A citation-based method for searching scientific literature

Feng Zhang, Johannes Vierock, Ofer Yizhar, Lief E Fenno, Satoshi Tsunoda, Arash Kianianmomeni, Matthias Prigge, Andre Berndt, John Cushman, Jürgen Polle, Jon Magnuson, Peter Hegemann, Karl Deisseroth. Cell 2011
Times Cited: 298







List of co-cited articles
1045 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Millisecond-timescale, genetically targeted optical control of neural activity.
Edward S Boyden, Feng Zhang, Ernst Bamberg, Georg Nagel, Karl Deisseroth. Nat Neurosci 2005
44

Channelrhodopsin-2, a directly light-gated cation-selective membrane channel.
Georg Nagel, Tanjef Szellas, Wolfram Huhn, Suneel Kateriya, Nona Adeishvili, Peter Berthold, Doris Ollig, Peter Hegemann, Ernst Bamberg. Proc Natl Acad Sci U S A 2003
37

Channelrhodopsin-1: a light-gated proton channel in green algae.
Georg Nagel, Doris Ollig, Markus Fuhrmann, Suneel Kateriya, Anna Maria Musti, Ernst Bamberg, Peter Hegemann. Science 2002
592
28

Independent optical excitation of distinct neural populations.
Nathan C Klapoetke, Yasunobu Murata, Sung Soo Kim, Stefan R Pulver, Amanda Birdsey-Benson, Yong Ku Cho, Tania K Morimoto, Amy S Chuong, Eric J Carpenter, Zhijian Tian,[...]. Nat Methods 2014
862
26

Microbial and animal rhodopsins: structures, functions, and molecular mechanisms.
Oliver P Ernst, David T Lodowski, Marcus Elstner, Peter Hegemann, Leonid S Brown, Hideki Kandori. Chem Rev 2014
500
25


ReaChR: a red-shifted variant of channelrhodopsin enables deep transcranial optogenetic excitation.
John Y Lin, Per Magne Knutsen, Arnaud Muller, David Kleinfeld, Roger Y Tsien. Nat Neurosci 2013
406
20

The development and application of optogenetics.
Lief Fenno, Ofer Yizhar, Karl Deisseroth. Annu Rev Neurosci 2011
936
20

Optogenetics.
Karl Deisseroth. Nat Methods 2011
858
19

NEUROSCIENCE. Natural light-gated anion channels: A family of microbial rhodopsins for advanced optogenetics.
Elena G Govorunova, Oleg A Sineshchekov, Roger Janz, Xiaoqin Liu, John L Spudich. Science 2015
267
18

High-performance genetically targetable optical neural silencing by light-driven proton pumps.
Brian Y Chow, Xue Han, Allison S Dobry, Xiaofeng Qian, Amy S Chuong, Mingjie Li, Michael A Henninger, Gabriel M Belfort, Yingxi Lin, Patrick E Monahan,[...]. Nature 2010
704
17

Multimodal fast optical interrogation of neural circuitry.
Feng Zhang, Li-Ping Wang, Martin Brauner, Jana F Liewald, Kenneth Kay, Natalie Watzke, Phillip G Wood, Ernst Bamberg, Georg Nagel, Alexander Gottschalk,[...]. Nature 2007
17

Microbial Rhodopsins: Diversity, Mechanisms, and Optogenetic Applications.
Elena G Govorunova, Oleg A Sineshchekov, Hai Li, John L Spudich. Annu Rev Biochem 2017
117
16

Optogenetics in neural systems.
Ofer Yizhar, Lief E Fenno, Thomas J Davidson, Murtaza Mogri, Karl Deisseroth. Neuron 2011
959
14

Next-generation optical technologies for illuminating genetically targeted brain circuits.
Karl Deisseroth, Guoping Feng, Ania K Majewska, Gero Miesenböck, Alice Ting, Mark J Schnitzer. J Neurosci 2006
378
14

Injectable, cellular-scale optoelectronics with applications for wireless optogenetics.
Tae-il Kim, Jordan G McCall, Yei Hwan Jung, Xian Huang, Edward R Siuda, Yuhang Li, Jizhou Song, Young Min Song, Hsuan An Pao, Rak-Hwan Kim,[...]. Science 2013
468
13

Crystal structure of the channelrhodopsin light-gated cation channel.
Hideaki E Kato, Feng Zhang, Ofer Yizhar, Charu Ramakrishnan, Tomohiro Nishizawa, Kunio Hirata, Jumpei Ito, Yusuke Aita, Tomoya Tsukazaki, Shigehiko Hayashi,[...]. Nature 2012
301
13

