Selective ribosome profiling reveals the cotranslational chaperone action of trigger factor in vivo.
Eugene Oh, Annemarie H Becker, Arzu Sandikci, Damon Huber, Rachna Chaba, Felix Gloge, Robert J Nichols, Athanasios Typas, Carol A Gross, Günter Kramer, Jonathan S Weissman, Bernd Bukau. Cell 2011
Times Cited: 292
Times Cited: 292
Times Cited
Times Co-cited
Similarity
Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling.
Nicholas T Ingolia, Sina Ghaemmaghami, John R S Newman, Jonathan S Weissman. Science 2009
Nicholas T Ingolia, Sina Ghaemmaghami, John R S Newman, Jonathan S Weissman. Science 2009
49
Quantifying absolute protein synthesis rates reveals principles underlying allocation of cellular resources.
Gene-Wei Li, David Burkhardt, Carol Gross, Jonathan S Weissman. Cell 2014
Gene-Wei Li, David Burkhardt, Carol Gross, Jonathan S Weissman. Cell 2014
30
The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments.
Nicholas T Ingolia, Gloria A Brar, Silvia Rouskin, Anna M McGeachy, Jonathan S Weissman. Nat Protoc 2012
Nicholas T Ingolia, Gloria A Brar, Silvia Rouskin, Anna M McGeachy, Jonathan S Weissman. Nat Protoc 2012
25
Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes.
Nicholas T Ingolia, Liana F Lareau, Jonathan S Weissman. Cell 2011
Nicholas T Ingolia, Liana F Lareau, Jonathan S Weissman. Cell 2011
23
A systematically-revised ribosome profiling method for bacteria reveals pauses at single-codon resolution.
Fuad Mohammad, Rachel Green, Allen R Buskirk. Elife 2019
Fuad Mohammad, Rachel Green, Allen R Buskirk. Elife 2019
31
Global profiling of SRP interaction with nascent polypeptides.
Daniela Schibich, Felix Gloge, Ina Pöhner, Patrik Björkholm, Rebecca C Wade, Gunnar von Heijne, Bernd Bukau, Günter Kramer. Nature 2016
Daniela Schibich, Felix Gloge, Ina Pöhner, Patrik Björkholm, Rebecca C Wade, Gunnar von Heijne, Bernd Bukau, Günter Kramer. Nature 2016
26
Selective ribosome profiling as a tool for studying the interaction of chaperones and targeting factors with nascent polypeptide chains and ribosomes.
Annemarie H Becker, Eugene Oh, Jonathan S Weissman, Günter Kramer, Bernd Bukau. Nat Protoc 2013
Annemarie H Becker, Eugene Oh, Jonathan S Weissman, Günter Kramer, Bernd Bukau. Nat Protoc 2013
33
The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria.
Gene-Wei Li, Eugene Oh, Jonathan S Weissman. Nature 2012
Gene-Wei Li, Eugene Oh, Jonathan S Weissman. Nature 2012
19
Structural basis for protein antiaggregation activity of the trigger factor chaperone.
Tomohide Saio, Xiao Guan, Paolo Rossi, Anastassios Economou, Charalampos G Kalodimos. Science 2014
Tomohide Saio, Xiao Guan, Paolo Rossi, Anastassios Economou, Charalampos G Kalodimos. Science 2014
18
High-precision analysis of translational pausing by ribosome profiling in bacteria lacking EFP.
Christopher J Woolstenhulme, Nicholas R Guydosh, Rachel Green, Allen R Buskirk. Cell Rep 2015
Christopher J Woolstenhulme, Nicholas R Guydosh, Rachel Green, Allen R Buskirk. Cell Rep 2015
18
Trigger factor and DnaK cooperate in folding of newly synthesized proteins.
E Deuerling, A Schulze-Specking, T Tomoyasu, A Mogk, B Bukau. Nature 1999
E Deuerling, A Schulze-Specking, T Tomoyasu, A Mogk, B Bukau. Nature 1999
17
Clarifying the Translational Pausing Landscape in Bacteria by Ribosome Profiling.
Fuad Mohammad, Christopher J Woolstenhulme, Rachel Green, Allen R Buskirk. Cell Rep 2016
Fuad Mohammad, Christopher J Woolstenhulme, Rachel Green, Allen R Buskirk. Cell Rep 2016
17
Trigger factor in complex with the ribosome forms a molecular cradle for nascent proteins.
Lars Ferbitz, Timm Maier, Holger Patzelt, Bernd Bukau, Elke Deuerling, Nenad Ban. Nature 2004
Lars Ferbitz, Timm Maier, Holger Patzelt, Bernd Bukau, Elke Deuerling, Nenad Ban. Nature 2004
16
Improved Ribosome-Footprint and mRNA Measurements Provide Insights into Dynamics and Regulation of Yeast Translation.
