A citation-based method for searching scientific literature

Eugene Oh, Annemarie H Becker, Arzu Sandikci, Damon Huber, Rachna Chaba, Felix Gloge, Robert J Nichols, Athanasios Typas, Carol A Gross, Günter Kramer, Jonathan S Weissman, Bernd Bukau. Cell 2011
Times Cited: 292







List of co-cited articles
1340 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling.
Nicholas T Ingolia, Sina Ghaemmaghami, John R S Newman, Jonathan S Weissman. Science 2009
49

Quantifying absolute protein synthesis rates reveals principles underlying allocation of cellular resources.
Gene-Wei Li, David Burkhardt, Carol Gross, Jonathan S Weissman. Cell 2014
705
30

The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments.
Nicholas T Ingolia, Gloria A Brar, Silvia Rouskin, Anna M McGeachy, Jonathan S Weissman. Nat Protoc 2012
653
25



Global profiling of SRP interaction with nascent polypeptides.
Daniela Schibich, Felix Gloge, Ina Pöhner, Patrik Björkholm, Rebecca C Wade, Gunnar von Heijne, Bernd Bukau, Günter Kramer. Nature 2016
80
26



Structural basis for protein antiaggregation activity of the trigger factor chaperone.
Tomohide Saio, Xiao Guan, Paolo Rossi, Anastassios Economou, Charalampos G Kalodimos. Science 2014
171
18

High-precision analysis of translational pausing by ribosome profiling in bacteria lacking EFP.
Christopher J Woolstenhulme, Nicholas R Guydosh, Rachel Green, Allen R Buskirk. Cell Rep 2015
138
18

Trigger factor and DnaK cooperate in folding of newly synthesized proteins.
E Deuerling, A Schulze-Specking, T Tomoyasu, A Mogk, B Bukau. Nature 1999
363
17

Clarifying the Translational Pausing Landscape in Bacteria by Ribosome Profiling.
Fuad Mohammad, Christopher J Woolstenhulme, Rachel Green, Allen R Buskirk. Cell Rep 2016
111
17

Trigger factor in complex with the ribosome forms a molecular cradle for nascent proteins.
Lars Ferbitz, Timm Maier, Holger Patzelt, Bernd Bukau, Elke Deuerling, Nenad Ban. Nature 2004
273
16

Improved Ribosome-Footprint and mRNA Measurements Provide Insights into Dynamics and Regulation of Yeast Translation.
David E Weinberg, Premal Shah, Stephen W Eichhorn, Jeffrey A Hussmann, Joshua B Plotkin, David P Bartel. Cell Rep 2016
205
15

Transcriptome-wide measurement of translation by ribosome profiling.
Nicholas J McGlincy, Nicholas T Ingolia. Methods 2017
171
15

Interplay between trigger factor and other protein biogenesis factors on the ribosome.
Thomas Bornemann, Wolf Holtkamp, Wolfgang Wintermeyer. Nat Commun 2014
40
37

Cotranslational assembly of protein complexes in eukaryotes revealed by ribosome profiling.
Ayala Shiber, Kristina Döring, Ulrike Friedrich, Kevin Klann, Dorina Merker, Mostafa Zedan, Frank Tippmann, Günter Kramer, Bernd Bukau. Nature 2018
130
15

Ribonuclease selection for ribosome profiling.
Maxim V Gerashchenko, Vadim N Gladyshev. Nucleic Acids Res 2017
71
19

Targeting and plasticity of mitochondrial proteins revealed by proximity-specific ribosome profiling.
Christopher C Williams, Calvin H Jan, Jonathan S Weissman. Science 2014
205
14

Understanding Biases in Ribosome Profiling Experiments Reveals Signatures of Translation Dynamics in Yeast.
Jeffrey A Hussmann, Stephanie Patchett, Arlen Johnson, Sara Sawyer, William H Press. PLoS Genet 2015
139
14

In vivo aspects of protein folding and quality control.
David Balchin, Manajit Hayer-Hartl, F Ulrich Hartl. Science 2016
639
14

The ribosome as a platform for co-translational processing, folding and targeting of newly synthesized proteins.
Günter Kramer, Daniel Boehringer, Nenad Ban, Bernd Bukau. Nat Struct Mol Biol 2009
323
14

Polypeptide flux through bacterial Hsp70: DnaK cooperates with trigger factor in chaperoning nascent chains.
S A Teter, W A Houry, D Ang, T Tradler, D Rockabrand, G Fischer, P Blum, C Georgopoulos, F U Hartl. Cell 1999
306
13

Translation inhibitors cause abnormalities in ribosome profiling experiments.
Maxim V Gerashchenko, Vadim N Gladyshev. Nucleic Acids Res 2014
171
13

Molecular chaperones in protein folding and proteostasis.
F Ulrich Hartl, Andreas Bracher, Manajit Hayer-Hartl. Nature 2011
13

Profiling Ssb-Nascent Chain Interactions Reveals Principles of Hsp70-Assisted Folding.
Kristina Döring, Nabeel Ahmed, Trine Riemer, Harsha Garadi Suresh, Yevhen Vainshtein, Markus Habich, Jan Riemer, Matthias P Mayer, Edward P O'Brien, Günter Kramer,[...]. Cell 2017
76
17


Identifying Small Proteins by Ribosome Profiling with Stalled Initiation Complexes.
Jeremy Weaver, Fuad Mohammad, Allen R Buskirk, Gisela Storz. mBio 2019
65
20

