
S F Altschul, W Gish, W Miller, E W Myers, D J Lipman. J Mol Biol 1990
13

Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor.
Oleksiy Kohany, Andrew J Gentles, Lukasz Hankus, Jerzy Jurka. BMC Bioinformatics 2006
557
13


LINE-related component of mouse heterochromatin and complex chromocenters' composition.
Inna S Kuznetsova, Dmitrii I Ostromyshenskii, Alexei S Komissarov, Andrei N Prusov, Irina S Waisertreiger, Anna V Gorbunova, Vladimir A Trifonov, Malcolm A Ferguson-Smith, Olga I Podgornaya. Chromosome Res 2016
6
83

Pericentromeric satellite repeat expansions through RNA-derived DNA intermediates in cancer.
Francesca Bersani, Eunjung Lee, Peter V Kharchenko, Andrew W Xu, Mingzhu Liu, Kristina Xega, Olivia C MacKenzie, Brian W Brannigan, Ben S Wittner, Hyunchul Jung,[...]. Proc Natl Acad Sci U S A 2015
81
13

Specificity of SAF-A and lamin B binding in vitro correlates with the satellite DNA bending state.
I B Lobov, K Tsutsui, A R Mitchell, O I Podgornaya. J Cell Biochem 2001
29
13

Alpha-satellite DNA of primates: old and new families.
I Alexandrov, A Kazakov, I Tumeneva, V Shepelev, Y Yurov. Chromosoma 2001
116
11

Higher-order structure in pericentric heterochromatin involves a distinct pattern of histone modification and an RNA component.
Christèle Maison, Delphine Bailly, Antoine H F M Peters, Jean-Pierre Quivy, Danièle Roche, Angela Taddei, Monika Lachner, Thomas Jenuwein, Geneviève Almouzni. Nat Genet 2002
533
11

Satellite DNA-mediated effects on genome regulation.
Z Pezer, J Brajković, I Feliciello, D Ugarkovć. Genome Dyn 2012
50
11

Satellite DNA spatial localization and transcriptional activity in mouse embryonic E-14 and IOUD2 stem cells.
N I Enukashvily, A B Malashicheva, I S-R Waisertreiger. Cytogenet Genome Res 2009
12
33

Chromosomal localization of mouse satellite DNA.
M L Pardue, J G Gall. Science 1970
913
11

Human centromeric DNAs.
C Lee, R Wevrick, R B Fisher, M A Ferguson-Smith, C C Lin. Hum Genet 1997
180
11

Specific interaction of mouse major satellite with MAR-binding protein SAF-A.
I B Lobov, K Tsutsui, A R Mitchell, O I Podgornaya. Eur J Cell Biol 2000
14
28



Stress-induced transcription of satellite III repeats.
Caroline Jolly, Alexandra Metz, Jérôme Govin, Marc Vigneron, Bryan M Turner, Saadi Khochbin, Claire Vourc'h. J Cell Biol 2004
204
11

Centromere RNA is a key component for the assembly of nucleoproteins at the nucleolus and centromere.
Lee H Wong, Kate H Brettingham-Moore, Lyn Chan, Julie M Quach, Melissa A Anderson, Emma L Northrop, Ross Hannan, Richard Saffery, Margaret L Shaw, Evan Williams,[...]. Genome Res 2007
201
11

Genomes of replicatively senescent cells undergo global epigenetic changes leading to gene silencing and activation of transposable elements.
Marco De Cecco, Steven W Criscione, Edward J Peckham, Sara Hillenmeyer, Eliza A Hamm, Jayameenakshi Manivannan, Abigail L Peterson, Jill A Kreiling, Nicola Neretti, John M Sedivy. Aging Cell 2013
212
11

Transcriptional activation of a constitutive heterochromatic domain of the human genome in response to heat shock.
Nicoletta Rizzi, Marco Denegri, Ilaria Chiodi, Margherita Corioni, Rut Valgardsdottir, Fabio Cobianchi, Silvano Riva, Giuseppe Biamonti. Mol Biol Cell 2004
137
11

Mouse centromere mapping using oligonucleotide probes that detect variants of the minor satellite.
D Kipling, H E Wilson, A R Mitchell, B A Taylor, H J Cooke. Chromosoma 1994
55
11

Genome distribution, chromosomal allocation, and organization of the major and minor satellite DNAs in 11 species and subspecies of the genus Mus.
S Garagna, C A Redi, E Capanna, N Andayani, R M Alfano, P Doi, G Viale. Cytogenet Cell Genet 1993
32
12

Satellite DNA as a driver of population divergence in the red flour beetle Tribolium castaneum.
Isidoro Feliciello, Ivana Akrap, Josip Brajković, Ivo Zlatar, Đurđica Ugarković. Genome Biol Evol 2014
35
11


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.