A citation-based method for searching scientific literature

Motoshi Hayano, Yutaka Kanoh, Seiji Matsumoto, Claire Renard-Guillet, Katsuhiko Shirahige, Hisao Masai. Genes Dev 2012
Times Cited: 148







List of co-cited articles
1258 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Rif1 regulates the replication timing domains on the human genome.
Satoshi Yamazaki, Aii Ishii, Yutaka Kanoh, Masako Oda, Yasumasa Nishito, Hisao Masai. EMBO J 2012
145
64

Protein phosphatase 1 recruitment by Rif1 regulates DNA replication origin firing by counteracting DDK activity.
Anoushka Davé, Carol Cooley, Mansi Garg, Alessandro Bianchi. Cell Rep 2014
95
63

Rif1 controls DNA replication by directing Protein Phosphatase 1 to reverse Cdc7-mediated phosphorylation of the MCM complex.
Shin-Ichiro Hiraga, Gina M Alvino, Fujung Chang, Hui-Yong Lian, Akila Sridhar, Takashi Kubota, Bonita J Brewer, Michael Weinreich, M K Raghuraman, Anne D Donaldson. Genes Dev 2014
126
60

Mouse Rif1 is a key regulator of the replication-timing programme in mammalian cells.
Daniela Cornacchia, Vishnu Dileep, Jean-Pierre Quivy, Rossana Foti, Federico Tili, Rachel Santarella-Mellwig, Claude Antony, Geneviève Almouzni, David M Gilbert, Sara B C Buonomo. EMBO J 2012
144
60

Rif1 controls DNA replication timing in yeast through the PP1 phosphatase Glc7.
Stefano Mattarocci, Maksym Shyian, Laure Lemmens, Pascal Damay, Dogus Murat Altintas, Tianlai Shi, Clinton R Bartholomew, Nicolas H Thomä, Christopher F J Hardy, David Shore. Cell Rep 2014
93
59

Rif1 binds to G quadruplexes and suppresses replication over long distances.
Yutaka Kanoh, Seiji Matsumoto, Rino Fukatsu, Naoko Kakusho, Nobuaki Kono, Claire Renard-Guillet, Koji Masuda, Keisuke Iida, Kazuo Nagasawa, Katsuhiko Shirahige,[...]. Nat Struct Mol Biol 2015
87
45


Nuclear Architecture Organized by Rif1 Underpins the Replication-Timing Program.
Rossana Foti, Stefano Gnan, Daniela Cornacchia, Vishnu Dileep, Aydan Bulut-Karslioglu, Sarah Diehl, Andreas Buness, Felix A Klein, Wolfgang Huber, Ewan Johnstone,[...]. Mol Cell 2016
86
44

Rif1 regulates initiation timing of late replication origins throughout the S. cerevisiae genome.
Jared M Peace, Anna Ter-Zakarian, Oscar M Aparicio. PLoS One 2014
49
65

Human Rif1, ortholog of a yeast telomeric protein, is regulated by ATM and 53BP1 and functions in the S-phase checkpoint.
Joshua Silverman, Hiroyuki Takai, Sara B C Buonomo, Frank Eisenhaber, Titia de Lange. Genes Dev 2004
142
30

53BP1 regulates DSB repair using Rif1 to control 5' end resection.
Michal Zimmermann, Francisca Lottersberger, Sara B Buonomo, Agnel Sfeir, Titia de Lange. Science 2013
375
29

Telomere-binding protein Taz1 controls global replication timing through its localization near late replication origins in fission yeast.
Atsutoshi Tazumi, Masayoshi Fukuura, Ryuichiro Nakato, Ami Kishimoto, Tomokazu Takenaka, Shiho Ogawa, Ji-Hoon Song, Tatsuro S Takahashi, Takuro Nakagawa, Katsuhiko Shirahige,[...]. Genes Dev 2012
57
47

Functional diversification of yeast telomere associated protein, Rif1, in higher eukaryotes.
Easwaran Sreesankar, Ramamoorthy Senthilkumar, Vellaichamy Bharathi, Rakesh K Mishra, Krishnaveni Mishra. BMC Genomics 2012
42
64

RIF1 is essential for 53BP1-dependent nonhomologous end joining and suppression of DNA double-strand break resection.
J Ross Chapman, Patricia Barral, Jean-Baptiste Vannier, Valérie Borel, Martin Steger, Antonia Tomas-Loba, Alessandro A Sartori, Ian R Adams, Facundo D Batista, Simon J Boulton. Mol Cell 2013
374
26