David E Weinberg, Premal Shah, Stephen W Eichhorn, Jeffrey A Hussmann, Joshua B Plotkin, David P Bartel. Cell Rep 2016
David E Weinberg, Premal Shah, Stephen W Eichhorn, Jeffrey A Hussmann, Joshua B Plotkin, David P Bartel. Cell Rep 2016
15
Transcriptome-wide measurement of translation by ribosome profiling.
Nicholas J McGlincy, Nicholas T Ingolia. Methods 2017
Nicholas J McGlincy, Nicholas T Ingolia. Methods 2017
15
Interplay between trigger factor and other protein biogenesis factors on the ribosome.
Thomas Bornemann, Wolf Holtkamp, Wolfgang Wintermeyer. Nat Commun 2014
Thomas Bornemann, Wolf Holtkamp, Wolfgang Wintermeyer. Nat Commun 2014
37
Cotranslational assembly of protein complexes in eukaryotes revealed by ribosome profiling.
Ayala Shiber, Kristina Döring, Ulrike Friedrich, Kevin Klann, Dorina Merker, Mostafa Zedan, Frank Tippmann, Günter Kramer, Bernd Bukau. Nature 2018
Ayala Shiber, Kristina Döring, Ulrike Friedrich, Kevin Klann, Dorina Merker, Mostafa Zedan, Frank Tippmann, Günter Kramer, Bernd Bukau. Nature 2018
15
Ribonuclease selection for ribosome profiling.
Maxim V Gerashchenko, Vadim N Gladyshev. Nucleic Acids Res 2017
Maxim V Gerashchenko, Vadim N Gladyshev. Nucleic Acids Res 2017
19
Targeting and plasticity of mitochondrial proteins revealed by proximity-specific ribosome profiling.
Christopher C Williams, Calvin H Jan, Jonathan S Weissman. Science 2014
Christopher C Williams, Calvin H Jan, Jonathan S Weissman. Science 2014
14
Understanding Biases in Ribosome Profiling Experiments Reveals Signatures of Translation Dynamics in Yeast.
Jeffrey A Hussmann, Stephanie Patchett, Arlen Johnson, Sara Sawyer, William H Press. PLoS Genet 2015
Jeffrey A Hussmann, Stephanie Patchett, Arlen Johnson, Sara Sawyer, William H Press. PLoS Genet 2015
14
In vivo aspects of protein folding and quality control.
David Balchin, Manajit Hayer-Hartl, F Ulrich Hartl. Science 2016
David Balchin, Manajit Hayer-Hartl, F Ulrich Hartl. Science 2016
14
The ribosome as a platform for co-translational processing, folding and targeting of newly synthesized proteins.
Günter Kramer, Daniel Boehringer, Nenad Ban, Bernd Bukau. Nat Struct Mol Biol 2009
Günter Kramer, Daniel Boehringer, Nenad Ban, Bernd Bukau. Nat Struct Mol Biol 2009
14
Polypeptide flux through bacterial Hsp70: DnaK cooperates with trigger factor in chaperoning nascent chains.
S A Teter, W A Houry, D Ang, T Tradler, D Rockabrand, G Fischer, P Blum, C Georgopoulos, F U Hartl. Cell 1999
S A Teter, W A Houry, D Ang, T Tradler, D Rockabrand, G Fischer, P Blum, C Georgopoulos, F U Hartl. Cell 1999
13
Translation inhibitors cause abnormalities in ribosome profiling experiments.
Maxim V Gerashchenko, Vadim N Gladyshev. Nucleic Acids Res 2014
Maxim V Gerashchenko, Vadim N Gladyshev. Nucleic Acids Res 2014
13
Molecular chaperones in protein folding and proteostasis.
F Ulrich Hartl, Andreas Bracher, Manajit Hayer-Hartl. Nature 2011
F Ulrich Hartl, Andreas Bracher, Manajit Hayer-Hartl. Nature 2011
13
Profiling Ssb-Nascent Chain Interactions Reveals Principles of Hsp70-Assisted Folding.
Kristina Döring, Nabeel Ahmed, Trine Riemer, Harsha Garadi Suresh, Yevhen Vainshtein, Markus Habich, Jan Riemer, Matthias P Mayer, Edward P O'Brien, Günter Kramer,[...]. Cell 2017
Kristina Döring, Nabeel Ahmed, Trine Riemer, Harsha Garadi Suresh, Yevhen Vainshtein, Markus Habich, Jan Riemer, Matthias P Mayer, Edward P O'Brien, Günter Kramer,[...]. Cell 2017
17
High-Resolution Ribosome Profiling Defines Discrete Ribosome Elongation States and Translational Regulation during Cellular Stress.
