Nicholas T Ingolia, Liana F Lareau, Jonathan S Weissman. Cell 2011
Times Cited: 1325
Times Cited: 1325
Times Cited
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Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling.
Nicholas T Ingolia, Sina Ghaemmaghami, John R S Newman, Jonathan S Weissman. Science 2009
Nicholas T Ingolia, Sina Ghaemmaghami, John R S Newman, Jonathan S Weissman. Science 2009
54
Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution.
Sooncheol Lee, Botao Liu, Soohyun Lee, Sheng-Xiong Huang, Ben Shen, Shu-Bing Qian. Proc Natl Acad Sci U S A 2012
Sooncheol Lee, Botao Liu, Soohyun Lee, Sheng-Xiong Huang, Ben Shen, Shu-Bing Qian. Proc Natl Acad Sci U S A 2012
25
Pervasive functional translation of noncanonical human open reading frames.
Jin Chen, Andreas-David Brunner, J Zachery Cogan, James K Nuñez, Alexander P Fields, Britt Adamson, Daniel N Itzhak, Jason Y Li, Matthias Mann, Manuel D Leonetti,[...]. Science 2020
Jin Chen, Andreas-David Brunner, J Zachery Cogan, James K Nuñez, Alexander P Fields, Britt Adamson, Daniel N Itzhak, Jason Y Li, Matthias Mann, Manuel D Leonetti,[...]. Science 2020
20
The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments.
Nicholas T Ingolia, Gloria A Brar, Silvia Rouskin, Anna M McGeachy, Jonathan S Weissman. Nat Protoc 2012
Nicholas T Ingolia, Gloria A Brar, Silvia Rouskin, Anna M McGeachy, Jonathan S Weissman. Nat Protoc 2012
17
A micropeptide encoded by a putative long noncoding RNA regulates muscle performance.
Douglas M Anderson, Kelly M Anderson, Chi-Lun Chang, Catherine A Makarewich, Benjamin R Nelson, John R McAnally, Prasad Kasaragod, John M Shelton, Jen Liou, Rhonda Bassel-Duby,[...]. Cell 2015
Douglas M Anderson, Kelly M Anderson, Chi-Lun Chang, Catherine A Makarewich, Benjamin R Nelson, John R McAnally, Prasad Kasaragod, John M Shelton, Jen Liou, Rhonda Bassel-Duby,[...]. Cell 2015
16
Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation.
Ariel A Bazzini, Timothy G Johnstone, Romain Christiano, Sebastian D Mackowiak, Benedikt Obermayer, Elizabeth S Fleming, Charles E Vejnar, Miler T Lee, Nikolaus Rajewsky, Tobias C Walther,[...]. EMBO J 2014
Ariel A Bazzini, Timothy G Johnstone, Romain Christiano, Sebastian D Mackowiak, Benedikt Obermayer, Elizabeth S Fleming, Charles E Vejnar, Miler T Lee, Nikolaus Rajewsky, Tobias C Walther,[...]. EMBO J 2014
15
A Peptide Encoded by a Putative lncRNA HOXB-AS3 Suppresses Colon Cancer Growth.
Jin-Zhou Huang, Min Chen, De Chen, Xing-Cheng Gao, Song Zhu, Hongyang Huang, Min Hu, Huifang Zhu, Guang-Rong Yan. Mol Cell 2017
Jin-Zhou Huang, Min Chen, De Chen, Xing-Cheng Gao, Song Zhu, Hongyang Huang, Min Hu, Huifang Zhu, Guang-Rong Yan. Mol Cell 2017
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The Translational Landscape of the Human Heart.
Sebastiaan van Heesch, Franziska Witte, Valentin Schneider-Lunitz, Jana F Schulz, Eleonora Adami, Allison B Faber, Marieluise Kirchner, Henrike Maatz, Susanne Blachut, Clara-Louisa Sandmann,[...]. Cell 2019
Sebastiaan van Heesch, Franziska Witte, Valentin Schneider-Lunitz, Jana F Schulz, Eleonora Adami, Allison B Faber, Marieluise Kirchner, Henrike Maatz, Susanne Blachut, Clara-Louisa Sandmann,[...]. Cell 2019
14
Transcriptome-wide measurement of translation by ribosome profiling.
Nicholas J McGlincy, Nicholas T Ingolia. Methods 2017
Nicholas J McGlincy, Nicholas T Ingolia. Methods 2017
13
Ribosome profiling reveals pervasive translation outside of annotated protein-coding genes.
