A citation-based method for searching scientific literature

Kenichi Hitomi, Andrew S Arvai, Junpei Yamamoto, Chiharu Hitomi, Mika Teranishi, Tokuhisa Hirouchi, Kazuo Yamamoto, Shigenori Iwai, John A Tainer, Jun Hidema, Elizabeth D Getzoff. J Biol Chem 2012
Times Cited: 27







List of co-cited articles
378 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Crystal structures of an archaeal class II DNA photolyase and its complex with UV-damaged duplex DNA.
Stephan Kiontke, Yann Geisselbrecht, Richard Pokorny, Thomas Carell, Alfred Batschauer, Lars-Oliver Essen. EMBO J 2011
65
62


The cryptochromes: blue light photoreceptors in plants and animals.
Inês Chaves, Richard Pokorny, Martin Byrdin, Nathalie Hoang, Thorsten Ritz, Klaus Brettel, Lars-Oliver Essen, Gijsbertus T J van der Horst, Alfred Batschauer, Margaret Ahmad. Annu Rev Plant Biol 2011
490
51

Recognition and repair of UV lesions in loop structures of duplex DNA by DASH-type cryptochrome.
Richard Pokorny, Tobias Klar, Ulrich Hennecke, Thomas Carell, Alfred Batschauer, Lars-Oliver Essen. Proc Natl Acad Sci U S A 2008
127
51

Functional motifs in the (6-4) photolyase crystal structure make a comparative framework for DNA repair photolyases and clock cryptochromes.
Kenichi Hitomi, Luciano DiTacchio, Andrew S Arvai, Junpei Yamamoto, Sang-Tae Kim, Takeshi Todo, John A Tainer, Shigenori Iwai, Satchidananda Panda, Elizabeth D Getzoff. Proc Natl Acad Sci U S A 2009
92
44

Crystal structure and mechanism of a DNA (6-4) photolyase.
Melanie J Maul, Thomas R M Barends, Andreas F Glas, Max J Cryle, Tatiana Domratcheva, Sabine Schneider, Ilme Schlichting, Thomas Carell. Angew Chem Int Ed Engl 2008
139
44

Dynamics and mechanism of cyclobutane pyrimidine dimer repair by DNA photolyase.
Zheyun Liu, Chuang Tan, Xunmin Guo, Ya-Ting Kao, Jiang Li, Lijuan Wang, Aziz Sancar, Dongping Zhong. Proc Natl Acad Sci U S A 2011
111
44


Kinetics of cyclobutane thymine dimer splitting by DNA photolyase directly monitored in the UV.
Viruthachalam Thiagarajan, Martin Byrdin, André P M Eker, Pavel Müller, Klaus Brettel. Proc Natl Acad Sci U S A 2011
52
40

Reaction mechanisms of DNA photolyase.
Klaus Brettel, Martin Byrdin. Curr Opin Struct Biol 2010
111
40

Crystal structure of a photolyase bound to a CPD-like DNA lesion after in situ repair.
Alexandra Mees, Tobias Klar, Petra Gnau, Ulrich Hennecke, Andre P M Eker, Thomas Carell, Lars-Oliver Essen. Science 2004
268
40

Crystal structure of DNA photolyase from Escherichia coli.
H W Park, S T Kim, A Sancar, J Deisenhofer. Science 1995
396
37

Identification of a new cryptochrome class. Structure, function, and evolution.
Ronald Brudler, Kenichi Hitomi, Hiromi Daiyasu, Hiroyuki Toh, Ken-ichi Kucho, Masahiro Ishiura, Minoru Kanehisa, Victoria A Roberts, Takeshi Todo, John A Tainer,[...]. Mol Cell 2003
228
37

Crystal structure of cryptochrome 3 from Arabidopsis thaliana and its implications for photolyase activity.
Yihua Huang, Richard Baxter, Barbara S Smith, Carrie L Partch, Christopher L Colbert, Johann Deisenhofer. Proc Natl Acad Sci U S A 2006
93
37

