A citation-based method for searching scientific literature

Mark J Morris, Katherine L Wingate, Jagannath Silwal, Thomas C Leeper, Soumitra Basu. Nucleic Acids Res 2012
Times Cited: 95







List of co-cited articles
1055 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription.
Adam Siddiqui-Jain, Cory L Grand, David J Bearss, Laurence H Hurley. Proc Natl Acad Sci U S A 2002
32

An RNA G-quadruplex in the 5' UTR of the NRAS proto-oncogene modulates translation.
Sunita Kumari, Anthony Bugaut, Julian L Huppert, Shankar Balasubramanian. Nat Chem Biol 2007
539
30

5'-UTR RNA G-quadruplexes: translation regulation and targeting.
Anthony Bugaut, Shankar Balasubramanian. Nucleic Acids Res 2012
424
28

Quantitative visualization of DNA G-quadruplex structures in human cells.
Giulia Biffi, David Tannahill, John McCafferty, Shankar Balasubramanian. Nat Chem 2013
28


G-quadruplexes: the beginning and end of UTRs.
Julian Leon Huppert, Anthony Bugaut, Sunita Kumari, Shankar Balasubramanian. Nucleic Acids Res 2008
296
22

G-quadruplexes in RNA biology.
Stefania Millevoi, Hervé Moine, Stéphan Vagner. Wiley Interdiscip Rev RNA 2012
195
22

Prevalence of quadruplexes in the human genome.
Julian L Huppert, Shankar Balasubramanian. Nucleic Acids Res 2005
22

G-quadruplexes in promoters throughout the human genome.
Julian L Huppert, Shankar Balasubramanian. Nucleic Acids Res 2007
879
21

Visualization and selective chemical targeting of RNA G-quadruplex structures in the cytoplasm of human cells.
Giulia Biffi, Marco Di Antonio, David Tannahill, Shankar Balasubramanian. Nat Chem 2014
377
21

An RNA G-quadruplex is essential for cap-independent translation initiation in human VEGF IRES.
Mark J Morris, Yoichi Negishi, Cathy Pazsint, Joseph D Schonhoft, Soumitra Basu. J Am Chem Soc 2010
146
18

Quadruplex DNA: sequence, topology and structure.
Sarah Burge, Gary N Parkinson, Pascale Hazel, Alan K Todd, Stephen Neidle. Nucleic Acids Res 2006
18

Helix formation by guanylic acid.
M GELLERT, M N LIPSETT, D R DAVIES. Proc Natl Acad Sci U S A 1962
16


Targeting G-quadruplexes in gene promoters: a novel anticancer strategy?
Shankar Balasubramanian, Laurence H Hurley, Stephen Neidle. Nat Rev Drug Discov 2011
16

DNA secondary structures: stability and function of G-quadruplex structures.
Matthew L Bochman, Katrin Paeschke, Virginia A Zakian. Nat Rev Genet 2012
836
16

A G-quadruplex structure within the 5'-UTR of TRF2 mRNA represses translation in human cells.
Dennis Gomez, Aurore Guédin, Jean-Louis Mergny, Bernard Salles, Jean-François Riou, Marie-Paule Teulade-Fichou, Patrick Calsou. Nucleic Acids Res 2010
134
15

The cationic porphyrin TMPyP4 destabilizes the tetraplex form of the fragile X syndrome expanded sequence d(CGG)n.
Pnina Weisman-Shomer, Esther Cohen, Inbal Hershco, Samer Khateb, Orit Wolfovitz-Barchad, Laurence H Hurley, Michael Fry. Nucleic Acids Res 2003
50
28


Crystal structure of parallel quadruplexes from human telomeric DNA.
Gary N Parkinson, Michael P H Lee, Stephen Neidle. Nature 2002
13

A novel small molecule that alters shelterin integrity and triggers a DNA-damage response at telomeres.
Raphaël Rodriguez, Sebastian Müller, Justin A Yeoman, Chantal Trentesaux, Jean-François Riou, Shankar Balasubramanian. J Am Chem Soc 2008
279
13

Highly prevalent putative quadruplex sequence motifs in human DNA.
Alan K Todd, Matthew Johnston, Stephen Neidle. Nucleic Acids Res 2005
705
13

The cationic porphyrin TMPyP4 down-regulates c-MYC and human telomerase reverse transcriptase expression and inhibits tumor growth in vivo.
Cory L Grand, Haiyong Han, Rubén M Muñoz, Steve Weitman, Daniel D Von Hoff, Laurence H Hurley, David J Bearss. Mol Cancer Ther 2002
280
13

Effects of cationic porphyrins as G-quadruplex interactive agents in human tumor cells.
E Izbicka, R T Wheelhouse, E Raymond, K K Davidson, R A Lawrence, D Sun, B E Windle, L H Hurley, D D Von Hoff. Cancer Res 1999
297
13

Selective interactions of cationic porphyrins with G-quadruplex structures.
H Han, D R Langley, A Rangan, L H Hurley. J Am Chem Soc 2001
253
13