Nicholas T Ingolia, Gloria A Brar, Noam Stern-Ginossar, Michael S Harris, Gaëlle J S Talhouarne, Sarah E Jackson, Mark R Wills, Jonathan S Weissman. Cell Rep 2014
Nicholas T Ingolia, Gloria A Brar, Noam Stern-Ginossar, Michael S Harris, Gaëlle J S Talhouarne, Sarah E Jackson, Mark R Wills, Jonathan S Weissman. Cell Rep 2014
13
Non-AUG translation: a new start for protein synthesis in eukaryotes.
Michael G Kearse, Jeremy E Wilusz. Genes Dev 2017
Michael G Kearse, Jeremy E Wilusz. Genes Dev 2017
12
A human microprotein that interacts with the mRNA decapping complex.
Nadia G D'Lima, Jiao Ma, Lauren Winkler, Qian Chu, Ken H Loh, Elizabeth O Corpuz, Bogdan A Budnik, Jens Lykke-Andersen, Alan Saghatelian, Sarah A Slavoff. Nat Chem Biol 2017
Nadia G D'Lima, Jiao Ma, Lauren Winkler, Qian Chu, Ken H Loh, Elizabeth O Corpuz, Bogdan A Budnik, Jens Lykke-Andersen, Alan Saghatelian, Sarah A Slavoff. Nat Chem Biol 2017
12
Translational control by 5'-untranslated regions of eukaryotic mRNAs.
Alan G Hinnebusch, Ivaylo P Ivanov, Nahum Sonenberg. Science 2016
Alan G Hinnebusch, Ivaylo P Ivanov, Nahum Sonenberg. Science 2016
11
Peptidomic discovery of short open reading frame-encoded peptides in human cells.
Sarah A Slavoff, Andrew J Mitchell, Adam G Schwaid, Moran N Cabili, Jiao Ma, Joshua Z Levin, Amir D Karger, Bogdan A Budnik, John L Rinn, Alan Saghatelian. Nat Chem Biol 2013
Sarah A Slavoff, Andrew J Mitchell, Adam G Schwaid, Moran N Cabili, Jiao Ma, Joshua Z Levin, Amir D Karger, Bogdan A Budnik, John L Rinn, Alan Saghatelian. Nat Chem Biol 2013
11
Quantitative profiling of initiating ribosomes in vivo.
Xiangwei Gao, Ji Wan, Botao Liu, Ming Ma, Ben Shen, Shu-Bing Qian. Nat Methods 2015
Xiangwei Gao, Ji Wan, Botao Liu, Ming Ma, Ben Shen, Shu-Bing Qian. Nat Methods 2015
11
A Regression-Based Analysis of Ribosome-Profiling Data Reveals a Conserved Complexity to Mammalian Translation.
Alexander P Fields, Edwin H Rodriguez, Marko Jovanovic, Noam Stern-Ginossar, Brian J Haas, Philipp Mertins, Raktima Raychowdhury, Nir Hacohen, Steven A Carr, Nicholas T Ingolia,[...]. Mol Cell 2015
Alexander P Fields, Edwin H Rodriguez, Marko Jovanovic, Noam Stern-Ginossar, Brian J Haas, Philipp Mertins, Raktima Raychowdhury, Nir Hacohen, Steven A Carr, Nicholas T Ingolia,[...]. Mol Cell 2015
11
STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
11
Upstream open reading frames cause widespread reduction of protein expression and are polymorphic among humans.
Sarah E Calvo, David J Pagliarini, Vamsi K Mootha. Proc Natl Acad Sci U S A 2009
Sarah E Calvo, David J Pagliarini, Vamsi K Mootha. Proc Natl Acad Sci U S A 2009
11
Translation inhibitors cause abnormalities in ribosome profiling experiments.
Maxim V Gerashchenko, Vadim N Gladyshev. Nucleic Acids Res 2014
Maxim V Gerashchenko, Vadim N Gladyshev. Nucleic Acids Res 2014
10
mTORC1 and muscle regeneration are regulated by the LINC00961-encoded SPAR polypeptide.