Red-shifted optogenetic excitation: a tool for fast neural control derived from Volvox carteri.
Feng Zhang, Matthias Prigge, Florent Beyrière, Satoshi P Tsunoda, Joanna Mattis, Ofer Yizhar, Peter Hegemann, Karl Deisseroth. Nat Neurosci 2008
317
13

Noninvasive optical inhibition with a red-shifted microbial rhodopsin.
Amy S Chuong, Mitra L Miri, Volker Busskamp, Gillian A C Matthews, Leah C Acker, Andreas T Sørensen, Andrew Young, Nathan C Klapoetke, Mike A Henninger, Suhasa B Kodandaramaiah,[...]. Nat Neurosci 2014
262
12

Molecular and cellular approaches for diversifying and extending optogenetics.
Viviana Gradinaru, Feng Zhang, Charu Ramakrishnan, Joanna Mattis, Rohit Prakash, Ilka Diester, Inbal Goshen, Kimberly R Thompson, Karl Deisseroth. Cell 2010
582
12

Structure-guided transformation of channelrhodopsin into a light-activated chloride channel.
Andre Berndt, Soo Yeun Lee, Charu Ramakrishnan, Karl Deisseroth. Science 2014
215
11

Conversion of channelrhodopsin into a light-gated chloride channel.
Jonas Wietek, J Simon Wiegert, Nona Adeishvili, Franziska Schneider, Hiroshi Watanabe, Satoshi P Tsunoda, Arend Vogt, Marcus Elstner, Thomas G Oertner, Peter Hegemann. Science 2014
199
11

Structural basis for Na(+) transport mechanism by a light-driven Na(+) pump.
Hideaki E Kato, Keiichi Inoue, Rei Abe-Yoshizumi, Yoshitaka Kato, Hikaru Ono, Masae Konno, Shoko Hososhima, Toru Ishizuka, Mohammad Razuanul Hoque, Hirofumi Kunitomo,[...]. Nature 2015
112
11

Light activation of channelrhodopsin-2 in excitable cells of Caenorhabditis elegans triggers rapid behavioral responses.
Georg Nagel, Martin Brauner, Jana F Liewald, Nona Adeishvili, Ernst Bamberg, Alexander Gottschalk. Curr Biol 2005
575
11

Principles for applying optogenetic tools derived from direct comparative analysis of microbial opsins.
Joanna Mattis, Kay M Tye, Emily A Ferenczi, Charu Ramakrishnan, Daniel J O'Shea, Rohit Prakash, Lisa A Gunaydin, Minsuk Hyun, Lief E Fenno, Viviana Gradinaru,[...]. Nat Methods 2011
422
11

Temporally precise in vivo control of intracellular signalling.
Raag D Airan, Kimberly R Thompson, Lief E Fenno, Hannah Bernstein, Karl Deisseroth. Nature 2009
412
10

Ultrafast optogenetic control.
Lisa A Gunaydin, Ofer Yizhar, André Berndt, Vikaas S Sohal, Karl Deisseroth, Peter Hegemann. Nat Neurosci 2010
419
10

Structural insights into ion conduction by channelrhodopsin 2.
Oleksandr Volkov, Kirill Kovalev, Vitaly Polovinkin, Valentin Borshchevskiy, Christian Bamann, Roman Astashkin, Egor Marin, Alexander Popov, Taras Balandin, Dieter Willbold,[...]. Science 2017
68
14

In vivo light-induced activation of neural circuitry in transgenic mice expressing channelrhodopsin-2.
Benjamin R Arenkiel, Joao Peca, Ian G Davison, Catia Feliciano, Karl Deisseroth, George J Augustine, Michael D Ehlers, Guoping Feng. Neuron 2007
481
9


Neocortical excitation/inhibition balance in information processing and social dysfunction.
Ofer Yizhar, Lief E Fenno, Matthias Prigge, Franziska Schneider, Thomas J Davidson, Daniel J O'Shea, Vikaas S Sohal, Inbal Goshen, Joel Finkelstein, Jeanne T Paz,[...]. Nature 2011
9

Bi-stable neural state switches.
André Berndt, Ofer Yizhar, Lisa A Gunaydin, Peter Hegemann, Karl Deisseroth. Nat Neurosci 2009
332
9

A light-driven sodium ion pump in marine bacteria.
Keiichi Inoue, Hikaru Ono, Rei Abe-Yoshizumi, Susumu Yoshizawa, Hiroyasu Ito, Kazuhiro Kogure, Hideki Kandori. Nat Commun 2013
204
9