Limiting replication initiation factors execute the temporal programme of origin firing in budding yeast.
Davide Mantiero, Amanda Mackenzie, Anne Donaldson, Philip Zegerman. EMBO J 2011
166
26

Rif1 prevents resection of DNA breaks and promotes immunoglobulin class switching.
Michela Di Virgilio, Elsa Callen, Arito Yamane, Wenzhu Zhang, Mila Jankovic, Alexander D Gitlin, Niklas Feldhahn, Wolfgang Resch, Thiago Y Oliveira, Brian T Chait,[...]. Science 2013
266
25

A cell cycle-dependent regulatory circuit composed of 53BP1-RIF1 and BRCA1-CtIP controls DNA repair pathway choice.
Cristina Escribano-Díaz, Alexandre Orthwein, Amélie Fradet-Turcotte, Mengtan Xing, Jordan T F Young, Ján Tkáč, Michael A Cook, Adam P Rosebrock, Meagan Munro, Marella D Canny,[...]. Mol Cell 2013
518
24


Human RIF1 and protein phosphatase 1 stimulate DNA replication origin licensing but suppress origin activation.
Shin-Ichiro Hiraga, Tony Ly, Javier Garzón, Zuzana Hořejší, Yoshi-Nobu Ohkubo, Akinori Endo, Chikashi Obuse, Simon J Boulton, Angus I Lamond, Anne D Donaldson. EMBO Rep 2017
59
40

Rif1 provides a new DNA-binding interface for the Bloom syndrome complex to maintain normal replication.
Dongyi Xu, Parameswary Muniandy, Elisabetta Leo, Jinhu Yin, Saravanabhavan Thangavel, Xi Shen, Miki Ii, Keli Agama, Rong Guo, David Fox,[...]. EMBO J 2010
65
35

Mammalian Rif1 contributes to replication stress survival and homology-directed repair.
Sara B C Buonomo, Yipin Wu, David Ferguson, Titia de Lange. J Cell Biol 2009
85
25

Forkhead transcription factors establish origin timing and long-range clustering in S. cerevisiae.
Simon R V Knott, Jared M Peace, A Zachary Ostrow, Yan Gan, Alexandra E Rex, Christopher J Viggiani, Simon Tavaré, Oscar M Aparicio. Cell 2012
124
22

Rif1 and Rif2 shape telomere function and architecture through multivalent Rap1 interactions.
Tianlai Shi, Richard D Bunker, Stefano Mattarocci, Cyril Ribeyre, Mahamadou Faty, Heinz Gut, Andrea Scrima, Ulrich Rass, Seth M Rubin, David Shore,[...]. Cell 2013
69
31


DNA replication timing.
Nicholas Rhind, David M Gilbert. Cold Spring Harb Perspect Biol 2013
172
21


Topologically associating domains are stable units of replication-timing regulation.
Benjamin D Pope, Tyrone Ryba, Vishnu Dileep, Feng Yue, Weisheng Wu, Olgert Denas, Daniel L Vera, Yanli Wang, R Scott Hansen, Theresa K Canfield,[...]. Nature 2014
430
20

Origin association of Sld3, Sld7, and Cdc45 proteins is a key step for determination of origin-firing timing.
Seiji Tanaka, Ryuichiro Nakato, Yuki Katou, Katsuhiko Shirahige, Hiroyuki Araki. Curr Biol 2011
154
19

Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types.
Tyrone Ryba, Ichiro Hiratani, Junjie Lu, Mari Itoh, Michael Kulik, Jinfeng Zhang, Thomas C Schulz, Allan J Robins, Stephen Dalton, David M Gilbert. Genome Res 2010
351
19

The effect of Ku on telomere replication time is mediated by telomere length but is independent of histone tail acetylation.
Hui-Yong Lian, E Douglas Robertson, Shin-ichiro Hiraga, Gina M Alvino, David Collingwood, Heather J McCune, Akila Sridhar, Bonita J Brewer, M K Raghuraman, Anne D Donaldson. Mol Biol Cell 2011
48
39


RIF1 counteracts BRCA1-mediated end resection during DNA repair.
Lin Feng, Ka-Wing Fong, Jiadong Wang, Wenqi Wang, Junjie Chen. J Biol Chem 2013
176
17