Akinobu Matsumoto, Alessandra Pasut, Masaki Matsumoto, Riu Yamashita, Jacqueline Fung, Emanuele Monteleone, Alan Saghatelian, Keiichi I Nakayama, John G Clohessy, Pier Paolo Pandolfi. Nature 2017
Akinobu Matsumoto, Alessandra Pasut, Masaki Matsumoto, Riu Yamashita, Jacqueline Fung, Emanuele Monteleone, Alan Saghatelian, Keiichi I Nakayama, John G Clohessy, Pier Paolo Pandolfi. Nature 2017
10
A human short open reading frame (sORF)-encoded polypeptide that stimulates DNA end joining.
Sarah A Slavoff, Jinho Heo, Bogdan A Budnik, Leslyn A Hanakahi, Alan Saghatelian. J Biol Chem 2014
Sarah A Slavoff, Jinho Heo, Bogdan A Budnik, Leslyn A Hanakahi, Alan Saghatelian. J Biol Chem 2014
11
High-resolution view of the yeast meiotic program revealed by ribosome profiling.
Gloria A Brar, Moran Yassour, Nir Friedman, Aviv Regev, Nicholas T Ingolia, Jonathan S Weissman. Science 2012
Gloria A Brar, Moran Yassour, Nir Friedman, Aviv Regev, Nicholas T Ingolia, Jonathan S Weissman. Science 2012
10
A peptide encoded by a transcript annotated as long noncoding RNA enhances SERCA activity in muscle.
Benjamin R Nelson, Catherine A Makarewich, Douglas M Anderson, Benjamin R Winders, Constantine D Troupes, Fenfen Wu, Austin L Reese, John R McAnally, Xiongwen Chen, Ege T Kavalali,[...]. Science 2016
Benjamin R Nelson, Catherine A Makarewich, Douglas M Anderson, Benjamin R Winders, Constantine D Troupes, Fenfen Wu, Austin L Reese, John R McAnally, Xiongwen Chen, Ege T Kavalali,[...]. Science 2016
10
Regulation of translation initiation in eukaryotes: mechanisms and biological targets.
Nahum Sonenberg, Alan G Hinnebusch. Cell 2009
Nahum Sonenberg, Alan G Hinnebusch. Cell 2009
9
An update on sORFs.org: a repository of small ORFs identified by ribosome profiling.
Volodimir Olexiouk, Wim Van Criekinge, Gerben Menschaert. Nucleic Acids Res 2018
Volodimir Olexiouk, Wim Van Criekinge, Gerben Menschaert. Nucleic Acids Res 2018
11
Extensive translation of small Open Reading Frames revealed by Poly-Ribo-Seq.
Julie L Aspden, Ying Chen Eyre-Walker, Rose J Phillips, Unum Amin, Muhammad Ali S Mumtaz, Michele Brocard, Juan-Pablo Couso. Elife 2014
Julie L Aspden, Ying Chen Eyre-Walker, Rose J Phillips, Unum Amin, Muhammad Ali S Mumtaz, Michele Brocard, Juan-Pablo Couso. Elife 2014
9
Detecting actively translated open reading frames in ribosome profiling data.
Lorenzo Calviello, Neelanjan Mukherjee, Emanuel Wyler, Henrik Zauber, Antje Hirsekorn, Matthias Selbach, Markus Landthaler, Benedikt Obermayer, Uwe Ohler. Nat Methods 2016
Lorenzo Calviello, Neelanjan Mukherjee, Emanuel Wyler, Henrik Zauber, Antje Hirsekorn, Matthias Selbach, Markus Landthaler, Benedikt Obermayer, Uwe Ohler. Nat Methods 2016
9
Translation from unconventional 5' start sites drives tumour initiation.
Ataman Sendoel, Joshua G Dunn, Edwin H Rodriguez, Shruti Naik, Nicholas C Gomez, Brian Hurwitz, John Levorse, Brian D Dill, Daniel Schramek, Henrik Molina,[...]. Nature 2017
Ataman Sendoel, Joshua G Dunn, Edwin H Rodriguez, Shruti Naik, Nicholas C Gomez, Brian Hurwitz, John Levorse, Brian D Dill, Daniel Schramek, Henrik Molina,[...]. Nature 2017
9
Emerging evidence for functional peptides encoded by short open reading frames.
Shea J Andrews, Joseph A Rothnagel. Nat Rev Genet 2014
Shea J Andrews, Joseph A Rothnagel. Nat Rev Genet 2014
9
Dynamics of ribosome scanning and recycling revealed by translation complex profiling.
