Bujie Zhan, João Fadista, Bo Thomsen, Jakob Hedegaard, Frank Panitz, Christian Bendixen. BMC Genomics 2011
Times Cited: 56
Times Cited: 56
Times Cited
Times Co-cited
Similarity
Whole genome resequencing of black Angus and Holstein cattle for SNP and CNV discovery.
Paul Stothard, Jung-Woo Choi, Urmila Basu, Jennifer M Sumner-Thomson, Yan Meng, Xiaoping Liao, Stephen S Moore. BMC Genomics 2011
Paul Stothard, Jung-Woo Choi, Urmila Basu, Jennifer M Sumner-Thomson, Yan Meng, Xiaoping Liao, Stephen S Moore. BMC Genomics 2011
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Copy number variation of individual cattle genomes using next-generation sequencing.
Derek M Bickhart, Yali Hou, Steven G Schroeder, Can Alkan, Maria Francesca Cardone, Lakshmi K Matukumalli, Jiuzhou Song, Robert D Schnabel, Mario Ventura, Jeremy F Taylor,[...]. Genome Res 2012
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Genomic characteristics of cattle copy number variations.
Yali Hou, George E Liu, Derek M Bickhart, Maria Francesca Cardone, Kai Wang, Eui-Soo Kim, Lakshmi K Matukumalli, Mario Ventura, Jiuzhou Song, Paul M VanRaden,[...]. BMC Genomics 2011
Yali Hou, George E Liu, Derek M Bickhart, Maria Francesca Cardone, Kai Wang, Eui-Soo Kim, Lakshmi K Matukumalli, Mario Ventura, Jiuzhou Song, Paul M VanRaden,[...]. BMC Genomics 2011
48
Analysis of copy number variations among diverse cattle breeds.
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Copy number variation in the bovine genome.
João Fadista, Bo Thomsen, Lars-Erik Holm, Christian Bendixen. BMC Genomics 2010
João Fadista, Bo Thomsen, Lars-Erik Holm, Christian Bendixen. BMC Genomics 2010
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Fast and accurate short read alignment with Burrows-Wheeler transform.
Heng Li, Richard Durbin. Bioinformatics 2009
Heng Li, Richard Durbin. Bioinformatics 2009
42
The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
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Genomic regions showing copy number variations associate with resistance or susceptibility to gastrointestinal nematodes in Angus cattle.
Yali Hou, George E Liu, Derek M Bickhart, Lakshmi K Matukumalli, Congjun Li, Jiuzhou Song, Louis C Gasbarre, Curtis P Van Tassell, Tad S Sonstegard. Funct Integr Genomics 2012
Yali Hou, George E Liu, Derek M Bickhart, Lakshmi K Matukumalli, Congjun Li, Jiuzhou Song, Louis C Gasbarre, Curtis P Van Tassell, Tad S Sonstegard. Funct Integr Genomics 2012
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Identification of copy number variations and common deletion polymorphisms in cattle.
Joon Seol Bae, Hyun Sub Cheong, Lyoung Hyo Kim, Suk NamGung, Tae Joon Park, Ji-Yong Chun, Jason Yongha Kim, Charisse Flerida A Pasaje, Jin Sol Lee, Hyoung Doo Shin. BMC Genomics 2010
Joon Seol Bae, Hyun Sub Cheong, Lyoung Hyo Kim, Suk NamGung, Tae Joon Park, Ji-Yong Chun, Jason Yongha Kim, Charisse Flerida A Pasaje, Jin Sol Lee, Hyoung Doo Shin. BMC Genomics 2010
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Global variation in copy number in the human genome.
Richard Redon, Shumpei Ishikawa, Karen R Fitch, Lars Feuk, George H Perry, T Daniel Andrews, Heike Fiegler, Michael H Shapero, Andrew R Carson, Wenwei Chen,[...]. Nature 2006
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A whole-genome assembly of the domestic cow, Bos taurus.
Aleksey V Zimin, Arthur L Delcher, Liliana Florea, David R Kelley, Michael C Schatz, Daniela Puiu, Finnian Hanrahan, Geo Pertea, Curtis P Van Tassell, Tad S Sonstegard,[...]. Genome Biol 2009
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PennCNV: an integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data.