Rif1: A Conserved Regulator of DNA Replication and Repair Hijacked by Telomeres in Yeasts.
Stefano Mattarocci, Lukas Hafner, Aleksandra Lezaja, Maksym Shyian, David Shore. Front Genet 2016
21
76


Saccharomyces cerevisiae Rif1 cooperates with MRX-Sae2 in promoting DNA-end resection.
Marina Martina, Diego Bonetti, Matteo Villa, Giovanna Lucchini, Maria Pia Longhese. EMBO Rep 2014
17
88

Drosophila Rif1 is an essential gene and controls late developmental events by direct interaction with PP1-87B.
Easwaran Sreesankar, Vellaichamy Bharathi, Rakesh K Mishra, Krishnaveni Mishra. Sci Rep 2015
20
75

Mouse Rif1 is a regulatory subunit of protein phosphatase 1 (PP1).
Rasa Sukackaite, Daniela Cornacchia, Malene Ringkjøbing Jensen, Philippe J Mas, Martin Blackledge, Elin Enervald, Guangyou Duan, Tania Auchynnikava, Maja Köhn, Darren J Hart,[...]. Sci Rep 2017
22
68

Rif1 maintains telomeres and mediates DNA repair by encasing DNA ends.
Stefano Mattarocci, Julia K Reinert, Richard D Bunker, Gabriele A Fontana, Tianlai Shi, Dominique Klein, Simone Cavadini, Mahamadou Faty, Maksym Shyian, Lukas Hafner,[...]. Nat Struct Mol Biol 2017
24
62

The heterochromatin protein Swi6/HP1 activates replication origins at the pericentromeric region and silent mating-type locus.
Makoto T Hayashi, Tatsuro S Takahashi, Takuro Nakagawa, Jun-ichi Nakayama, Hisao Masukata. Nat Cell Biol 2009
114
14

Global reorganization of replication domains during embryonic stem cell differentiation.
Ichiro Hiratani, Tyrone Ryba, Mari Itoh, Tomoki Yokochi, Michaela Schwaiger, Chia-Wei Chang, Yung Lyou, Tim M Townes, Dirk Schübeler, David M Gilbert. PLoS Biol 2008
367
14

Genome-scale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved features.
Christelle Cayrou, Philippe Coulombe, Alice Vigneron, Slavica Stanojcic, Olivier Ganier, Isabelle Peiffer, Eric Rivals, Aurore Puy, Sabine Laurent-Chabalier, Romain Desprat,[...]. Genome Res 2011
208
14

Rif1 maintains telomere length homeostasis of ESCs by mediating heterochromatin silencing.
Jiameng Dan, Yifei Liu, Na Liu, Maria Chiourea, Maja Okuka, Tao Wu, Xiaoying Ye, Chunlin Mou, Lei Wang, Lingling Wang,[...]. Dev Cell 2014
61
21

Genome-wide dynamics of replication timing revealed by in vitro models of mouse embryogenesis.
Ichiro Hiratani, Tyrone Ryba, Mari Itoh, Joy Rathjen, Michael Kulik, Bernadett Papp, Eden Fussner, David P Bazett-Jones, Kathrin Plath, Stephen Dalton,[...]. Genome Res 2010
214
13

Comparative analysis of DNA replication timing reveals conserved large-scale chromosomal architecture.
Eitan Yaffe, Shlomit Farkash-Amar, Andreas Polten, Zohar Yakhini, Amos Tanay, Itamar Simon. PLoS Genet 2010
113
13

Unraveling cell type-specific and reprogrammable human replication origin signatures associated with G-quadruplex consensus motifs.
Emilie Besnard, Amélie Babled, Laure Lapasset, Ollivier Milhavet, Hugues Parrinello, Christelle Dantec, Jean-Michel Marin, Jean-Marc Lemaitre. Nat Struct Mol Biol 2012
238
13

Regulated eukaryotic DNA replication origin firing with purified proteins.
Joseph T P Yeeles, Tom D Deegan, Agnieszka Janska, Anne Early, John F X Diffley. Nature 2015
271
13

Eukaryotic chromosome DNA replication: where, when, and how?
Hisao Masai, Seiji Matsumoto, Zhiying You, Naoko Yoshizawa-Sugata, Masako Oda. Annu Rev Biochem 2010
325
13


Anticheckpoint pathways at telomeres in yeast.
Cyril Ribeyre, David Shore. Nat Struct Mol Biol 2012
67
19


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.