Stuart K Archer, Nikolay E Shirokikh, Traude H Beilharz, Thomas Preiss. Nature 2016
Stuart K Archer, Nikolay E Shirokikh, Traude H Beilharz, Thomas Preiss. Nature 2016
8
Distinct stages of the translation elongation cycle revealed by sequencing ribosome-protected mRNA fragments.
Liana F Lareau, Dustin H Hite, Gregory J Hogan, Patrick O Brown. Elife 2014
Liana F Lareau, Dustin H Hite, Gregory J Hogan, Patrick O Brown. Elife 2014
8
OpenProt: a more comprehensive guide to explore eukaryotic coding potential and proteomes.
Marie A Brunet, Mylène Brunelle, Jean-François Lucier, Vivian Delcourt, Maxime Levesque, Frédéric Grenier, Sondos Samandi, Sébastien Leblanc, Jean-David Aguilar, Pascal Dufour,[...]. Nucleic Acids Res 2019
Marie A Brunet, Mylène Brunelle, Jean-François Lucier, Vivian Delcourt, Maxime Levesque, Frédéric Grenier, Sondos Samandi, Sébastien Leblanc, Jean-David Aguilar, Pascal Dufour,[...]. Nucleic Acids Res 2019
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Reinitiation involving upstream ORFs regulates ATF4 mRNA translation in mammalian cells.
Krishna M Vattem, Ronald C Wek. Proc Natl Acad Sci U S A 2004
Krishna M Vattem, Ronald C Wek. Proc Natl Acad Sci U S A 2004
8
Genome-wide identification and differential analysis of translational initiation.
Peng Zhang, Dandan He, Yi Xu, Jiakai Hou, Bih-Fang Pan, Yunfei Wang, Tao Liu, Christel M Davis, Erik A Ehli, Lin Tan,[...]. Nat Commun 2017
Peng Zhang, Dandan He, Yi Xu, Jiakai Hou, Bih-Fang Pan, Yunfei Wang, Tao Liu, Christel M Davis, Erik A Ehli, Lin Tan,[...]. Nat Commun 2017
16
Ribosome profiling provides evidence that large noncoding RNAs do not encode proteins.
Mitchell Guttman, Pamela Russell, Nicholas T Ingolia, Jonathan S Weissman, Eric S Lander. Cell 2013
Mitchell Guttman, Pamela Russell, Nicholas T Ingolia, Jonathan S Weissman, Eric S Lander. Cell 2013
8
Ribosome profiling reveals the what, when, where and how of protein synthesis.
Gloria A Brar, Jonathan S Weissman. Nat Rev Mol Cell Biol 2015
Gloria A Brar, Jonathan S Weissman. Nat Rev Mol Cell Biol 2015
8
Improved Ribo-seq enables identification of cryptic translation events.
Florian Erhard, Anne Halenius, Cosima Zimmermann, Anne L'Hernault, Daniel J Kowalewski, Michael P Weekes, Stefan Stevanovic, Ralf Zimmer, Lars Dölken. Nat Methods 2018
Florian Erhard, Anne Halenius, Cosima Zimmermann, Anne L'Hernault, Daniel J Kowalewski, Michael P Weekes, Stefan Stevanovic, Ralf Zimmer, Lars Dölken. Nat Methods 2018
10
Leucine-tRNA initiates at CUG start codons for protein synthesis and presentation by MHC class I.
Shelley R Starck, Vivian Jiang, Mariana Pavon-Eternod, Sharanya Prasad, Brian McCarthy, Tao Pan, Nilabh Shastri. Science 2012
Shelley R Starck, Vivian Jiang, Mariana Pavon-Eternod, Sharanya Prasad, Brian McCarthy, Tao Pan, Nilabh Shastri. Science 2012
8
Integrated proteogenomic deep sequencing and analytics accurately identify non-canonical peptides in tumor immunopeptidomes.
Chloe Chong, Markus Müller, HuiSong Pak, Dermot Harnett, Florian Huber, Delphine Grun, Marion Leleu, Aymeric Auger, Marion Arnaud, Brian J Stevenson,[...]. Nat Commun 2020
Chloe Chong, Markus Müller, HuiSong Pak, Dermot Harnett, Florian Huber, Delphine Grun, Marion Leleu, Aymeric Auger, Marion Arnaud, Brian J Stevenson,[...]. Nat Commun 2020
10
A systematically-revised ribosome profiling method for bacteria reveals pauses at single-codon resolution.