Structural foundations of optogenetics: Determinants of channelrhodopsin ion selectivity.
Andre Berndt, Soo Yeun Lee, Jonas Wietek, Charu Ramakrishnan, Elizabeth E Steinberg, Asim J Rashid, Hoseok Kim, Sungmo Park, Adam Santoro, Paul W Frankland,[...]. Proc Natl Acad Sci U S A 2016
106
9

Ectopic expression of a microbial-type rhodopsin restores visual responses in mice with photoreceptor degeneration.
Anding Bi, Jinjuan Cui, Yu-Ping Ma, Elena Olshevskaya, Mingliang Pu, Alexander M Dizhoor, Zhuo-Hua Pan. Neuron 2006
412
9

A toolbox of Cre-dependent optogenetic transgenic mice for light-induced activation and silencing.
Linda Madisen, Tianyi Mao, Henner Koch, Jia-min Zhuo, Antal Berenyi, Shigeyoshi Fujisawa, Yun-Wei A Hsu, Alfredo J Garcia, Xuan Gu, Sebastien Zanella,[...]. Nat Neurosci 2012
700
8

eNpHR: a Natronomonas halorhodopsin enhanced for optogenetic applications.
Viviana Gradinaru, Kimberly R Thompson, Karl Deisseroth. Brain Cell Biol 2008
286
8

Channelrhodopsin unchained: structure and mechanism of a light-gated cation channel.
Víctor A Lórenz-Fonfría, Joachim Heberle. Biochim Biophys Acta 2014
79
10

Optical deconstruction of parkinsonian neural circuitry.
Viviana Gradinaru, Murtaza Mogri, Kimberly R Thompson, Jaimie M Henderson, Karl Deisseroth. Science 2009
931
8

Bacteriorhodopsin.
Janos K Lanyi. Annu Rev Physiol 2004
351
8

Ultra light-sensitive and fast neuronal activation with the Ca²+-permeable channelrhodopsin CatCh.
Sonja Kleinlogel, Katrin Feldbauer, Robert E Dempski, Heike Fotis, Phillip G Wood, Christian Bamann, Ernst Bamberg. Nat Neurosci 2011
243
8

A high-light sensitivity optical neural silencer: development and application to optogenetic control of non-human primate cortex.
Xue Han, Brian Y Chow, Huihui Zhou, Nathan C Klapoetke, Amy Chuong, Reza Rajimehr, Aimei Yang, Michael V Baratta, Jonathan Winkle, Robert Desimone,[...]. Front Syst Neurosci 2011
286
7

Genetic reactivation of cone photoreceptors restores visual responses in retinitis pigmentosa.
Volker Busskamp, Jens Duebel, David Balya, Mathias Fradot, Tim James Viney, Sandra Siegert, Anna C Groner, Erik Cabuy, Valérie Forster, Mathias Seeliger,[...]. Science 2010
379
7

Selective photostimulation of genetically chARGed neurons.
Boris V Zemelman, Georgia A Lee, Minna Ng, Gero Miesenböck. Neuron 2002
266
7

Optical recording of action potentials in mammalian neurons using a microbial rhodopsin.
Joel M Kralj, Adam D Douglass, Daniel R Hochbaum, Dougal Maclaurin, Adam E Cohen. Nat Methods 2011
268
7

Photoactivation of channelrhodopsin.
Oliver P Ernst, Pedro A Sánchez Murcia, Peter Daldrop, Satoshi P Tsunoda, Suneel Kateriya, Peter Hegemann. J Biol Chem 2008
107
7

Structure of bacteriorhodopsin at 1.55 A resolution.
H Luecke, B Schobert, H T Richter, J P Cartailler, J K Lanyi. J Mol Biol 1999
7

Monitoring light-induced structural changes of Channelrhodopsin-2 by UV-visible and Fourier transform infrared spectroscopy.
Eglof Ritter, Katja Stehfest, Andre Berndt, Peter Hegemann, Franz J Bartl. J Biol Chem 2008
121
7

All-optical electrophysiology in mammalian neurons using engineered microbial rhodopsins.
Daniel R Hochbaum, Yongxin Zhao, Samouil L Farhi, Nathan Klapoetke, Christopher A Werley, Vikrant Kapoor, Peng Zou, Joel M Kralj, Dougal Maclaurin, Niklas Smedemark-Margulies,[...]. Nat Methods 2014
375
7

Characterization of engineered channelrhodopsin variants with improved properties and kinetics.
John Y Lin, Michael Z Lin, Paul Steinbach, Roger Y Tsien. Biophys J 2009
402
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.