Kai Wang, Mingyao Li, Dexter Hadley, Rui Liu, Joseph Glessner, Struan F A Grant, Hakon Hakonarson, Maja Bucan. Genome Res 2007
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Genome structural variation discovery and genotyping.
Can Alkan, Bradley P Coe, Evan E Eichler. Nat Rev Genet 2011
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Genome-wide identification of copy number variations in Chinese Holstein.
Li Jiang, Jicai Jiang, Jiying Wang, Xiangdong Ding, Jianfeng Liu, Qin Zhang. PLoS One 2012
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Fine mapping of copy number variations on two cattle genome assemblies using high density SNP array.
Yali Hou, Derek M Bickhart, Miranda L Hvinden, Congjun Li, Jiuzhou Song, Didier A Boichard, Sébastien Fritz, André Eggen, Sue DeNise, George R Wiggans,[...]. BMC Genomics 2012
Yali Hou, Derek M Bickhart, Miranda L Hvinden, Congjun Li, Jiuzhou Song, Didier A Boichard, Sébastien Fritz, André Eggen, Sue DeNise, George R Wiggans,[...]. BMC Genomics 2012
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Origins and functional impact of copy number variation in the human genome.
Donald F Conrad, Dalila Pinto, Richard Redon, Lars Feuk, Omer Gokcumen, Yujun Zhang, Jan Aerts, T Daniel Andrews, Chris Barnes, Peter Campbell,[...]. Nature 2010
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The genome sequence of taurine cattle: a window to ruminant biology and evolution.
Christine G Elsik, Ross L Tellam, Kim C Worley, Richard A Gibbs, Donna M Muzny, George M Weinstock, David L Adelson, Evan E Eichler, Laura Elnitski, Roderic Guigó,[...]. Science 2009
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Mapping copy number variation by population-scale genome sequencing.
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Genome-wide detection of copy number variations using high-density SNP genotyping platforms in Holsteins.
Li Jiang, Jicai Jiang, Jie Yang, Xuan Liu, Jiying Wang, Haifei Wang, Xiangdong Ding, Jianfeng Liu, Qin Zhang. BMC Genomics 2013
Li Jiang, Jicai Jiang, Jie Yang, Xuan Liu, Jiying Wang, Haifei Wang, Xiangdong Ding, Jianfeng Liu, Qin Zhang. BMC Genomics 2013
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Copy number variation in human health, disease, and evolution.
Feng Zhang, Wenli Gu, Matthew E Hurles, James R Lupski. Annu Rev Genomics Hum Genet 2009
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The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.
Aaron McKenna, Matthew Hanna, Eric Banks, Andrey Sivachenko, Kristian Cibulskis, Andrew Kernytsky, Kiran Garimella, David Altshuler, Stacey Gabriel, Mark Daly,[...]. Genome Res 2010
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A snapshot of CNVs in the pig genome.
João Fadista, Marianne Nygaard, Lars-Erik Holm, Bo Thomsen, Christian Bendixen. PLoS One 2008
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Structural variation in the human genome.
Lars Feuk, Andrew R Carson, Stephen W Scherer. Nat Rev Genet 2006
Lars Feuk, Andrew R Carson, Stephen W Scherer. Nat Rev Genet 2006
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Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads.
Kai Ye, Marcel H Schulz, Quan Long, Rolf Apweiler, Zemin Ning. Bioinformatics 2009
Kai Ye, Marcel H Schulz, Quan Long, Rolf Apweiler, Zemin Ning. Bioinformatics 2009
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Copy number variation in the porcine genome inferred from a 60 k SNP BeadChip.
Yuliaxis Ramayo-Caldas, Anna Castelló, Romi N Pena, Estefania Alves, Anna Mercadé, Carla A Souza, Ana I Fernández, Miguel Perez-Enciso, Josep M Folch. BMC Genomics 2010
Yuliaxis Ramayo-Caldas, Anna Castelló, Romi N Pena, Estefania Alves, Anna Mercadé, Carla A Souza, Ana I Fernández, Miguel Perez-Enciso, Josep M Folch. BMC Genomics 2010
21
Analysis of copy loss and gain variations in Holstein cattle autosomes using BeadChip SNPs.