Fuad Mohammad, Rachel Green, Allen R Buskirk. Elife 2019
Fuad Mohammad, Rachel Green, Allen R Buskirk. Elife 2019
10
Translation from the 5' untranslated region shapes the integrated stress response.
Shelley R Starck, Jordan C Tsai, Keling Chen, Michael Shodiya, Lei Wang, Kinnosuke Yahiro, Manuela Martins-Green, Nilabh Shastri, Peter Walter. Science 2016
Shelley R Starck, Jordan C Tsai, Keling Chen, Michael Shodiya, Lei Wang, Kinnosuke Yahiro, Manuela Martins-Green, Nilabh Shastri, Peter Walter. Science 2016
8
High-Resolution Ribosome Profiling Defines Discrete Ribosome Elongation States and Translational Regulation during Cellular Stress.
Colin Chih-Chien Wu, Boris Zinshteyn, Karen A Wehner, Rachel Green. Mol Cell 2019
Colin Chih-Chien Wu, Boris Zinshteyn, Karen A Wehner, Rachel Green. Mol Cell 2019
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The mechanism of eukaryotic translation initiation and principles of its regulation.
Richard J Jackson, Christopher U T Hellen, Tatyana V Pestova. Nat Rev Mol Cell Biol 2010
Richard J Jackson, Christopher U T Hellen, Tatyana V Pestova. Nat Rev Mol Cell Biol 2010
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A unifying model for mTORC1-mediated regulation of mRNA translation.
Carson C Thoreen, Lynne Chantranupong, Heather R Keys, Tim Wang, Nathanael S Gray, David M Sabatini. Nature 2012
Carson C Thoreen, Lynne Chantranupong, Heather R Keys, Tim Wang, Nathanael S Gray, David M Sabatini. Nature 2012
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Ribosome Collisions Trigger General Stress Responses to Regulate Cell Fate.
Colin Chih-Chien Wu, Amy Peterson, Boris Zinshteyn, Sergi Regot, Rachel Green. Cell 2020
Colin Chih-Chien Wu, Amy Peterson, Boris Zinshteyn, Sergi Regot, Rachel Green. Cell 2020
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Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
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SmProt: a database of small proteins encoded by annotated coding and non-coding RNA loci.
Yajing Hao, Lili Zhang, Yiwei Niu, Tanxi Cai, Jianjun Luo, Shunmin He, Bao Zhang, Dejiu Zhang, Yan Qin, Fuquan Yang,[...]. Brief Bioinform 2018
Yajing Hao, Lili Zhang, Yiwei Niu, Tanxi Cai, Jianjun Luo, Shunmin He, Bao Zhang, Dejiu Zhang, Yan Qin, Fuquan Yang,[...]. Brief Bioinform 2018
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Landscape of transcription in human cells.
Sarah Djebali, Carrie A Davis, Angelika Merkel, Alex Dobin, Timo Lassmann, Ali Mortazavi, Andrea Tanzer, Julien Lagarde, Wei Lin, Felix Schlesinger,[...]. Nature 2012
Sarah Djebali, Carrie A Davis, Angelika Merkel, Alex Dobin, Timo Lassmann, Ali Mortazavi, Andrea Tanzer, Julien Lagarde, Wei Lin, Felix Schlesinger,[...]. Nature 2012
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A micropeptide encoded by lncRNA MIR155HG suppresses autoimmune inflammation via modulating antigen presentation.
Liman Niu, Fangzhou Lou, Yang Sun, Libo Sun, Xiaojie Cai, Zhaoyuan Liu, Hong Zhou, Hong Wang, Zhikai Wang, Jing Bai,[...]. Sci Adv 2020
Liman Niu, Fangzhou Lou, Yang Sun, Libo Sun, Xiaojie Cai, Zhaoyuan Liu, Hong Zhou, Hong Wang, Zhikai Wang, Jing Bai,[...]. Sci Adv 2020
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Global analysis of ribosome-associated noncoding RNAs unveils new modes of translational regulation.
Jérémie Bazin, Katja Baerenfaller, Sager J Gosai, Brian D Gregory, Martin Crespi, Julia Bailey-Serres. Proc Natl Acad Sci U S A 2017
Jérémie Bazin, Katja Baerenfaller, Sager J Gosai, Brian D Gregory, Martin Crespi, Julia Bailey-Serres. Proc Natl Acad Sci U S A 2017
7
Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.