Intraprotein radical transfer during photoactivation of DNA photolyase.
C Aubert, M H Vos, P Mathis, A P Eker, K Brettel. Nature 2000
318
33

Quantum yield measurements of short-lived photoactivation intermediates in DNA photolyase: toward a detailed understanding of the triple tryptophan electron transfer chain.
Martin Byrdin, Andras Lukacs, Viruthachalam Thiagarajan, André P M Eker, Klaus Brettel, Marten H Vos. J Phys Chem A 2010
49
33

Evolution of mutation rates: phylogenomic analysis of the photolyase/cryptochrome family.
José Ignacio Lucas-Lledó, Michael Lynch. Mol Biol Evol 2009
56
33

Structural and evolutionary aspects of antenna chromophore usage by class II photolyases.
Stephan Kiontke, Petra Gnau, Reinhard Haselsberger, Alfred Batschauer, Lars-Oliver Essen. J Biol Chem 2014
32
33

Dynamics and mechanism of repair of ultraviolet-induced (6-4) photoproduct by photolyase.
Jiang Li, Zheyun Liu, Chuang Tan, Xunmin Guo, Lijuan Wang, Aziz Sancar, Dongping Zhong. Nature 2010
138
29

Structural biology of DNA photolyases and cryptochromes.
Markus Müller, Thomas Carell. Curr Opin Struct Biol 2009
88
29



Light-induced activation of class II cyclobutane pyrimidine dimer photolyases.
Asako Okafuji, Till Biskup, Kenichi Hitomi, Elizabeth D Getzoff, Gebhard Kaiser, Alfred Batschauer, Adelbert Bacher, Jun Hidema, Mika Teranishi, Kazuo Yamamoto,[...]. DNA Repair (Amst) 2010
25
32

Determining complete electron flow in the cofactor photoreduction of oxidized photolyase.
Zheyun Liu, Chuang Tan, Xunmin Guo, Jiang Li, Lijuan Wang, Aziz Sancar, Dongping Zhong. Proc Natl Acad Sci U S A 2013
72
29

Electron tunneling pathways and role of adenine in repair of cyclobutane pyrimidine dimer by DNA photolyase.
Zheyun Liu, Xunmin Guo, Chuang Tan, Jiang Li, Ya-Ting Kao, Lijuan Wang, Aziz Sancar, Dongping Zhong. J Am Chem Soc 2012
48
25

CryB from Rhodobacter sphaeroides: a unique class of cryptochromes with new cofactors.
Yann Geisselbrecht, Sebastian Frühwirth, Claudia Schroeder, Antonio J Pierik, Gabriele Klug, Lars-Oliver Essen. EMBO Rep 2012
66
25

A new class of DNA photolyases present in various organisms including aplacental mammals.
A Yasui, A P Eker, S Yasuhira, H Yajima, T Kobayashi, M Takao, A Oikawa. EMBO J 1994
158
25

Direct observation of thymine dimer repair in DNA by photolyase.
Ya-Ting Kao, Chaitanya Saxena, Lijuan Wang, Aziz Sancar, Dongping Zhong. Proc Natl Acad Sci U S A 2005
174
25

Ultrafast dynamics and anionic active states of the flavin cofactor in cryptochrome and photolyase.
Ya-Ting Kao, Chuang Tan, Sang-Hun Song, Nuri Oztürk, Jiang Li, Lijuan Wang, Aziz Sancar, Dongping Zhong. J Am Chem Soc 2008
101
25

Cryptochrome 3 from Arabidopsis thaliana: structural and functional analysis of its complex with a folate light antenna.
Tobias Klar, Richard Pokorny, Julia Moldt, Alfred Batschauer, Lars-Oliver Essen. J Mol Biol 2007
62
25