Eyal Seroussi, Giora Glick, Andrey Shirak, Emanuel Yakobson, Joel I Weller, Ephraim Ezra, Yoel Zeron. BMC Genomics 2010
Eyal Seroussi, Giora Glick, Andrey Shirak, Emanuel Yakobson, Joel I Weller, Ephraim Ezra, Yoel Zeron. BMC Genomics 2010
21
An initial comparative map of copy number variations in the goat (Capra hircus) genome.
Luca Fontanesi, Pier Luigi Martelli, Francesca Beretti, Valentina Riggio, Stefania Dall'Olio, Michela Colombo, Rita Casadio, Vincenzo Russo, Baldassare Portolano. BMC Genomics 2010
Luca Fontanesi, Pier Luigi Martelli, Francesca Beretti, Valentina Riggio, Stefania Dall'Olio, Michela Colombo, Rita Casadio, Vincenzo Russo, Baldassare Portolano. BMC Genomics 2010
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Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources.
Da Wei Huang, Brad T Sherman, Richard A Lempicki. Nat Protoc 2009
Da Wei Huang, Brad T Sherman, Richard A Lempicki. Nat Protoc 2009
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A first comparative map of copy number variations in the sheep genome.
L Fontanesi, F Beretti, P L Martelli, M Colombo, S Dall'olio, M Occidente, B Portolano, R Casadio, D Matassino, V Russo. Genomics 2011
L Fontanesi, F Beretti, P L Martelli, M Colombo, S Dall'olio, M Occidente, B Portolano, R Casadio, D Matassino, V Russo. Genomics 2011
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Development and characterization of a high density SNP genotyping assay for cattle.
Lakshmi K Matukumalli, Cynthia T Lawley, Robert D Schnabel, Jeremy F Taylor, Mark F Allan, Michael P Heaton, Jeff O'Connell, Stephen S Moore, Timothy P L Smith, Tad S Sonstegard,[...]. PLoS One 2009
Lakshmi K Matukumalli, Cynthia T Lawley, Robert D Schnabel, Jeremy F Taylor, Mark F Allan, Michael P Heaton, Jeff O'Connell, Stephen S Moore, Timothy P L Smith, Tad S Sonstegard,[...]. PLoS One 2009
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CNVnator: an approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing.
Alexej Abyzov, Alexander E Urban, Michael Snyder, Mark Gerstein. Genome Res 2011
Alexej Abyzov, Alexander E Urban, Michael Snyder, Mark Gerstein. Genome Res 2011
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A high-resolution map of segmental DNA copy number variation in the mouse genome.
Timothy A Graubert, Patrick Cahan, Deepa Edwin, Rebecca R Selzer, Todd A Richmond, Peggy S Eis, William D Shannon, Xia Li, Howard L McLeod, James M Cheverud,[...]. PLoS Genet 2007
Timothy A Graubert, Patrick Cahan, Deepa Edwin, Rebecca R Selzer, Todd A Richmond, Peggy S Eis, William D Shannon, Xia Li, Howard L McLeod, James M Cheverud,[...]. PLoS Genet 2007
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Comparing CNV detection methods for SNP arrays.
Laura Winchester, Christopher Yau, Jiannis Ragoussis. Brief Funct Genomic Proteomic 2009
Laura Winchester, Christopher Yau, Jiannis Ragoussis. Brief Funct Genomic Proteomic 2009
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Detection of large-scale variation in the human genome.
A John Iafrate, Lars Feuk, Miguel N Rivera, Marc L Listewnik, Patricia K Donahoe, Ying Qi, Stephen W Scherer, Charles Lee. Nat Genet 2004
A John Iafrate, Lars Feuk, Miguel N Rivera, Marc L Listewnik, Patricia K Donahoe, Ying Qi, Stephen W Scherer, Charles Lee. Nat Genet 2004
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PLINK: a tool set for whole-genome association and population-based linkage analyses.
Shaun Purcell, Benjamin Neale, Kathe Todd-Brown, Lori Thomas, Manuel A R Ferreira, David Bender, Julian Maller, Pamela Sklar, Paul I W de Bakker, Mark J Daly,[...]. Am J Hum Genet 2007
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Large-scale copy number polymorphism in the human genome.
Jonathan Sebat, B Lakshmi, Jennifer Troge, Joan Alexander, Janet Young, Pär Lundin, Susanne Månér, Hillary Massa, Megan Walker, Maoyen Chi,[...]. Science 2004
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Whole genome sequencing of a single Bos taurus animal for single nucleotide polymorphism discovery.