A crystallographic and modelling study of a human telomeric RNA (TERRA) quadruplex.
Gavin W Collie, Shozeb M Haider, Stephen Neidle, Gary N Parkinson. Nucleic Acids Res 2010
162
12

Inhibition of translation in living eukaryotic cells by an RNA G-quadruplex motif.
Amit Arora, Mariola Dutkiewicz, Vinod Scaria, Manoj Hariharan, Souvik Maiti, Jens Kurreck. RNA 2008
168
12


Small molecule-mediated inhibition of translation by targeting a native RNA G-quadruplex.
Anthony Bugaut, Raphaël Rodriguez, Sunita Kumari, Shang-Te Danny Hsu, Shankar Balasubramanian. Org Biomol Chem 2010
81
14

Shedding light on the interaction between TMPyP4 and human telomeric quadruplexes.
Luigi Martino, Bruno Pagano, Iolanda Fotticchia, Stephen Neidle, Concetta Giancola. J Phys Chem B 2009
107
12

QGRS Mapper: a web-based server for predicting G-quadruplexes in nucleotide sequences.
Oleg Kikin, Lawrence D'Antonio, Paramjeet S Bagga. Nucleic Acids Res 2006
536
12

Structural basis for binding of porphyrin to human telomeres.
Gary N Parkinson, Ragini Ghosh, Stephen Neidle. Biochemistry 2007
232
12

High-throughput sequencing of DNA G-quadruplex structures in the human genome.
Vicki S Chambers, Giovanni Marsico, Jonathan M Boutell, Marco Di Antonio, Geoffrey P Smith, Shankar Balasubramanian. Nat Biotechnol 2015
633
12

G-quadruplex structures: in vivo evidence and function.
Hans J Lipps, Daniela Rhodes. Trends Cell Biol 2009
573
11

Efficient suppression of gene expression by targeting 5'-UTR-based RNA quadruplexes with bisquinolinium compounds.
Kangkan Halder, Eric Largy, Martin Benzler, Marie-Paule Teulade-Fichou, Jörg S Hartig. Chembiochem 2011
35
31

A small molecule that disrupts G-quadruplex DNA structure and enhances gene expression.
Zoë A E Waller, Sven A Sewitz, Shang-Te Danny Hsu, Shankar Balasubramanian. J Am Chem Soc 2009
90
12

The G4 genome.
Nancy Maizels, Lucas T Gray. PLoS Genet 2013
347
11


G-quadruplexes and their regulatory roles in biology.
Daniela Rhodes, Hans J Lipps. Nucleic Acids Res 2015
819
11

rG4-seq reveals widespread formation of G-quadruplex structures in the human transcriptome.
Chun Kit Kwok, Giovanni Marsico, Aleksandr B Sahakyan, Vicki S Chambers, Shankar Balasubramanian. Nat Methods 2016
209
11

G-quadruplexes and G-quadruplex ligands: targets and tools in antiviral therapy.
Emanuela Ruggiero, Sara N Richter. Nucleic Acids Res 2018
208
11


G-quadruplex structures in TP53 intron 3: role in alternative splicing and in production of p53 mRNA isoforms.
Virginie Marcel, Phong L T Tran, Charlotte Sagne, Ghyslaine Martel-Planche, Laurence Vaslin, Marie-Paule Teulade-Fichou, Janet Hall, Jean-Louis Mergny, Pierre Hainaut, Eric Van Dyck. Carcinogenesis 2011
153
10

Antitumor activity of G-quadruplex-interactive agent TMPyP4 in K562 leukemic cells.
Yoko Mikami-Terao, Masaharu Akiyama, Yuki Yuza, Takaaki Yanagisawa, Osamu Yamada, Hisashi Yamada. Cancer Lett 2008
83
12

5'-UTR G-quadruplex structures acting as translational repressors.
Jean-Denis Beaudoin, Jean-Pierre Perreault. Nucleic Acids Res 2010
156
10

The G-quadruplex augments translation in the 5' untranslated region of transforming growth factor β2.
Prachi Agarwala, Satyaprakash Pandey, Koyeli Mapa, Souvik Maiti. Biochemistry 2013
56
17

Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter.
Anh Tuân Phan, Vitaly Kuryavyi, Hai Yan Gaw, Dinshaw J Patel. Nat Chem Biol 2005
371
10

G-quadruplexes regulate Epstein-Barr virus-encoded nuclear antigen 1 mRNA translation.
Pierre Murat, Jie Zhong, Lea Lekieffre, Nathan P Cowieson, Jennifer L Clancy, Thomas Preiss, Shankar Balasubramanian, Rajiv Khanna, Judy Tellam. Nat Chem Biol 2014
167
10

The G-quadruplex-interactive molecule BRACO-19 inhibits tumor growth, consistent with telomere targeting and interference with telomerase function.
Angelika M Burger, Fangping Dai, Christoph M Schultes, Anthony P Reszka, Michael J Moore, John A Double, Stephen Neidle. Cancer Res 2005
396
10


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.