Colin Chih-Chien Wu, Boris Zinshteyn, Karen A Wehner, Rachel Green. Mol Cell 2019
Colin Chih-Chien Wu, Boris Zinshteyn, Karen A Wehner, Rachel Green. Mol Cell 2019
13
Identifying Small Proteins by Ribosome Profiling with Stalled Initiation Complexes.
Jeremy Weaver, Fuad Mohammad, Allen R Buskirk, Gisela Storz. mBio 2019
Jeremy Weaver, Fuad Mohammad, Allen R Buskirk, Gisela Storz. mBio 2019
20
Concerted action of the ribosome and the associated chaperone trigger factor confines nascent polypeptide folding.
Anja Hoffmann, Annemarie H Becker, Beate Zachmann-Brand, Elke Deuerling, Bernd Bukau, Günter Kramer. Mol Cell 2012
Anja Hoffmann, Annemarie H Becker, Beate Zachmann-Brand, Elke Deuerling, Bernd Bukau, Günter Kramer. Mol Cell 2012
16
Real-time observation of trigger factor function on translating ribosomes.
Christian M Kaiser, Hung-Chun Chang, Vishwas R Agashe, Sathish K Lakshmipathy, Stephanie A Etchells, Manajit Hayer-Hartl, F Ulrich Hartl, José M Barral. Nature 2006
Christian M Kaiser, Hung-Chun Chang, Vishwas R Agashe, Sathish K Lakshmipathy, Stephanie A Etchells, Manajit Hayer-Hartl, F Ulrich Hartl, José M Barral. Nature 2006
12
L23 protein functions as a chaperone docking site on the ribosome.
Günter Kramer, Thomas Rauch, Wolfgang Rist, Sonja Vorderwülbecke, Holger Patzelt, Agnes Schulze-Specking, Nenad Ban, Elke Deuerling, Bernd Bukau. Nature 2002
Günter Kramer, Thomas Rauch, Wolfgang Rist, Sonja Vorderwülbecke, Holger Patzelt, Agnes Schulze-Specking, Nenad Ban, Elke Deuerling, Bernd Bukau. Nature 2002
12
12
Positively charged residues are the major determinants of ribosomal velocity.
Catherine A Charneski, Laurence D Hurst. PLoS Biol 2013
Catherine A Charneski, Laurence D Hurst. PLoS Biol 2013
12
Local slowdown of translation by nonoptimal codons promotes nascent-chain recognition by SRP in vivo.
Sebastian Pechmann, Justin W Chartron, Judith Frydman. Nat Struct Mol Biol 2014
Sebastian Pechmann, Justin W Chartron, Judith Frydman. Nat Struct Mol Biol 2014
12
SecA Cotranslationally Interacts with Nascent Substrate Proteins In Vivo.
Damon Huber, Mohammed Jamshad, Ruby Hanmer, Daniela Schibich, Kristina Döring, Isabella Marcomini, Günter Kramer, Bernd Bukau. J Bacteriol 2016
Damon Huber, Mohammed Jamshad, Ruby Hanmer, Daniela Schibich, Kristina Döring, Isabella Marcomini, Günter Kramer, Bernd Bukau. J Bacteriol 2016
31
Comprehensive identification of translation start sites by tetracycline-inhibited ribosome profiling.
Kenji Nakahigashi, Yuki Takai, Michiko Kimura, Nozomi Abe, Toru Nakayashiki, Yuh Shiwa, Hirofumi Yoshikawa, Barry L Wanner, Yasushi Ishihama, Hirotada Mori. DNA Res 2016
Kenji Nakahigashi, Yuki Takai, Michiko Kimura, Nozomi Abe, Toru Nakayashiki, Yuh Shiwa, Hirofumi Yoshikawa, Barry L Wanner, Yasushi Ishihama, Hirotada Mori. DNA Res 2016
28
Retapamulin-Assisted Ribosome Profiling Reveals the Alternative Bacterial Proteome.
Sezen Meydan, James Marks, Dorota Klepacki, Virag Sharma, Pavel V Baranov, Andrew E Firth, Tōnu Margus, Amira Kefi, Nora Vázquez-Laslop, Alexander S Mankin. Mol Cell 2019
Sezen Meydan, James Marks, Dorota Klepacki, Virag Sharma, Pavel V Baranov, Andrew E Firth, Tōnu Margus, Amira Kefi, Nora Vázquez-Laslop, Alexander S Mankin. Mol Cell 2019
21
Cotranslational Protein Folding inside the Ribosome Exit Tunnel.