Structure of full-length Drosophila cryptochrome.
Brian D Zoltowski, Anand T Vaidya, Deniz Top, Joanne Widom, Michael W Young, Brian R Crane. Nature 2011
110
25

Crystal structure of the T(6-4)C lesion in complex with a (6-4) DNA photolyase and repair of UV-induced (6-4) and Dewar photolesions.
Andreas F Glas, Sabine Schneider, Melanie J Maul, Ulrich Hennecke, Thomas Carell. Chemistry 2009
58
22

Electron hopping through the 15 A triple tryptophan molecular wire in DNA photolyase occurs within 30 ps.
Andras Lukacs, André P M Eker, Martin Byrdin, Klaus Brettel, Marten H Vos. J Am Chem Soc 2008
86
22

Purification and characterization of a type III photolyase from Caulobacter crescentus.
Nuri Oztürk, Ya-Ting Kao, Christopher P Selby, I Halil Kavakli, Carrie L Partch, Dongping Zhong, Aziz Sancar. Biochemistry 2008
39
22

Femtosecond dynamics of flavin cofactor in DNA photolyase: radical reduction, local solvation, and charge recombination.
Haiyu Wang, Chaitanya Saxena, Donghui Quan, Aziz Sancar, Dongping Zhong. J Phys Chem B 2005
35
22

Identification of cryptochrome DASH from vertebrates.
Hiromi Daiyasu, Tomoko Ishikawa, Kei-ichi Kuma, Shigenori Iwai, Takeshi Todo, Hiroyuki Toh. Genes Cells 2004
86
22


Cryptochrome mediates light-dependent magnetosensitivity in Drosophila.
Robert J Gegear, Amy Casselman, Scott Waddell, Steven M Reppert. Nature 2008
247
22

Searching for a photocycle of the cryptochrome photoreceptors.
Bin Liu, Hongtao Liu, Dongping Zhong, Chentao Lin. Curr Opin Plant Biol 2010
112
22

SCF(FBXL3) ubiquitin ligase targets cryptochromes at their cofactor pocket.
Weiman Xing, Luca Busino, Thomas R Hinds, Samuel T Marionni, Nabiha H Saifee, Matthew F Bush, Michele Pagano, Ning Zheng. Nature 2013
149
22

Molecular evolution of the photolyase-blue-light photoreceptor family.
S Kanai, R Kikuno, H Toh, H Ryo, T Todo. J Mol Evol 1997
123
22

Structure of the photolyase-like domain of cryptochrome 1 from Arabidopsis thaliana.
Chad A Brautigam, Barbara S Smith, Zhiquan Ma, Maya Palnitkar, Diana R Tomchick, Mischa Machius, Johann Deisenhofer. Proc Natl Acad Sci U S A 2004
216
22

Dynamics and mechanisms of DNA repair by photolyase.
Zheyun Liu, Lijuan Wang, Dongping Zhong. Phys Chem Chem Phys 2015
46
22

Role of two histidines in the (6-4) photolyase reaction.
K Hitomi, H Nakamura, S T Kim, T Mizukoshi, T Ishikawa, S Iwai, T Todo. J Biol Chem 2001
96
18

Theoretical study on the repair mechanism of the (6-4) photolesion by the (6-4) photolyase.
Keyarash Sadeghian, Marco Bocola, Thomas Merz, Martin Schütz. J Am Chem Soc 2010
50
18


Crystal structure of DNA photolyase from Anacystis nidulans.
T Tamada, K Kitadokoro, Y Higuchi, K Inaka, A Yasui, P E de Ruiter, A P Eker, K Miki. Nat Struct Biol 1997
160
18

Electronic structure of (6-4) DNA photoproduct repair involving a non-oxetane pathway.
Tatiana Domratcheva, Ilme Schlichting. J Am Chem Soc 2009
38
18

Reaction mechanism of (6-4) photolyase.
X Zhao, J Liu, D S Hsu, S Zhao, J S Taylor, A Sancar. J Biol Chem 1997
119
18


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.