Concerted action of the ribosome and the associated chaperone trigger factor confines nascent polypeptide folding.
Anja Hoffmann, Annemarie H Becker, Beate Zachmann-Brand, Elke Deuerling, Bernd Bukau, Günter Kramer. Mol Cell 2012
73
16

Real-time observation of trigger factor function on translating ribosomes.
Christian M Kaiser, Hung-Chun Chang, Vishwas R Agashe, Sathish K Lakshmipathy, Stephanie A Etchells, Manajit Hayer-Hartl, F Ulrich Hartl, José M Barral. Nature 2006
161
12

L23 protein functions as a chaperone docking site on the ribosome.
Günter Kramer, Thomas Rauch, Wolfgang Rist, Sonja Vorderwülbecke, Holger Patzelt, Agnes Schulze-Specking, Nenad Ban, Elke Deuerling, Bernd Bukau. Nature 2002
246
12

Dom34 rescues ribosomes in 3' untranslated regions.
Nicholas R Guydosh, Rachel Green. Cell 2014
229
12

Positively charged residues are the major determinants of ribosomal velocity.
Catherine A Charneski, Laurence D Hurst. PLoS Biol 2013
180
12

Local slowdown of translation by nonoptimal codons promotes nascent-chain recognition by SRP in vivo.
Sebastian Pechmann, Justin W Chartron, Judith Frydman. Nat Struct Mol Biol 2014
135
12

SecA Cotranslationally Interacts with Nascent Substrate Proteins In Vivo.
Damon Huber, Mohammed Jamshad, Ruby Hanmer, Daniela Schibich, Kristina Döring, Isabella Marcomini, Günter Kramer, Bernd Bukau. J Bacteriol 2016
38
31

Comprehensive identification of translation start sites by tetracycline-inhibited ribosome profiling.
Kenji Nakahigashi, Yuki Takai, Michiko Kimura, Nozomi Abe, Toru Nakayashiki, Yuh Shiwa, Hirofumi Yoshikawa, Barry L Wanner, Yasushi Ishihama, Hirotada Mori. DNA Res 2016
42
28

Retapamulin-Assisted Ribosome Profiling Reveals the Alternative Bacterial Proteome.
Sezen Meydan, James Marks, Dorota Klepacki, Virag Sharma, Pavel V Baranov, Andrew E Firth, Tōnu Margus, Amira Kefi, Nora Vázquez-Laslop, Alexander S Mankin. Mol Cell 2019
55
21

Cotranslational Protein Folding inside the Ribosome Exit Tunnel.
Ola B Nilsson, Rickard Hedman, Jacopo Marino, Stephan Wickles, Lukas Bischoff, Magnus Johansson, Annika Müller-Lucks, Fabio Trovato, Joseph D Puglisi, Edward P O'Brien,[...]. Cell Rep 2015
146
11

Transient ribosomal attenuation coordinates protein synthesis and co-translational folding.
Gong Zhang, Magdalena Hubalewska, Zoya Ignatova. Nat Struct Mol Biol 2009
384
11


DnaK functions as a central hub in the E. coli chaperone network.
Giulia Calloni, Taotao Chen, Sonya M Schermann, Hung-Chun Chang, Pierre Genevaux, Federico Agostini, Gian Gaetano Tartaglia, Manajit Hayer-Hartl, F Ulrich Hartl. Cell Rep 2012
211
11

Distinct stages of the translation elongation cycle revealed by sequencing ribosome-protected mRNA fragments.
Liana F Lareau, Dustin H Hite, Gregory J Hogan, Patrick O Brown. Elife 2014
173
11

A ribosome profiling study of mRNA cleavage by the endonuclease RelE.
Jae-Yeon Hwang, Allen R Buskirk. Nucleic Acids Res 2017
26
42

Dynamics of ribosome scanning and recycling revealed by translation complex profiling.
Stuart K Archer, Nikolay E Shirokikh, Traude H Beilharz, Thomas Preiss. Nature 2016
115
11

Context-specific inhibition of translation by ribosomal antibiotics targeting the peptidyl transferase center.
James Marks, Krishna Kannan, Emily J Roncase, Dorota Klepacki, Amira Kefi, Cédric Orelle, Nora Vázquez-Laslop, Alexander S Mankin. Proc Natl Acad Sci U S A 2016
68
16

Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution.
Sooncheol Lee, Botao Liu, Soohyun Lee, Sheng-Xiong Huang, Ben Shen, Shu-Bing Qian. Proc Natl Acad Sci U S A 2012
365
11

Protein export through the bacterial Sec pathway.
Alexandra Tsirigotaki, Jozefien De Geyter, Nikolina Šoštaric, Anastassios Economou, Spyridoula Karamanou. Nat Rev Microbiol 2017
190
11

Molecular mechanism and structure of Trigger Factor bound to the translating ribosome.
Frieder Merz, Daniel Boehringer, Christiane Schaffitzel, Steffen Preissler, Anja Hoffmann, Timm Maier, Anna Rutkowska, Jasmin Lozza, Nenad Ban, Bernd Bukau,[...]. EMBO J 2008
108
11

Mechanisms of Cotranslational Maturation of Newly Synthesized Proteins.
Günter Kramer, Ayala Shiber, Bernd Bukau. Annu Rev Biochem 2019
68
16

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
11


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.