Ola B Nilsson, Rickard Hedman, Jacopo Marino, Stephan Wickles, Lukas Bischoff, Magnus Johansson, Annika Müller-Lucks, Fabio Trovato, Joseph D Puglisi, Edward P O'Brien,[...]. Cell Rep 2015
Ola B Nilsson, Rickard Hedman, Jacopo Marino, Stephan Wickles, Lukas Bischoff, Magnus Johansson, Annika Müller-Lucks, Fabio Trovato, Joseph D Puglisi, Edward P O'Brien,[...]. Cell Rep 2015
11
Transient ribosomal attenuation coordinates protein synthesis and co-translational folding.
Gong Zhang, Magdalena Hubalewska, Zoya Ignatova. Nat Struct Mol Biol 2009
Gong Zhang, Magdalena Hubalewska, Zoya Ignatova. Nat Struct Mol Biol 2009
11
Optimization of Codon Translation Rates via tRNA Modifications Maintains Proteome Integrity.
Danny D Nedialkova, Sebastian A Leidel. Cell 2015
Danny D Nedialkova, Sebastian A Leidel. Cell 2015
11
DnaK functions as a central hub in the E. coli chaperone network.
Giulia Calloni, Taotao Chen, Sonya M Schermann, Hung-Chun Chang, Pierre Genevaux, Federico Agostini, Gian Gaetano Tartaglia, Manajit Hayer-Hartl, F Ulrich Hartl. Cell Rep 2012
Giulia Calloni, Taotao Chen, Sonya M Schermann, Hung-Chun Chang, Pierre Genevaux, Federico Agostini, Gian Gaetano Tartaglia, Manajit Hayer-Hartl, F Ulrich Hartl. Cell Rep 2012
11
Distinct stages of the translation elongation cycle revealed by sequencing ribosome-protected mRNA fragments.
Liana F Lareau, Dustin H Hite, Gregory J Hogan, Patrick O Brown. Elife 2014
Liana F Lareau, Dustin H Hite, Gregory J Hogan, Patrick O Brown. Elife 2014
11
A ribosome profiling study of mRNA cleavage by the endonuclease RelE.
Jae-Yeon Hwang, Allen R Buskirk. Nucleic Acids Res 2017
Jae-Yeon Hwang, Allen R Buskirk. Nucleic Acids Res 2017
42
Dynamics of ribosome scanning and recycling revealed by translation complex profiling.
Stuart K Archer, Nikolay E Shirokikh, Traude H Beilharz, Thomas Preiss. Nature 2016
Stuart K Archer, Nikolay E Shirokikh, Traude H Beilharz, Thomas Preiss. Nature 2016
11
Context-specific inhibition of translation by ribosomal antibiotics targeting the peptidyl transferase center.
James Marks, Krishna Kannan, Emily J Roncase, Dorota Klepacki, Amira Kefi, Cédric Orelle, Nora Vázquez-Laslop, Alexander S Mankin. Proc Natl Acad Sci U S A 2016
James Marks, Krishna Kannan, Emily J Roncase, Dorota Klepacki, Amira Kefi, Cédric Orelle, Nora Vázquez-Laslop, Alexander S Mankin. Proc Natl Acad Sci U S A 2016
16
Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution.
Sooncheol Lee, Botao Liu, Soohyun Lee, Sheng-Xiong Huang, Ben Shen, Shu-Bing Qian. Proc Natl Acad Sci U S A 2012
Sooncheol Lee, Botao Liu, Soohyun Lee, Sheng-Xiong Huang, Ben Shen, Shu-Bing Qian. Proc Natl Acad Sci U S A 2012
11
Protein export through the bacterial Sec pathway.
Alexandra Tsirigotaki, Jozefien De Geyter, Nikolina Šoštaric, Anastassios Economou, Spyridoula Karamanou. Nat Rev Microbiol 2017
Alexandra Tsirigotaki, Jozefien De Geyter, Nikolina Šoštaric, Anastassios Economou, Spyridoula Karamanou. Nat Rev Microbiol 2017
11
Molecular mechanism and structure of Trigger Factor bound to the translating ribosome.
Frieder Merz, Daniel Boehringer, Christiane Schaffitzel, Steffen Preissler, Anja Hoffmann, Timm Maier, Anna Rutkowska, Jasmin Lozza, Nenad Ban, Bernd Bukau,[...]. EMBO J 2008
Frieder Merz, Daniel Boehringer, Christiane Schaffitzel, Steffen Preissler, Anja Hoffmann, Timm Maier, Anna Rutkowska, Jasmin Lozza, Nenad Ban, Bernd Bukau,[...]. EMBO J 2008
11
Mechanisms of Cotranslational Maturation of Newly Synthesized Proteins.
Günter Kramer, Ayala Shiber, Bernd Bukau. Annu Rev Biochem 2019
Günter Kramer, Ayala Shiber, Bernd Bukau. Annu Rev Biochem 2019
16
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