Sebastian H Eck, Anna Benet-Pagès, Krzysztof Flisikowski, Thomas Meitinger, Ruedi Fries, Tim M Strom. Genome Biol 2009
Sebastian H Eck, Anna Benet-Pagès, Krzysztof Flisikowski, Thomas Meitinger, Ruedi Fries, Tim M Strom. Genome Biol 2009
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Genome-wide copy number variation in Hanwoo, Black Angus, and Holstein cattle.
Jung-Woo Choi, Kyung-Tai Lee, Xiaoping Liao, Paul Stothard, Hyeon-Seung An, Sungmin Ahn, Seunghwan Lee, Sung-Yeoun Lee, Stephen S Moore, Tae-Hun Kim. Mamm Genome 2013
Jung-Woo Choi, Kyung-Tai Lee, Xiaoping Liao, Paul Stothard, Hyeon-Seung An, Sungmin Ahn, Seunghwan Lee, Sung-Yeoun Lee, Stephen S Moore, Tae-Hun Kim. Mamm Genome 2013
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Analysis of copy number variations in the sheep genome using 50K SNP BeadChip array.
Jiasen Liu, Li Zhang, Lingyang Xu, Hangxing Ren, Jian Lu, Xiaoning Zhang, Shifang Zhang, Xinlei Zhou, Caihong Wei, Fuping Zhao,[...]. BMC Genomics 2013
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Copy number variation in intron 1 of SOX5 causes the Pea-comb phenotype in chickens.
Dominic Wright, Henrik Boije, Jennifer R S Meadows, Bertrand Bed'hom, David Gourichon, Agathe Vieaud, Michèle Tixier-Boichard, Carl-Johan Rubin, Freyja Imsland, Finn Hallböök,[...]. PLoS Genet 2009
Dominic Wright, Henrik Boije, Jennifer R S Meadows, Bertrand Bed'hom, David Gourichon, Agathe Vieaud, Michèle Tixier-Boichard, Carl-Johan Rubin, Freyja Imsland, Finn Hallböök,[...]. PLoS Genet 2009
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Relative impact of nucleotide and copy number variation on gene expression phenotypes.
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Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds.
Richard A Gibbs, Jeremy F Taylor, Curtis P Van Tassell, William Barendse, Kellye A Eversole, Clare A Gill, Ronnie D Green, Debora L Hamernik, Steven M Kappes, Sigbjørn Lien,[...]. Science 2009
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Massive screening of copy number population-scale variation in Bos taurus genome.
Francesco Cicconardi, Giovanni Chillemi, Anna Tramontano, Cinzia Marchitelli, Alessio Valentini, Paolo Ajmone-Marsan, Alessandro Nardone. BMC Genomics 2013
Francesco Cicconardi, Giovanni Chillemi, Anna Tramontano, Cinzia Marchitelli, Alessio Valentini, Paolo Ajmone-Marsan, Alessandro Nardone. BMC Genomics 2013
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Circos: an information aesthetic for comparative genomics.
Martin Krzywinski, Jacqueline Schein, Inanç Birol, Joseph Connors, Randy Gascoyne, Doug Horsman, Steven J Jones, Marco A Marra. Genome Res 2009
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An initial map of chromosomal segmental copy number variations in the chicken.
Xiaofei Wang, Samuel Nahashon, Tromondae K Feaster, Ann Bohannon-Stewart, Nathaniel Adefope. BMC Genomics 2010
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Whole-genome resequencing of two elite sires for the detection of haplotypes under selection in dairy cattle.
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Genome-Wide Study of Structural Variants in Bovine Holstein, Montbéliarde and Normande Dairy Breeds.
Mekki Boussaha, Diane Esquerré, Johanna Barbieri, Anis Djari, Alain Pinton, Rabia Letaief, Gérald Salin, Frédéric Escudié, Alain Roulet, Sébastien Fritz,[...]. PLoS One 2015
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BreakDancer: an algorithm for high-resolution mapping of genomic structural variation.
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Natural selection shapes genome-wide patterns of copy-number polymorphism in Drosophila melanogaster.
J J Emerson, Margarida Cardoso-Moreira, Justin O Borevitz, Manyuan Long. Science 2008
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Analysis of copy number variants in the cattle genome.
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Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.